Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN11G1371 Fragaria x ananassa HOM05D005256 ORTHO05D006491 3.2e-118 428.7 263 100.0
FAN16G0515 Fragaria x ananassa HOM05D005256 ORTHO05D006491 1.6e-106 389.8 263 93.2
FAN25G1093 Fragaria x ananassa HOM05D005256 ORTHO05D006491 1.8e-105 386.3 264 93.6
FAN21G0853 Fragaria x ananassa HOM05D005256 ORTHO05D006491 1.2e-83 313.9 215 97.2
FvH4_3g13370 Fragaria vesca HOM05D005256 ORTHO05D006491 7.5e-83 311.2 216 97.2
FAN25G0981 Fragaria x ananassa HOM05D005256 ORTHO05D006491 1.4e-76 290.4 216 94.4
RcHm_v2.0_Chr5g0022081 Rosa chinensis HOM05D005256 ORTHO05D006491 5.4e-65 251.9 152 88.2
MD10G1224100 Malus domestica HOM05D005256 ORTHO05D006491 3.9e-55 219.2 155 78.1
MD05G1242300 Malus domestica HOM05D005256 ORTHO05D006491 2.5e-54 216.5 147 81.0
Prupe.4G121100 Prunus persica HOM05D005256 ORTHO05D006491 5.2e-52 208.8 135 80.7
QL11p010746 Quercus lobata HOM05D005256 ORTHO05D006491 8.3e-50 201.4 152 72.4
Atru.chr10.203 Acer truncatum HOM05D005256 ORTHO05D006491 7.0e-49 198.4 146 74.7
Oeu005126.1 Olea europaea HOM05D005256 ORTHO05D006491 4.6e-48 195.7 154 70.8
Nn1g09867 Nelumbo nucifera HOM05D005256 ORTHO05D006491 6.6e-47 191.8 150 70.0
Dinv07938 Davidia involucrata HOM05D005256 ORTHO05D006491 8.6e-47 191.4 140 73.6
Dinv18415 Davidia involucrata HOM05D005256 ORTHO05D006491 8.6e-47 191.4 140 73.6
Ciclev10016618m.g Citrus clementina HOM05D005256 ORTHO05D006491 1.1e-46 191.0 144 72.2
Ca_02405_v3 Cicer arietinum L. HOM05D005256 ORTHO05D006491 1.5e-46 190.7 155 67.7
Lalb_Chr18g0051841 Lupinus albus HOM05D005256 ORTHO05D006491 3.3e-46 189.5 155 67.7
Lj6g0014214 Lotus japonicus HOM05D005256 ORTHO05D006491 4.3e-46 189.1 144 73.6
CiPaw.09G140800 Carya illinoinensis HOM05D005256 ORTHO05D006491 5.6e-46 188.7 138 74.6
Rhsim13G0136300 Rhododendron simsii HOM05D005256 ORTHO05D006491 5.6e-46 188.7 215 60.0
TPR.G31382 Trifolium pratense HOM05D005256 ORTHO05D006491 1.2e-45 187.6 155 67.7
Sabra03G0114000 Salix brachista HOM05D005256 ORTHO05D006491 4.7e-45 185.7 147 70.7
Oeu052922.1 Olea europaea HOM05D005256 ORTHO05D006491 8.1e-45 184.9 221 54.3
Potri.003G157100 Populus trichocarpa HOM05D005256 ORTHO05D006491 8.1e-45 184.9 156 67.3
Medtr2g437530 Medicago truncatula HOM05D005256 ORTHO05D006491 1.1e-44 184.5 155 69.0
Eucgr.D00001 Eucalyptus grandis HOM05D005256 ORTHO05D006491 1.4e-44 184.1 144 71.5
Haze_05185 Corylus avellana HOM05D005256 ORTHO05D006491 1.8e-44 183.7 138 71.7
MSTRG.14820 Avicennia marina HOM05D005256 ORTHO05D006491 4.0e-44 182.6 157 66.9
Manes.16G060225 Manihot esculenta HOM05D005256 ORTHO05D006491 5.2e-44 182.2 134 73.9
TAR624G1249 Trochodendron aralioides HOM05D005256 ORTHO05D006491 8.9e-44 181.4 161 64.6
MBI07_g44405_MAGBIO Magnolia biondii HOM05D005256 ORTHO05D006491 2.0e-43 180.3 155 64.5
Psat1g152160 Pisum sativum HOM05D005256 ORTHO05D006491 2.0e-43 180.3 155 67.7
arahy.Tifrunner.gnm1.ann1.QDE700 Arachis hypogaea HOM05D005256 ORTHO05D006491 7.5e-43 178.3 139 70.5
Potri.001G073900 Populus trichocarpa HOM05D005256 ORTHO05D006491 7.5e-43 178.3 155 64.5
Glyma.09G047200 Glycine max HOM05D005256 ORTHO05D006491 1.3e-42 177.6 146 69.2
Sabra01G0052200 Salix brachista HOM05D005256 ORTHO05D006491 1.3e-42 177.6 147 68.7
CSS0021462 Camellia sinensis var. sinensis HOM05D005256 ORTHO05D006491 2.9e-42 176.4 215 64.2
Glyma.15G154700 Glycine max HOM05D005256 ORTHO05D006491 3.7e-42 176.0 152 67.8
vmacro03574 Vaccinium macrocarpon HOM05D005256 ORTHO05D006491 8.3e-42 174.9 140 67.9
arahy.Tifrunner.gnm1.ann1.98CSRD Arachis hypogaea HOM05D005256 ORTHO05D006491 1.1e-41 174.5 136 70.6
EL10Ac7g17298 Beta vulgaris HOM05D005256 ORTHO05D006491 1.1e-41 174.5 155 63.9
TWI63G0333 Tripterygium wilfordii HOM05D005256 ORTHO05D006491 1.1e-41 174.5 152 65.8
CSS0003949 Camellia sinensis var. sinensis HOM05D005256 ORTHO05D006491 1.4e-41 174.1 135 68.1
ECA232G1901 Erigeron canadensis HOM05D005256 ORTHO05D006491 1.4e-41 174.1 132 69.7
Lalb_Chr15g0083621 Lupinus albus HOM05D005256 ORTHO05D006491 1.4e-41 174.1 140 67.9
Peaxi162Scf00888g00114 Petunia axillaris HOM05D005256 ORTHO05D006491 1.9e-41 173.7 139 66.2
Phvul.009G245700 Phaseolus vulgaris HOM05D005256 ORTHO05D006491 1.9e-41 173.7 155 63.2
AUR62040985 Chenopodium quinoa HOM05D005256 ORTHO05D006491 3.2e-41 172.9 155 66.5
Hma1.2p1_0082F.1_g042560 Hydrangea macrophylla HOM05D005256 ORTHO05D006491 7.1e-41 171.8 154 64.3
CAN.G465.5 Capsicum annuum HOM05D005256 ORTHO05D006491 1.6e-40 170.6 158 60.8
Solyc10g005100.3 Solanum lycopersicum HOM05D005256 ORTHO05D006491 2.1e-40 170.2 155 61.3
Ah.15g091820 Amaranthus hybridus HOM05D005256 ORTHO05D006491 3.5e-40 169.5 150 62.0
ATR0737G015 Amborella trichopoda HOM05D005256 ORTHO05D006491 6.0e-40 168.7 154 63.0
HanXRQChr15g0487481 Helianthus annuus HOM05D005256 ORTHO05D006491 6.0e-40 168.7 132 65.9
Sopen10g001120 Solanum pennellii HOM05D005256 ORTHO05D006491 7.8e-40 168.3 161 59.6
COL.COLO4_25022 Corchorus olitorius HOM05D005256 ORTHO05D006491 1.0e-39 167.9 134 71.6
Lsat_1_v5_gn_2_59820 Lactuca sativa HOM05D005256 ORTHO05D006491 1.0e-39 167.9 153 60.1
PGSC0003DMG400011293 Solanum tuberosum HOM05D005256 ORTHO05D006491 1.0e-39 167.9 145 63.4
Nitab4.5_0004778g0020 Nicotiana tabacum HOM05D005256 ORTHO05D006491 1.3e-39 167.5 140 65.0
TAR626G1126 Trochodendron aralioides HOM05D005256 ORTHO05D006491 1.3e-39 167.5 132 70.5
Lsat_1_v5_gn_8_107621 Lactuca sativa HOM05D005256 ORTHO05D006491 2.3e-39 166.8 132 65.2
GSVIVG01001340001 Vitis vinifera HOM05D005256 ORTHO05D006491 2.3e-39 166.8 139 66.9
CiPaw.10G108500 Carya illinoinensis HOM05D005256 ORTHO05D006491 3.0e-39 166.4 136 68.4
CANSAT35G0328 Cannabis sativa HOM05D005256 ORTHO05D006491 3.9e-39 166.0 139 64.0
Migut.L00006 Erythranthe guttata HOM05D005256 ORTHO05D006491 3.9e-39 166.0 132 66.7
VMungo1309G1298 Vigna mungo HOM05D005256 ORTHO05D006491 6.6e-39 165.2 134 65.7
THA.LOC104811953 Tarenaya hassleriana HOM05D005256 ORTHO05D006491 1.9e-38 163.7 172 55.8
CARHR227090 Cardamine hirsuta HOM05D005256 ORTHO05D006491 2.5e-38 163.3 156 61.5
Cpa.g.sc30.65 Carica papaya HOM05D005256 ORTHO05D006491 3.3e-38 162.9 154 60.4
Aa31LG6G2690 Aethionema arabicum HOM05D005256 ORTHO05D006491 4.3e-38 162.5 139 61.2
THA.LOC104812925 Tarenaya hassleriana HOM05D005256 ORTHO05D006491 7.3e-38 161.8 153 60.8
SalBow7G1744 Salvia bowleyana HOM05D005256 ORTHO05D006491 9.5e-38 161.4 133 65.4
Hund20133 Selenicereus undatus HOM05D005256 ORTHO05D006491 1.2e-37 161.0 158 59.5
AT4G20260 Arabidopsis thaliana HOM05D005256 ORTHO05D006491 2.8e-37 159.8 152 62.5
CDE10G0480 Ceratophyllum demersum HOM05D005256 ORTHO05D006491 4.7e-37 159.1 141 61.0
C07p50830 Brassica napus HOM05D005256 ORTHO05D006491 6.2e-37 158.7 155 59.4
ECA238G2220 Erigeron canadensis HOM05D005256 ORTHO05D006491 1.1e-36 157.9 132 63.6
BolC7t45581H Brassica oleracea HOM05D005256 ORTHO05D006491 1.4e-36 157.5 152 59.9
AL7G33640 Arabidopsis lyrata HOM05D005256 ORTHO05D006491 1.8e-36 157.1 139 62.6
BcaNung03497 Brassica carinata HOM05D005256 ORTHO05D006491 2.4e-36 156.8 139 61.9
BraA03t14315Z Brassica rapa HOM05D005256 ORTHO05D006491 2.4e-36 156.8 152 59.9
A03p52380 Brassica napus HOM05D005256 ORTHO05D006491 3.1e-36 156.4 152 59.2
HanXRQChr14g0439031 Helianthus annuus HOM05D005256 ORTHO05D006491 4.0e-36 156.0 153 56.2
Thhalv10026094m.g Eutrema salsugineum HOM05D005256 ORTHO05D006491 5.2e-36 155.6 152 59.2
Sc17g0004300 Simmondsia chinensis HOM05D005256 ORTHO05D006491 6.8e-36 155.2 140 62.1
CDE10G1097 Ceratophyllum demersum HOM05D005256 ORTHO05D006491 8.9e-36 154.8 136 62.5
BcaC09g51326 Brassica carinata HOM05D005256 ORTHO05D006491 1.5e-35 154.1 152 59.9
A01p11960 Brassica napus HOM05D005256 ORTHO05D006491 1.5e-35 154.1 152 59.9
C01p14230 Brassica napus HOM05D005256 ORTHO05D006491 1.5e-35 154.1 152 59.9
BolC1t01388H Brassica oleracea HOM05D005256 ORTHO05D006491 1.5e-35 154.1 152 59.9
BraA01t01138Z Brassica rapa HOM05D005256 ORTHO05D006491 1.5e-35 154.1 152 59.9
Carub.0007s2091 Capsella rubella HOM05D005256 ORTHO05D006491 1.5e-35 154.1 145 58.6
Thecc.02G000700 Theobroma cacao HOM05D005256 ORTHO05D006491 1.5e-35 154.1 127 64.6
HPP92_008810 Vanilla planifolia HOM05D005256 ORTHO05D006491 2.0e-35 153.7 131 65.6
BcaC06g30648 Brassica carinata HOM05D005256 ORTHO05D006491 2.6e-35 153.3 152 58.6
MBI06_g04184_MAGBIO Magnolia biondii HOM05D005256 ORTHO05D006491 3.4e-35 152.9 149 59.1
HanXRQChr09g0257711 Helianthus annuus HOM05D005256 ORTHO05D006491 2.2e-34 150.2 132 62.1
Sp7g18620 Schrenkiella parvula HOM05D005256 ORTHO05D006491 4.9e-34 149.1 139 59.7
Peaxi162Scf01310g00311 Petunia axillaris HOM05D005256 ORTHO05D006491 2.4e-33 146.7 138 58.7
Cc09_g04590 Coffea canephora HOM05D005256 ORTHO05D006491 3.2e-33 146.4 133 63.2
PSO541G2657 Papaver somniferum HOM05D005256 ORTHO05D006491 1.6e-32 144.1 154 55.8
PSO675G8904 Papaver somniferum HOM05D005256 ORTHO05D006491 1.6e-32 144.1 154 55.8
CDE02G1470 Ceratophyllum demersum HOM05D005256 ORTHO05D006491 1.0e-31 141.4 141 58.9
Os02g0285300 Oryza sativa ssp. japonica HOM05D005256 ORTHO05D006491 1.5e-30 137.5 147 57.8
AUR62042105 Chenopodium quinoa HOM05D005256 ORTHO05D006491 2.5e-30 136.7 155 56.8
BcaNung03716 Brassica carinata HOM05D005256 ORTHO05D006491 7.3e-30 135.2 148 56.8
DCAR_003732 Daucus carota HOM05D005256 ORTHO05D006491 9.6e-30 134.8 132 59.1
Nitab4.5_0000217g0040 Nicotiana tabacum HOM05D005256 ORTHO05D006491 6.9e-28 128.6 137 55.5
Aa31LG9G8540 Aethionema arabicum HOM05D005256 ORTHO05D006491 9.0e-28 128.3 155 52.3
Nitab4.5_0012748g0020 Nicotiana tabacum HOM05D005256 ORTHO05D006491 5.8e-27 125.6 104 64.4
CDE09G1225 Ceratophyllum demersum HOM05D005256 ORTHO05D006491 1.3e-26 124.4 139 53.2
C07p27480 Brassica napus HOM05D005256 ORTHO05D006491 1.1e-25 121.3 161 49.1
A06p47070 Brassica napus HOM05D005256 ORTHO05D006491 1.9e-25 120.6 162 50.0
BraA06t27579Z Brassica rapa HOM05D005256 ORTHO05D006491 1.9e-25 120.6 162 50.0
BcaC06g34533 Brassica carinata HOM05D005256 ORTHO05D006491 2.4e-25 120.2 162 49.4
BcaB07g30940 Brassica carinata HOM05D005256 ORTHO05D006491 4.2e-25 119.4 154 48.7
BolC7t43278H Brassica oleracea HOM05D005256 ORTHO05D006491 5.4e-25 119.0 161 48.4
BcaB07g30517 Brassica carinata HOM05D005256 ORTHO05D006491 1.2e-24 117.9 162 45.7
A09p21180 Brassica napus HOM05D005256 ORTHO05D006491 2.1e-24 117.1 153 47.7
BraA09t37724Z Brassica rapa HOM05D005256 ORTHO05D006491 2.1e-24 117.1 153 47.7
BcaC04g21824 Brassica carinata HOM05D005256 ORTHO05D006491 7.8e-24 115.2 167 44.9
C09p27010 Brassica napus HOM05D005256 ORTHO05D006491 7.8e-24 115.2 167 44.9
BolC9t55584H Brassica oleracea HOM05D005256 ORTHO05D006491 7.8e-24 115.2 167 44.9
Nitab4.5_0001253g0020 Nicotiana tabacum HOM05D005256 ORTHO05D006491 1.7e-23 114.0 136 51.5
MBI06_g26562_MAGBIO Magnolia biondii HOM05D005256 ORTHO05D006491 3.0e-23 113.2 98 62.2
Lalb_Chr20g0114421 Lupinus albus HOM05D005256 ORTHO05D006491 3.9e-23 112.8 87 70.1
Sp2g09430 Schrenkiella parvula HOM05D005256 ORTHO05D006491 6.6e-23 112.1 160 45.6
Zm00001eb236850 Zea mays HOM05D005256 ORTHO05D006491 1.1e-22 111.3 115 58.3
Zm00001eb339340 Zea mays HOM05D005256 ORTHO05D006491 1.3e-21 107.8 151 49.7
Zm00001eb119130 Zea mays HOM05D005256 ORTHO05D006491 2.8e-21 106.7 136 50.7
Lsat_1_v5_gn_9_9820 Lactuca sativa HOM05D005256 ORTHO05D006491 9.0e-20 101.7 102 57.8
Os01g0233000 Oryza sativa ssp. japonica HOM05D005256 ORTHO05D006491 9.0e-20 101.7 153 46.4
C02p45090 Brassica napus HOM05D005256 ORTHO05D006491 2.2e-18 97.1 166 42.2
BolC2t10548H Brassica oleracea HOM05D005256 ORTHO05D006491 2.2e-18 97.1 166 42.2
SGA_v2.0_scaffold51G18675 Striga asiatica HOM05D003701 ORTHO05D004771 1.9e-14 84.0 68 66.2
FvH4_7g19390 Fragaria vesca HOM05D036880 ORTHO05D006491 1.1e-09 68.2 59 55.9
FvH4_6g17050 Fragaria vesca HOM05D036880 ORTHO05D045991 3.3e-06 56.6 48 62.5
Mapoly0087s0006 Marchantia polymorpha HOM05D005256 ORTHO05D006491 4.3e-06 56.2 155 31.6
Zm00001eb381370 Zea mays HOM05D005256 ORTHO05D006491 5.6e-06 55.8 60 58.3


User provided reference genes

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