Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_3g12930 Fragaria vesca HOM05D005271 ORTHO05D006072 4.0e-51 204.5 106 100.0
FAN11G1405 Fragaria x ananassa HOM05D005271 ORTHO05D006072 4.0e-51 204.5 106 100.0
FAN16G1303 Fragaria x ananassa HOM05D005271 ORTHO05D006072 2.2e-49 198.7 106 98.1
FvH4_4g01060 Fragaria vesca HOM05D005271 ORTHO05D006072 3.1e-48 194.9 106 96.2
FAN12G2425 Fragaria x ananassa HOM05D005271 ORTHO05D006072 3.1e-48 194.9 106 96.2
FAN21G0135 Fragaria x ananassa HOM05D005271 ORTHO05D006072 3.1e-48 194.9 106 98.1
RcHm_v2.0_Chr5g0021041 Rosa chinensis HOM05D005271 ORTHO05D006072 2.7e-47 191.8 106 94.3
FAN22G0530 Fragaria x ananassa HOM05D005271 ORTHO05D006072 8.5e-46 186.8 106 92.5
Prupe.4G117300 Prunus persica HOM05D005271 ORTHO05D006072 2.2e-41 172.2 106 83.0
CiPaw.09G137400 Carya illinoinensis HOM05D005271 ORTHO05D006072 2.9e-38 161.8 106 74.5
Cfa001130 Carpinus fangiana HOM05D005271 ORTHO05D006072 1.9e-37 159.1 106 74.5
Duzib151G0973 Durio zibethinus HOM05D005271 ORTHO05D006072 4.3e-37 157.9 105 76.2
CANSAT25G1004 Cannabis sativa HOM05D005271 ORTHO05D006072 1.6e-36 156.0 114 72.8
Atru.chr1.851 Acer truncatum HOM05D005271 ORTHO05D006072 6.1e-36 154.1 106 74.5
Cpa.g.sc51.137 Carica papaya HOM05D005271 ORTHO05D006072 6.1e-36 154.1 106 75.5
ClCG01G025510 Citrullus lanatus HOM05D005271 ORTHO05D006072 8.0e-36 153.7 105 74.3
Gohir.D09G227900 Gossypium hirsutum HOM05D005271 ORTHO05D006072 8.0e-36 153.7 105 73.3
Gorai.006G250600 Gossypium raimondii HOM05D005271 ORTHO05D006072 8.0e-36 153.7 105 73.3
Ca_28197_v3 Cicer arietinum L. HOM05D005271 ORTHO05D006072 1.4e-35 152.9 103 74.8
Duzib212G0597 Durio zibethinus HOM05D005271 ORTHO05D006072 1.4e-35 152.9 105 71.4
Gohir.A09G226900 Gossypium hirsutum HOM05D005271 ORTHO05D006072 1.4e-35 152.9 105 72.4
Potri.001G160500 Populus trichocarpa HOM05D005271 ORTHO05D006072 1.4e-35 152.9 106 72.6
arahy.Tifrunner.gnm1.ann1.0KQV7A Arachis hypogaea HOM05D005271 ORTHO05D006072 2.3e-35 152.1 103 71.8
arahy.Tifrunner.gnm1.ann1.31Z3CL Arachis hypogaea HOM05D005271 ORTHO05D006072 2.3e-35 152.1 103 71.8
PGR142G2670 Punica granatum HOM05D005271 ORTHO05D006072 3.0e-35 151.8 106 70.8
Sed0007631 Sechium edule HOM05D005271 ORTHO05D006072 3.0e-35 151.8 105 72.4
Thecc.04G266100 Theobroma cacao HOM05D005271 ORTHO05D006072 5.2e-35 151.0 105 71.4
arahy.Tifrunner.gnm1.ann1.5IT82G Arachis hypogaea HOM05D005271 ORTHO05D006072 6.8e-35 150.6 103 71.8
Ciclev10017270m.g Citrus clementina HOM05D005271 ORTHO05D006072 1.2e-34 149.8 106 70.8
MELO3C007032.2 Cucumis melo HOM05D005271 ORTHO05D006072 1.2e-34 149.8 107 73.8
Manes.05G190800 Manihot esculenta HOM05D005271 ORTHO05D006072 1.2e-34 149.8 106 72.6
Phvul.004G017800 Phaseolus vulgaris HOM05D005271 ORTHO05D006072 1.5e-34 149.4 103 70.9
Psat0s5346g0120 Pisum sativum HOM05D005271 ORTHO05D006072 1.5e-34 149.4 103 71.8
CsaV3_6G052780 Cucumis sativus L. HOM05D005271 ORTHO05D006072 2.0e-34 149.1 105 71.4
QL11p012305 Quercus lobata HOM05D005271 ORTHO05D006072 2.0e-34 149.1 116 66.4
arahy.Tifrunner.gnm1.ann1.VX2J7C Arachis hypogaea HOM05D005271 ORTHO05D006072 4.4e-34 147.9 103 69.9
Lj2g0008924 Lotus japonicus HOM05D005271 ORTHO05D006072 4.4e-34 147.9 103 69.9
Medtr6g017185 Medicago truncatula HOM05D005271 ORTHO05D006072 7.5e-34 147.1 103 69.9
Dinv31186 Davidia involucrata HOM05D005271 ORTHO05D006072 1.7e-33 146.0 107 71.0
TWI15G1056 Tripterygium wilfordii HOM05D005271 ORTHO05D006072 1.7e-33 146.0 106 70.8
CSS0040197 Camellia sinensis var. sinensis HOM05D005271 ORTHO05D006072 3.7e-33 144.8 107 70.1
Glyma.19G010500 Glycine max HOM05D005271 ORTHO05D006072 4.9e-33 144.4 105 70.5
HanXRQChr14g0428301 Helianthus annuus HOM05D005271 ORTHO05D006072 6.4e-33 144.1 107 68.2
MD10G1227700 Malus domestica HOM05D005271 ORTHO05D006072 6.4e-33 144.1 94 75.5
Manes.01G042100 Manihot esculenta HOM05D005271 ORTHO05D006072 6.4e-33 144.1 106 68.9
Sabra01G0131700 Salix brachista HOM05D005271 ORTHO05D006072 6.4e-33 144.1 119 65.5
TWI63G0865 Tripterygium wilfordii HOM05D005271 ORTHO05D006072 6.4e-33 144.1 106 70.8
VMungo0464G2009 Vigna mungo HOM05D005271 ORTHO05D006072 6.4e-33 144.1 103 68.0
vmacro03554 Vaccinium macrocarpon HOM05D005271 ORTHO05D006072 8.3e-33 143.7 106 68.9
PSO541G1812 Papaver somniferum HOM05D005271 ORTHO05D006072 1.1e-32 143.3 108 68.5
Rhsim04G0167900 Rhododendron simsii HOM05D005271 ORTHO05D006072 1.4e-32 142.9 106 68.9
Cc10_g11580 Coffea canephora HOM05D005271 ORTHO05D006072 1.8e-32 142.5 107 70.1
Glyma.13G170400 Glycine max HOM05D005271 ORTHO05D006072 1.8e-32 142.5 105 68.6
PSO782G3340 Papaver somniferum HOM05D005271 ORTHO05D006072 1.8e-32 142.5 109 67.9
arahy.Tifrunner.gnm1.ann1.FU3306 Arachis hypogaea HOM05D005271 ORTHO05D006072 2.4e-32 142.1 103 68.9
PSO675G0749 Papaver somniferum HOM05D005271 ORTHO05D006072 3.2e-32 141.7 105 66.7
MD05G1247100 Malus domestica HOM05D005271 ORTHO05D006072 5.4e-32 141.0 92 77.2
THA.LOC104800917 Tarenaya hassleriana HOM05D005271 ORTHO05D006072 7.0e-32 140.6 106 67.9
Aa31LG5G5280 Aethionema arabicum HOM05D005271 ORTHO05D006072 9.2e-32 140.2 106 65.1
CARHR125350 Cardamine hirsuta HOM05D005271 ORTHO05D006072 9.2e-32 140.2 106 66.0
Oeu017888.1 Olea europaea HOM05D005271 ORTHO05D006072 9.2e-32 140.2 106 65.1
AT1G05780 Arabidopsis thaliana HOM05D005271 ORTHO05D006072 1.2e-31 139.8 105 68.6
Nitab4.5_0004741g0030 Nicotiana tabacum HOM05D005271 ORTHO05D006072 1.2e-31 139.8 106 65.1
Thhalv10017819m.g Eutrema salsugineum HOM05D005271 ORTHO05D006072 2.0e-31 139.0 106 65.1
THA.LOC104815870 Tarenaya hassleriana HOM05D005271 ORTHO05D006072 2.0e-31 139.0 106 66.0
Actinidia22429 Actinidia chinensis HOM05D005271 ORTHO05D006072 2.7e-31 138.7 107 68.2
Lalb_Chr02g0160001 Lupinus albus HOM05D005271 ORTHO05D006072 2.7e-31 138.7 103 67.0
Lalb_Chr02g0160211 Lupinus albus HOM05D005271 ORTHO05D006072 2.7e-31 138.7 103 67.0
Nitab4.5_0002741g0010 Nicotiana tabacum HOM05D005271 ORTHO05D006072 2.7e-31 138.7 107 65.4
AL1G15680 Arabidopsis lyrata HOM05D005271 ORTHO05D006072 3.5e-31 138.3 105 67.6
AL4G26950 Arabidopsis lyrata HOM05D005271 ORTHO05D006072 5.9e-31 137.5 106 64.2
AT2G31710 Arabidopsis thaliana HOM05D005271 ORTHO05D006072 5.9e-31 137.5 106 63.2
BcaB06g28531 Brassica carinata HOM05D005271 ORTHO05D006072 1.0e-30 136.7 106 63.2
C04p60870 Brassica napus HOM05D005271 ORTHO05D006072 1.0e-30 136.7 106 63.2
BolC4t27578H Brassica oleracea HOM05D005271 ORTHO05D006072 1.0e-30 136.7 106 63.2
BcaC01g05934 Brassica carinata HOM05D000364 ORTHO05D006072 1.3e-30 136.3 106 63.2
C03p20920 Brassica napus HOM05D000364 ORTHO05D006072 1.3e-30 136.3 106 63.2
CAN.G350.33 Capsicum annuum HOM05D005271 ORTHO05D006072 1.3e-30 136.3 107 63.6
Carub.0004s1300 Capsella rubella HOM05D005271 ORTHO05D006072 1.7e-30 136.0 106 62.3
DCAR_002456 Daucus carota HOM05D005271 ORTHO05D006072 1.7e-30 136.0 107 67.3
DCAR_002458 Daucus carota HOM05D005271 ORTHO05D006072 1.7e-30 136.0 107 67.3
Hma1.2p1_0088F.1_g045170 Hydrangea macrophylla HOM05D005271 ORTHO05D006072 1.7e-30 136.0 107 65.4
A04p24140 Brassica napus HOM05D005271 ORTHO05D006072 3.0e-30 135.2 106 62.3
CARHR005290 Cardamine hirsuta HOM05D005271 ORTHO05D006072 3.0e-30 135.2 105 62.9
PSO170G3626 Papaver somniferum HOM05D005271 ORTHO05D006072 3.0e-30 135.2 84 76.2
BraA04t17934Z Brassica rapa HOM05D005271 ORTHO05D006072 3.9e-30 134.8 106 63.2
Migut.N03355 Erythranthe guttata HOM05D005271 ORTHO05D006072 5.0e-30 134.4 105 65.7
Ah.05g173390 Amaranthus hybridus HOM05D005271 ORTHO05D006072 8.6e-30 133.7 96 65.6
Aqoxy1G00251 Aquilegia oxysepala HOM05D005271 ORTHO05D006072 8.6e-30 133.7 107 67.3
BraA03t11049Z Brassica rapa HOM05D000364 ORTHO05D006072 8.6e-30 133.7 106 61.3
ECA238G4336 Erigeron canadensis HOM05D005271 ORTHO05D006072 8.6e-30 133.7 105 59.0
SGA_v2.0_scaffold149G36579 Striga asiatica HOM05D005271 ORTHO05D006072 8.6e-30 133.7 105 65.7
Migut.C01265 Erythranthe guttata HOM05D005271 ORTHO05D006072 1.9e-29 132.5 106 66.0
A03p17850 Brassica napus HOM05D000364 ORTHO05D006072 2.5e-29 132.1 106 60.4
Lsat_1_v5_gn_2_4960 Lactuca sativa HOM05D005271 ORTHO05D006072 2.5e-29 132.1 114 59.6
TAR629G0996 Trochodendron aralioides HOM05D005271 ORTHO05D006072 2.5e-29 132.1 107 63.6
Nn7g38328 Nelumbo nucifera HOM05D005271 ORTHO05D006072 4.3e-29 131.3 107 64.5
Gohir.A10G107101 Gossypium hirsutum HOM05D005271 ORTHO05D006072 7.3e-29 130.6 103 63.1
Rhsim12G0144200 Rhododendron simsii HOM05D005271 ORTHO05D006072 7.3e-29 130.6 127 57.5
HanXRQChr06g0184021 Helianthus annuus HOM05D005271 ORTHO05D006072 9.5e-29 130.2 106 63.2
TAR627G0156 Trochodendron aralioides HOM05D005271 ORTHO05D006072 1.2e-28 129.8 104 61.5
MSTRG.22460 Avicennia marina HOM05D005271 ORTHO05D006072 3.6e-28 128.3 102 61.8
Peaxi162Scf00004g02726 Petunia axillaris HOM05D005271 ORTHO05D006072 3.6e-28 128.3 125 55.2
BcaB01g04025 Brassica carinata HOM05D005271 ORTHO05D006072 1.4e-27 126.3 99 60.6
GSVIVG01012142001 Vitis vinifera HOM05D005271 ORTHO05D006072 1.4e-27 126.3 93 69.9
Oeu021212.1 Olea europaea HOM05D005271 ORTHO05D006072 2.3e-27 125.6 106 62.3
CDE05G1696 Ceratophyllum demersum HOM05D005271 ORTHO05D006072 3.1e-27 125.2 105 63.8
Sc10g0007720 Simmondsia chinensis HOM05D005271 ORTHO05D006072 8.9e-27 123.6 96 62.5
Sopen11g025310 Solanum pennellii HOM05D005271 ORTHO05D006072 1.2e-26 123.2 93 66.7
C04p18180 Brassica napus HOM05D005271 ORTHO05D006072 1.5e-26 122.9 105 59.0
BolC4t23374H Brassica oleracea HOM05D005271 ORTHO05D006072 1.5e-26 122.9 105 59.0
CDE05G0701 Ceratophyllum demersum HOM05D005271 ORTHO05D006072 1.5e-26 122.9 107 61.7
Cc03_g07280 Coffea canephora HOM05D005271 ORTHO05D006072 3.4e-26 121.7 93 67.7
A05p13810 Brassica napus HOM05D005271 ORTHO05D006072 9.8e-26 120.2 103 57.3
EL10Ac1g00803 Beta vulgaris HOM05D005271 ORTHO05D006072 1.7e-25 119.4 96 60.4
BcaC02g11279 Brassica carinata HOM05D005271 ORTHO05D006072 1.7e-25 119.4 105 57.1
Ah.01g016950 Amaranthus hybridus HOM05D005271 ORTHO05D006072 3.7e-25 118.2 89 62.9
ATR1120G033 Amborella trichopoda HOM05D005271 ORTHO05D006072 1.1e-24 116.7 107 54.2
SalBow1G3231 Salvia bowleyana HOM05D005271 ORTHO05D006072 1.1e-24 116.7 104 61.5
BcaB02g10411 Brassica carinata HOM05D000896 ORTHO05D006072 1.4e-24 116.3 105 56.2
SalBow6G1192 Salvia bowleyana HOM05D005271 ORTHO05D006072 2.4e-24 115.5 104 60.6
SGA_v2.0_scaffold118G32500 Striga asiatica HOM05D005271 ORTHO05D006072 3.2e-24 115.2 89 65.2
HPP92_012976 Vanilla planifolia HOM05D005271 ORTHO05D006072 5.4e-24 114.4 106 55.7
AUR62023913 Chenopodium quinoa HOM05D005271 ORTHO05D006072 2.0e-23 112.5 95 60.0
unitig_0.g914 Utricularia gibba HOM05D000362 ORTHO05D000325 1.3e-22 109.8 105 54.3
SalBow7G2991 Salvia bowleyana HOM05D005271 ORTHO05D006072 3.9e-22 108.2 102 55.9
Haze_05264 Corylus avellana HOM05D005271 ORTHO05D006072 5.0e-22 107.8 74 74.3
AUR62038333 Chenopodium quinoa HOM05D005271 ORTHO05D006072 6.6e-22 107.5 90 60.0
Zm00001eb071020 Zea mays HOM05D005271 ORTHO05D006072 1.5e-21 106.3 103 55.3
COL.COLO4_15978 Corchorus olitorius HOM05D005271 ORTHO05D006072 3.3e-21 105.1 74 70.3
Os04g0612900 Oryza sativa ssp. japonica HOM05D005271 ORTHO05D006072 4.3e-21 104.8 92 60.9
Eucgr.H02355 Eucalyptus grandis HOM05D005271 ORTHO05D006072 2.3e-19 99.0 74 68.9
CSS0024418 Camellia sinensis var. sinensis HOM05D005271 ORTHO05D006072 5.2e-19 97.8 75 72.0
Hund17073 Selenicereus undatus HOM05D005271 ORTHO05D006072 1.9e-16 89.4 63 69.8
SMO300G0007 Selaginella moellendorffii HOM05D005271 ORTHO05D006072 4.1e-16 88.2 83 54.2
PGSC0003DMG400010917 Solanum tuberosum HOM05D005271 ORTHO05D006072 1.6e-15 86.3 73 60.3
EL10Ac9g21107 Beta vulgaris HOM05D005271 ORTHO05D006072 2.7e-15 85.5 66 62.1
MBI02_g01139_MAGBIO Magnolia biondii HOM05D005271 ORTHO05D006072 2.7e-15 85.5 76 64.5
AUR62004132 Chenopodium quinoa HOM05D005271 ORTHO05D006072 4.6e-15 84.7 61 67.2
Mapoly0098s0021 Marchantia polymorpha HOM05D005271 ORTHO05D006072 1.0e-14 83.6 108 42.6
Hund00748 Selenicereus undatus HOM05D005271 ORTHO05D006072 5.1e-14 81.3 67 64.2
Pp3c12_11530 Physcomitrium patens HOM05D005271 ORTHO05D006072 3.3e-13 78.6 100 44.0
MBI14_g01725_MAGBIO Magnolia biondii HOM05D005271 ORTHO05D006072 4.7e-12 74.7 74 60.8
Zm00001eb430740 Zea mays HOM05D005271 ORTHO05D006072 3.4e-10 68.6 75 53.3
Aqoxy3G03156 Aquilegia oxysepala HOM05D005271 ORTHO05D006072 4.4e-10 68.2 70 61.4
FAN19G2356 Fragaria x ananassa HOM05D029494 ORTHO05D035663 1.1e-08 63.5 42 81.0
CBR_g30301 Chara braunii HOM05D005271 ORTHO05D006072 2.7e-07 58.9 69 44.9


User provided reference genes

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