Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN11G1314 Fragaria x ananassa HOM05D004191 ORTHO05D004887 1.7e-111 406.0 200 100.0
FvH4_3g21920 Fragaria vesca HOM05D004191 ORTHO05D004887 1.0e-100 370.2 200 93.5
FAN16G1028 Fragaria x ananassa HOM05D004191 ORTHO05D004887 1.0e-100 370.2 200 93.5
RcHm_v2.0_Chr5g0037731 Rosa chinensis HOM05D004191 ORTHO05D004887 1.0e-100 370.2 200 93.5
FAN21G0017 Fragaria x ananassa HOM05D004191 ORTHO05D004887 2.3e-100 369.0 200 93.0
FAN25G1832 Fragaria x ananassa HOM05D004191 ORTHO05D004887 3.0e-100 368.6 200 92.5
Prupe.4G204700 Prunus persica HOM05D004191 ORTHO05D004887 3.0e-100 368.6 200 93.0
MD03G1210500 Malus domestica HOM05D004191 ORTHO05D004887 5.1e-100 367.9 200 92.0
MD11G1225200 Malus domestica HOM05D004191 ORTHO05D004887 1.5e-99 366.3 200 91.5
Duzib093G1201 Durio zibethinus HOM05D004191 ORTHO05D004887 2.8e-98 362.1 200 90.0
Duzib106G0849 Durio zibethinus HOM05D004191 ORTHO05D004887 2.4e-97 359.0 200 89.0
QL08p013180 Quercus lobata HOM05D004191 ORTHO05D004887 5.3e-97 357.8 199 88.4
Thecc.05G140700 Theobroma cacao HOM05D004191 ORTHO05D004887 5.3e-97 357.8 200 89.0
Gohir.A09G118400 Gossypium hirsutum HOM05D004191 ORTHO05D004887 6.9e-97 357.5 200 88.5
Gohir.D09G115300 Gossypium hirsutum HOM05D004191 ORTHO05D004887 6.9e-97 357.5 200 88.5
Gorai.006G132900 Gossypium raimondii HOM05D004191 ORTHO05D004887 6.9e-97 357.5 200 88.5
CiPaw.12G126500 Carya illinoinensis HOM05D004191 ORTHO05D004887 1.2e-96 356.7 200 87.5
CSS0034391 Camellia sinensis var. sinensis HOM05D004191 ORTHO05D004887 2.0e-96 355.9 200 88.0
CiPaw.11G184500 Carya illinoinensis HOM05D004191 ORTHO05D004887 2.0e-96 355.9 200 87.0
Ciclev10009626m.g Citrus clementina HOM05D004191 ORTHO05D004887 2.0e-96 355.9 200 87.5
Lj1A865T18 Lonicera japonica HOM05D004191 ORTHO05D004887 2.0e-96 355.9 200 87.5
Sabra16G0284100 Salix brachista HOM05D004191 ORTHO05D004887 2.0e-96 355.9 200 89.0
Potri.001G418400 Populus trichocarpa HOM05D004191 ORTHO05D004887 2.6e-96 355.5 200 88.5
Cc05_g13280 Coffea canephora HOM05D004191 ORTHO05D004887 3.4e-96 355.1 200 87.5
GSVIVG01002004001 Vitis vinifera HOM05D004191 ORTHO05D004887 3.4e-96 355.1 200 89.0
Cpa.g.sc97.62 Carica papaya HOM05D004191 ORTHO05D004887 4.5e-96 354.8 200 87.0
Lalb_Chr19g0134771 Lupinus albus HOM05D004191 ORTHO05D004887 4.5e-96 354.8 200 87.5
COL.COLO4_05062 Corchorus olitorius HOM05D004191 ORTHO05D004887 7.6e-96 354.0 200 88.5
ECA236G4841 Erigeron canadensis HOM05D004191 ORTHO05D004887 7.6e-96 354.0 200 88.0
Eucgr.F03430 Eucalyptus grandis HOM05D004191 ORTHO05D004887 7.6e-96 354.0 196 89.8
CANSAT80G0944 Cannabis sativa HOM05D004191 ORTHO05D004887 1.0e-95 353.6 200 88.0
PGR031G0276 Punica granatum HOM05D004191 ORTHO05D004887 1.0e-95 353.6 197 88.8
HanXRQChr02g0054141 Helianthus annuus HOM05D004191 ORTHO05D004887 1.7e-95 352.8 200 87.0
Manes.03G123300 Manihot esculenta HOM05D004191 ORTHO05D004887 1.7e-95 352.8 200 87.5
Oeu032442.1 Olea europaea HOM05D004191 ORTHO05D004887 1.7e-95 352.8 200 86.5
Lsat_1_v5_gn_7_108481 Lactuca sativa HOM05D004191 ORTHO05D004887 2.2e-95 352.4 200 88.0
Lj3g0027602 Lotus japonicus HOM05D004191 ORTHO05D004887 2.2e-95 352.4 200 86.0
CSS0028201 Camellia sinensis var. sinensis HOM05D004191 ORTHO05D004887 2.9e-95 352.1 200 87.5
Phvul.011G139700 Phaseolus vulgaris HOM05D004191 ORTHO05D004887 2.9e-95 352.1 200 87.0
arahy.Tifrunner.gnm1.ann1.HY89VY Arachis hypogaea HOM05D004191 ORTHO05D004887 3.8e-95 351.7 200 86.0
Dinv40713 Davidia involucrata HOM05D004191 ORTHO05D004887 3.8e-95 351.7 200 87.5
Nitab4.5_0002838g0150 Nicotiana tabacum HOM05D004191 ORTHO05D004887 3.8e-95 351.7 200 87.5
MBI02_g10101_MAGBIO Magnolia biondii HOM05D004191 ORTHO05D004887 4.9e-95 351.3 200 86.0
Nitab4.5_0005420g0050 Nicotiana tabacum HOM05D004191 ORTHO05D004887 4.9e-95 351.3 200 87.0
Oeu007633.1 Olea europaea HOM05D004191 ORTHO05D004887 4.9e-95 351.3 200 86.5
Ca_18852_v3 Cicer arietinum L. HOM05D004191 ORTHO05D004887 6.5e-95 350.9 200 86.5
TAR371G0103 Trochodendron aralioides HOM05D004191 ORTHO05D004887 6.5e-95 350.9 200 86.0
VMungo1127G0852 Vigna mungo HOM05D004191 ORTHO05D004887 6.5e-95 350.9 200 86.0
arahy.Tifrunner.gnm1.ann1.B9KZG1 Arachis hypogaea HOM05D004191 ORTHO05D004887 8.4e-95 350.5 200 86.0
THA.LOC104799884 Tarenaya hassleriana HOM05D004191 ORTHO05D004887 8.4e-95 350.5 200 86.5
ATR0609G026 Amborella trichopoda HOM05D004191 ORTHO05D004887 1.4e-94 349.7 200 86.5
Glyma.06G269400 Glycine max HOM05D004191 ORTHO05D004887 1.4e-94 349.7 200 86.0
Glyma.12G135200 Glycine max HOM05D004191 ORTHO05D004887 1.4e-94 349.7 200 86.0
Actinidia34670 Actinidia chinensis HOM05D004191 ORTHO05D004887 1.9e-94 349.4 200 86.5
Lalb_Chr03g0030141 Lupinus albus HOM05D004191 ORTHO05D004887 2.5e-94 349.0 200 85.5
PGSC0003DMG400005405 Solanum tuberosum HOM05D004191 ORTHO05D004887 2.5e-94 349.0 200 86.0
TPR.G25893 Trifolium pratense HOM05D004191 ORTHO05D004887 3.2e-94 348.6 200 86.0
TWI39G0061 Tripterygium wilfordii HOM05D004191 ORTHO05D004887 3.2e-94 348.6 200 86.5
MELO3C018102.2 Cucumis melo HOM05D004191 ORTHO05D004887 4.2e-94 348.2 200 85.5
CsaV3_3G023130 Cucumis sativus L. HOM05D004191 ORTHO05D004887 4.2e-94 348.2 200 85.5
TAR626G0300 Trochodendron aralioides HOM05D004191 ORTHO05D004887 4.2e-94 348.2 200 85.5
AL8G30180 Arabidopsis lyrata HOM05D004191 ORTHO05D004887 5.5e-94 347.8 200 85.5
TWI38G1569 Tripterygium wilfordii HOM05D004191 ORTHO05D004887 5.5e-94 347.8 208 82.2
ClCG05G014740 Citrullus lanatus HOM05D004191 ORTHO05D004887 7.1e-94 347.4 241 73.4
PSO675G8300 Papaver somniferum HOM05D004191 ORTHO05D004887 7.1e-94 347.4 200 84.5
PSO782G4612 Papaver somniferum HOM05D004191 ORTHO05D004887 7.1e-94 347.4 203 84.2
Sed0000628 Sechium edule HOM05D004191 ORTHO05D004887 7.1e-94 347.4 200 84.5
Solyc10g006490.3 Solanum lycopersicum HOM05D004191 ORTHO05D004887 7.1e-94 347.4 200 86.0
Aqoxy4G00334 Aquilegia oxysepala HOM05D004191 ORTHO05D004887 9.3e-94 347.1 200 85.0
AT5G54750 Arabidopsis thaliana HOM05D004191 ORTHO05D004887 1.6e-93 346.3 200 84.5
CARHR268090 Cardamine hirsuta HOM05D004191 ORTHO05D004887 1.6e-93 346.3 200 85.0
Peaxi162Scf00082g00016 Petunia axillaris HOM05D004191 ORTHO05D004887 1.6e-93 346.3 200 85.0
Rhsim12G0150700 Rhododendron simsii HOM05D004191 ORTHO05D004887 1.6e-93 346.3 200 84.5
vmacro16476 Vaccinium macrocarpon HOM05D004191 ORTHO05D004887 1.6e-93 346.3 200 84.5
Carub.0008s1502 Capsella rubella HOM05D004191 ORTHO05D004887 2.1e-93 345.9 200 84.5
Hma1.2p1_0049F.1_g028640 Hydrangea macrophylla HOM05D004191 ORTHO05D004887 2.1e-93 345.9 199 85.9
Hund11592 Selenicereus undatus HOM05D004191 ORTHO05D004887 2.7e-93 345.5 200 85.5
PSO170G1932 Papaver somniferum HOM05D004191 ORTHO05D004887 3.5e-93 345.1 200 84.0
Solyc01g096530.3 Solanum lycopersicum HOM05D004191 ORTHO05D004887 3.5e-93 345.1 200 85.5
Thhalv10019192m.g Eutrema salsugineum HOM05D004191 ORTHO05D004887 4.6e-93 344.7 200 84.0
Aa31LG3G10650 Aethionema arabicum HOM05D004191 ORTHO05D004887 6.0e-93 344.4 200 84.5
Eucgr.F00980 Eucalyptus grandis HOM05D004191 ORTHO05D004887 7.9e-93 344.0 200 83.0
SpUn0117_0020 Schrenkiella parvula HOM05D004191 ORTHO05D004887 7.9e-93 344.0 200 84.0
CAN.G134.12 Capsicum annuum HOM05D004191 ORTHO05D004887 1.0e-92 343.6 200 84.5
Sopen01g040260 Solanum pennellii HOM05D004191 ORTHO05D004887 1.0e-92 343.6 200 85.5
SGA_v2.0_scaffold416G51230 Striga asiatica HOM05D004191 ORTHO05D004887 1.0e-92 343.6 200 83.5
BcaB07g31034 Brassica carinata HOM05D004191 ORTHO05D004887 1.8e-92 342.8 200 83.5
A09p20070 Brassica napus HOM05D004191 ORTHO05D004887 1.8e-92 342.8 200 83.5
C09p25460 Brassica napus HOM05D004191 ORTHO05D004887 1.8e-92 342.8 200 83.5
BraA09t37620Z Brassica rapa HOM05D004191 ORTHO05D004887 1.8e-92 342.8 200 83.5
Sed0012224 Sechium edule HOM05D004191 ORTHO05D004887 3.0e-92 342.0 200 83.5
SalBow7G2717 Salvia bowleyana HOM05D004191 ORTHO05D004887 5.1e-92 341.3 200 83.0
Sp4g10480 Schrenkiella parvula HOM05D004191 ORTHO05D004887 5.1e-92 341.3 200 83.0
ATR0109G002 Amborella trichopoda HOM05D004191 ORTHO05D004887 6.7e-92 340.9 200 84.0
PGR083G1136 Punica granatum HOM05D004191 ORTHO05D004887 8.7e-92 340.5 206 83.5
HPP92_013205 Vanilla planifolia HOM05D001003 ORTHO05D004887 1.1e-91 340.1 199 82.9
Ah.02g116780 Amaranthus hybridus HOM05D004191 ORTHO05D004887 1.5e-91 339.7 200 81.5
Medtr4g081170 Medicago truncatula HOM05D004191 ORTHO05D004887 2.5e-91 339.0 200 83.5
EL10Ac5g13057 Beta vulgaris HOM05D004191 ORTHO05D004887 4.3e-91 338.2 200 82.0
TPR.G24299 Trifolium pratense HOM05D004191 ORTHO05D004887 4.3e-91 338.2 199 84.4
CAN.G1110.10 Capsicum annuum HOM05D004191 ORTHO05D004887 5.7e-91 337.8 214 79.9
MSTRG.6892 Avicennia marina HOM05D004191 ORTHO05D004887 9.7e-91 337.0 200 82.0
Hund24114 Selenicereus undatus HOM05D004191 ORTHO05D004887 9.7e-91 337.0 211 80.1
Medtr8g027700 Medicago truncatula HOM05D004191 ORTHO05D004887 1.6e-90 336.3 200 83.0
Os03g0402000 Oryza sativa ssp. japonica HOM05D004191 ORTHO05D004887 2.8e-90 335.5 201 81.6
Os07g0642300 Oryza sativa ssp. japonica HOM05D004191 ORTHO05D004887 2.8e-90 335.5 201 81.6
CDE02G0163 Ceratophyllum demersum HOM05D004191 ORTHO05D004887 3.7e-90 335.1 200 80.0
Sc22g0000820 Simmondsia chinensis HOM05D004191 ORTHO05D004887 3.7e-90 335.1 200 81.5
Migut.H01854 Erythranthe guttata HOM05D004191 ORTHO05D004887 6.3e-90 334.3 200 81.0
Sopen10g002440 Solanum pennellii HOM05D004191 ORTHO05D004887 6.3e-90 334.3 219 78.1
Zm00001eb433090 Zea mays HOM05D004191 ORTHO05D004887 8.2e-90 334.0 200 81.5
Zm00001eb067130 Zea mays HOM05D004191 ORTHO05D004887 1.8e-89 332.8 200 81.0
MSTRG.12958 Avicennia marina HOM05D004191 ORTHO05D004887 2.4e-89 332.4 200 81.5
BolC9t55449H Brassica oleracea HOM05D004191 ORTHO05D004887 4.1e-89 331.6 219 76.7
SGA_v2.0_scaffold24G10288 Striga asiatica HOM05D004191 ORTHO05D004887 4.1e-89 331.6 200 80.0
Migut.M01809 Erythranthe guttata HOM05D004191 ORTHO05D004887 6.9e-89 330.9 194 82.5
arahy.Tifrunner.gnm1.ann1.T6DWBF Arachis hypogaea HOM05D004191 ORTHO05D004887 2.6e-88 328.9 200 81.0
Sc15g0001730 Simmondsia chinensis HOM05D004191 ORTHO05D004887 4.5e-88 328.2 200 80.0
Manes.15G076000 Manihot esculenta HOM05D004191 ORTHO05D004887 1.1e-86 323.6 198 79.3
unitig_0.g2386 Utricularia gibba HOM05D004191 ORTHO05D004887 9.3e-86 320.5 196 80.1
Eucgr.F00978 Eucalyptus grandis HOM05D004191 ORTHO05D004887 6.7e-84 314.3 182 83.0
Lsat_1_v5_gn_5_5821 Lactuca sativa HOM05D004191 ORTHO05D004887 8.7e-84 313.9 186 82.8
Nn1g08677 Nelumbo nucifera HOM05D004191 ORTHO05D004887 1.9e-83 312.8 180 85.6
Mapoly0006s0106 Marchantia polymorpha HOM05D004191 ORTHO05D004887 8.2e-82 307.4 200 74.0
Peaxi162Scf01434g00020 Petunia axillaris HOM05D004191 ORTHO05D004887 3.8e-79 298.5 200 76.0
AagrBONN_evm.TU.Sc2ySwM_344.5600 Anthoceros agrestis HOM05D004191 ORTHO05D004887 5.5e-78 294.7 194 71.6
AagrBONN_evm.TU.Sc2ySwM_344.5601 Anthoceros agrestis HOM05D004191 ORTHO05D004887 5.5e-78 294.7 194 71.6
SMO165G0074 Selaginella moellendorffii HOM05D004191 ORTHO05D004887 7.2e-78 294.3 200 72.0
AagrBONN_evm.TU.Sc2ySwM_362.1587 Anthoceros agrestis HOM05D004191 ORTHO05D004887 1.0e-76 290.4 194 70.6
BcaB07g30600 Brassica carinata HOM05D004191 ORTHO05D004887 1.0e-76 290.4 197 75.1
Nitab4.5_0002342g0090 Nicotiana tabacum HOM05D004191 ORTHO05D004887 3.0e-76 288.9 200 74.0
BcaC04g21960 Brassica carinata HOM05D004191 ORTHO05D004887 5.7e-75 284.6 167 83.2
CBR_g9060 Chara braunii HOM05D004191 ORTHO05D004887 7.4e-75 284.3 199 68.8
Nitab4.5_0002229g0200 Nicotiana tabacum HOM05D004191 ORTHO05D004887 7.4e-75 284.3 200 73.5
AagrBONN_evm.TU.Sc2ySwM_344.5599 Anthoceros agrestis HOM05D004191 ORTHO05D004887 2.2e-74 282.7 185 72.4
Hma1.2p1_0774F.1_g216345 Hydrangea macrophylla HOM05D004191 ORTHO05D004887 2.8e-74 282.3 172 81.4
arahy.Tifrunner.gnm1.ann1.N3PQ25 Arachis hypogaea HOM05D004191 ORTHO05D004887 2.4e-73 279.3 200 72.5
Dinv22301 Davidia involucrata HOM05D004191 ORTHO05D004887 1.5e-72 276.6 162 85.2
Pp3c6_29730 Physcomitrium patens HOM05D004191 ORTHO05D004887 7.7e-72 274.2 185 70.3
Peaxi162Scf01475g00001 Petunia axillaris HOM05D004191 ORTHO05D004887 3.2e-70 268.9 200 70.5
AUR62039960 Chenopodium quinoa HOM05D004191 ORTHO05D004887 3.6e-69 265.4 161 80.7
AUR62007507 Chenopodium quinoa HOM05D004191 ORTHO05D004887 1.0e-68 263.8 158 79.1
Cpa.g.sc2.173 Carica papaya HOM05D004191 ORTHO05D004887 1.3e-66 256.9 227 58.1
Peaxi162Scf08257g00003 Petunia axillaris HOM05D004191 ORTHO05D004887 2.6e-64 249.2 200 66.5
PGSC0003DMG400029125 Solanum tuberosum HOM05D004191 ORTHO05D004887 6.1e-61 238.0 200 62.5
Cre03.g145607 Chlamydomonas reinhardtii HOM05D004191 ORTHO05D004887 1.4e-60 236.9 198 58.1
Sp2g07630 Schrenkiella parvula HOM05D004191 ORTHO05D004887 1.8e-57 226.5 137 82.5
Cfa020410 Carpinus fangiana HOM05D004191 ORTHO05D004887 1.6e-53 213.4 103 95.1
AagrBONN_evm.TU.Sc2ySwM_362.1580 Anthoceros agrestis HOM05D004191 ORTHO05D004887 2.0e-51 206.5 140 71.4
COL.COLO4_37956 Corchorus olitorius HOM05D004191 ORTHO05D004887 2.8e-50 202.6 98 94.9
Psat7g161320 Pisum sativum HOM05D004191 ORTHO05D004887 1.1e-49 200.7 106 86.8
PRCOL_00004686 Prasinoderma coloniale HOM05D004191 ORTHO05D004887 7.7e-48 194.5 180 52.8
TWI38G1856 Tripterygium wilfordii HOM05D004191 ORTHO05D004887 5.0e-47 191.8 104 84.6
CDE05G2537 Ceratophyllum demersum HOM05D004191 ORTHO05D004887 2.5e-46 189.5 119 79.8
AUR62030012 Chenopodium quinoa HOM05D004191 ORTHO05D004887 2.8e-45 186.0 194 54.6
MCO14G457 Micromonas commoda HOM05D004191 ORTHO05D004887 1.8e-44 183.3 188 49.5
SEGI_28528 Sequoiadendron giganteum HOM05D004191 ORTHO05D004887 1.2e-43 180.6 98 81.6
Nn5g28123 Nelumbo nucifera HOM05D004191 ORTHO05D004887 2.5e-38 162.9 85 94.1
HanXRQChr11g0332951 Helianthus annuus HOM05D004191 ORTHO05D004887 1.1e-30 137.5 148 54.1
Pp3c2_32190 Physcomitrium patens HOM05D004191 ORTHO05D004887 2.1e-21 106.7 68 70.6
Cfa020409 Carpinus fangiana HOM05D004191 ORTHO05D004887 3.4e-19 99.4 52 94.2
COL.COLO4_37955 Corchorus olitorius HOM05D004191 ORTHO05D004887 6.4e-18 95.1 52 92.3
Haze_09622 Corylus avellana HOM05D004191 ORTHO05D004887 7.1e-17 91.7 49 91.8
Haze_09618 Corylus avellana HOM05D004191 ORTHO05D004887 1.1e-14 84.3 45 91.1
Actinidia19733 Actinidia chinensis HOM05D004191 ORTHO05D004887 1.9e-14 83.6 41 92.7
Medtr4g027400 Medicago truncatula HOM05D004191 ORTHO05D004887 6.2e-13 78.6 47 80.9
Rhsim01G0090000 Rhododendron simsii HOM05D004191 ORTHO05D004887 1.4e-12 77.4 69 63.8
Ah.07g199550 Amaranthus hybridus HOM05D004191 ORTHO05D004887 4.0e-12 75.9 41 82.9
Ah.12g056770 Amaranthus hybridus HOM05D004191 ORTHO05D004887 4.0e-12 75.9 68 55.9
Ah.07g199480 Amaranthus hybridus HOM05D004191 ORTHO05D060174 3.4e-11 72.8 39 79.5


User provided reference genes

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