Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN11G1247 Fragaria x ananassa HOM05D005351 ORTHO05D006542 0.0e+00 1661.7 895 100.0
FAN16G2746 Fragaria x ananassa HOM05D005351 ORTHO05D006542 0.0e+00 1640.9 895 99.1
FAN21G2745 Fragaria x ananassa HOM05D005351 ORTHO05D006542 0.0e+00 1587.8 895 96.1
FAN25G1298 Fragaria x ananassa HOM05D005351 ORTHO05D006542 0.0e+00 1580.8 895 96.0
FvH4_3g42241 Fragaria vesca HOM05D005351 ORTHO05D006542 0.0e+00 1477.6 828 97.1
RcHm_v2.0_Chr5g0075571 Rosa chinensis HOM05D005351 ORTHO05D006542 0.0e+00 1228.8 850 80.7
MD11G1037100 Malus domestica HOM05D005351 ORTHO05D006542 1.6e-262 909.8 952 59.5
Prupe.6G028400 Prunus persica HOM05D005351 ORTHO05D006542 3.5e-257 892.1 891 60.4
MD03G1035400 Malus domestica HOM05D005351 ORTHO05D006542 1.9e-242 843.2 888 58.3
Haze_09867 Corylus avellana HOM05D005351 ORTHO05D006542 5.3e-221 771.9 978 52.2
Cfa021891 Carpinus fangiana HOM05D005351 ORTHO05D006542 2.1e-217 760.0 979 51.5
QL08p002685 Quercus lobata HOM05D005351 ORTHO05D006542 1.4e-178 630.9 933 49.9
TAR626G0279 Trochodendron aralioides HOM05D005351 ORTHO05D006542 6.1e-177 625.5 1018 45.5
Sabra16G0244200 Salix brachista HOM05D005351 ORTHO05D006542 6.7e-176 622.1 999 44.9
Duzib213G0009 Durio zibethinus HOM05D005351 ORTHO05D006542 3.9e-168 596.3 981 44.5
VMungo0540G1402 Vigna mungo HOM05D005351 ORTHO05D006542 2.4e-165 587.0 974 43.6
CSS0045517 Camellia sinensis var. sinensis HOM05D005351 ORTHO05D006542 9.1e-165 585.1 1010 43.6
Ca_12455_v3 Cicer arietinum L. HOM05D005351 ORTHO05D006542 9.1e-165 585.1 961 44.4
CSS0029070 Camellia sinensis var. sinensis HOM05D005351 ORTHO05D006542 1.0e-163 581.6 1010 43.5
Lj6g0009098 Lotus japonicus HOM05D005351 ORTHO05D006542 4.7e-161 572.8 968 44.3
CiPaw.12G140700 Carya illinoinensis HOM05D005351 ORTHO05D006542 3.4e-159 566.6 783 50.4
Lalb_Chr15g0082311 Lupinus albus HOM05D005351 ORTHO05D006542 4.4e-159 566.2 972 44.7
Dinv40885 Davidia involucrata HOM05D005351 ORTHO05D006542 9.8e-159 565.1 964 45.0
Phvul.006G059260 Phaseolus vulgaris HOM05D005351 ORTHO05D006542 2.8e-158 563.5 989 42.3
GSVIVG01014743001 Vitis vinifera HOM05D005351 ORTHO05D006542 9.1e-157 558.5 931 42.1
Gohir.D05G384000 Gossypium hirsutum HOM05D005351 ORTHO05D006542 5.0e-155 552.7 973 43.6
Medtr3g461030 Medicago truncatula HOM05D005351 ORTHO05D006542 1.9e-154 550.8 974 43.2
Gorai.009G450800 Gossypium raimondii HOM05D005351 ORTHO05D006542 3.2e-154 550.1 973 43.4
TWI38G2212 Tripterygium wilfordii HOM05D005351 ORTHO05D006542 7.2e-154 548.9 1004 41.9
Gohir.A04G005700 Gossypium hirsutum HOM05D005351 ORTHO05D006542 9.4e-154 548.5 973 43.0
Nn1g02046 Nelumbo nucifera HOM05D005351 ORTHO05D006542 2.7e-153 547.0 1030 40.9
TWI38G1324 Tripterygium wilfordii HOM05D005351 ORTHO05D006542 8.0e-153 545.4 992 43.9
TPR.G17956 Trifolium pratense HOM05D005351 ORTHO05D006542 2.6e-151 540.4 970 42.8
Manes.01G003500 Manihot esculenta HOM05D005351 ORTHO05D006542 5.7e-151 539.3 979 41.7
Thecc.07G007900 Theobroma cacao HOM05D005351 ORTHO05D006542 7.5e-151 538.9 989 42.7
Psat5g166400 Pisum sativum HOM05D005351 ORTHO05D006542 5.9e-148 529.3 996 42.3
CsaV3_7G023840 Cucumis sativus L. HOM05D005351 ORTHO05D006542 7.2e-146 522.3 969 42.2
Potri.001G371600 Populus trichocarpa HOM05D005351 ORTHO05D006542 3.6e-145 520.0 856 44.0
Actinidia03651 Actinidia chinensis HOM05D005351 ORTHO05D006542 2.3e-144 517.3 956 42.8
Dinv10362 Davidia involucrata HOM05D005351 ORTHO05D006542 1.2e-143 515.0 842 46.4
Sed0019267 Sechium edule HOM05D005351 ORTHO05D006542 5.9e-140 502.7 951 42.7
Lj8A180G96 Lonicera japonica HOM05D005351 ORTHO05D006542 5.6e-138 496.1 977 41.8
Nitab4.5_0005478g0030 Nicotiana tabacum HOM05D005351 ORTHO05D006542 5.6e-138 496.1 972 39.8
Cpa.g.sc12.108 Carica papaya HOM05D005351 ORTHO05D006542 4.7e-137 493.0 950 40.7
PGR083G0334 Punica granatum HOM05D005351 ORTHO05D006542 8.0e-137 492.3 966 41.9
Nitab4.5_0003328g0090 Nicotiana tabacum HOM05D005351 ORTHO05D006542 8.9e-136 488.8 972 40.0
Cc05_g15290 Coffea canephora HOM05D005351 ORTHO05D006542 6.4e-134 482.6 989 39.8
Glyma.08G332700 Glycine max HOM05D005351 ORTHO05D006542 2.4e-133 480.7 870 42.2
vmacro09623 Vaccinium macrocarpon HOM05D005351 ORTHO05D006542 3.9e-131 473.4 956 42.7
PGSC0003DMG400014404 Solanum tuberosum HOM05D005351 ORTHO05D006542 6.6e-131 472.6 969 40.1
COL.COLO4_07741 Corchorus olitorius HOM05D005351 ORTHO05D006542 1.9e-130 471.1 971 39.4
Ciclev10007493m.g Citrus clementina HOM05D005351 ORTHO05D006542 3.6e-129 466.8 823 43.7
Glyma.18G074300 Glycine max HOM05D005351 ORTHO05D006542 1.4e-128 464.9 878 41.6
Rhsim04G0010500 Rhododendron simsii HOM05D005351 ORTHO05D006542 1.2e-127 461.8 1100 38.9
arahy.Tifrunner.gnm1.ann1.1R5J8M Arachis hypogaea HOM05D005351 ORTHO05D006542 1.1e-125 455.3 948 41.6
SalBow8G3039 Salvia bowleyana HOM05D005351 ORTHO05D006542 1.4e-125 454.9 947 39.1
CAN.G492.50 Capsicum annuum HOM05D005351 ORTHO05D006542 2.4e-125 454.1 979 39.5
Oeu049420.1 Olea europaea HOM05D005351 ORTHO05D006542 3.5e-124 450.3 981 38.9
Migut.M01635 Erythranthe guttata HOM05D005351 ORTHO05D006542 7.8e-124 449.1 947 40.3
CANSAT11G0508 Cannabis sativa HOM05D005351 ORTHO05D006542 2.3e-123 447.6 871 41.0
Nn3g19476 Nelumbo nucifera HOM05D005351 ORTHO05D006542 5.1e-123 446.4 964 38.0
PSO210G4843 Papaver somniferum HOM05D005351 ORTHO05D006542 5.1e-123 446.4 964 39.9
Hund23091 Selenicereus undatus HOM05D005351 ORTHO05D006542 2.1e-121 441.0 992 37.6
DCAR_013254 Daucus carota HOM05D005351 ORTHO05D006542 8.1e-121 439.1 966 39.6
PSO210G4950 Papaver somniferum HOM05D005351 ORTHO05D006542 8.9e-120 435.6 971 39.2
MSTRG.15808 Avicennia marina HOM05D005351 ORTHO05D006542 1.5e-119 434.9 970 39.9
AT3G13225 Arabidopsis thaliana HOM05D005351 ORTHO05D006542 2.6e-119 434.1 956 39.5
HanXRQChr11g0334131 Helianthus annuus HOM05D005351 ORTHO05D006542 1.1e-117 428.7 933 38.6
THA.LOC104815687 Tarenaya hassleriana HOM05D005351 ORTHO05D006542 3.5e-116 423.7 975 37.2
arahy.Tifrunner.gnm1.ann1.LDHF9L Arachis hypogaea HOM05D005351 ORTHO05D006542 1.2e-113 415.2 948 40.0
ClCG09G021540 Citrullus lanatus HOM05D005351 ORTHO05D006542 2.1e-113 414.5 1007 35.9
ECA236G3149 Erigeron canadensis HOM05D005351 ORTHO05D006542 8.1e-113 412.5 948 39.5
SGA_v2.0_scaffold168G38576 Striga asiatica HOM05D005351 ORTHO05D006542 3.1e-112 410.6 812 38.9
AUR62017130 Chenopodium quinoa HOM05D005351 ORTHO05D006542 8.9e-112 409.1 1019 37.4
Carub.0003s1261 Capsella rubella HOM05D005351 ORTHO05D006542 1.5e-111 408.3 970 38.1
Eucgr.F02026 Eucalyptus grandis HOM05D005351 ORTHO05D006542 3.8e-110 403.7 811 40.8
AUR62035679 Chenopodium quinoa HOM05D005351 ORTHO05D006542 2.7e-108 397.5 1010 37.4
MBI14_g37362_MAGBIO Magnolia biondii HOM05D005351 ORTHO05D006542 4.6e-108 396.7 963 36.4
Hma1.2p1_0193F.1_g083920 Hydrangea macrophylla HOM05D005351 ORTHO05D006542 6.6e-107 392.9 1049 36.9
Sp3g11430 Schrenkiella parvula HOM05D005351 ORTHO05D006542 8.7e-107 392.5 963 37.6
Aqoxy1G04296 Aquilegia oxysepala HOM05D005351 ORTHO05D006542 1.5e-106 391.7 1005 36.3
MELO3C024969.2 Cucumis melo HOM05D005351 ORTHO05D006542 4.3e-106 390.2 864 39.0
Sopen10g001810 Solanum pennellii HOM05D005351 ORTHO05D006542 5.8e-103 379.8 902 37.0
ATR0751G017 Amborella trichopoda HOM05D005351 ORTHO05D006542 1.7e-102 378.3 1048 35.3
Atru.chr2.3836 Acer truncatum HOM05D005351 ORTHO05D006542 2.4e-101 374.4 750 42.3
Solyc10g005850.4 Solanum lycopersicum HOM05D005351 ORTHO05D006542 2.4e-101 374.4 902 36.9
Aa31LG8G460 Aethionema arabicum HOM05D005351 ORTHO05D006542 5.4e-101 373.2 984 36.1
EL10Ac4g07541 Beta vulgaris HOM05D005351 ORTHO05D006542 9.3e-101 372.5 1046 36.2
BcaC09g48295 Brassica carinata HOM05D005351 ORTHO05D006542 6.0e-100 369.8 960 37.4
BcaB04g21006 Brassica carinata HOM05D005351 ORTHO05D006542 3.9e-99 367.1 962 36.5
BolC1t05130H Brassica oleracea HOM05D005351 ORTHO05D006542 9.6e-98 362.5 967 37.1
BraA01t04066Z Brassica rapa HOM05D005351 ORTHO05D006542 2.8e-97 360.9 1006 36.8
Ah.06g181500 Amaranthus hybridus HOM05D005351 ORTHO05D006542 4.8e-97 360.1 1020 34.6
Peaxi162Scf00018g00155 Petunia axillaris HOM05D005351 ORTHO05D006542 1.5e-90 338.6 871 35.8
Os06g0298400 Oryza sativa ssp. japonica HOM05D005351 ORTHO05D006542 3.7e-89 334.0 919 35.0
A01p40300 Brassica napus HOM05D005351 ORTHO05D006542 8.1e-89 332.8 927 36.5
unitig_0.g707 Utricularia gibba HOM05D005351 ORTHO05D006542 5.3e-88 330.1 930 33.8
C01p51820 Brassica napus HOM05D005351 ORTHO05D006542 2.6e-87 327.8 926 36.1
Sc03g0011530 Simmondsia chinensis HOM05D005351 ORTHO05D006542 7.6e-87 326.2 613 43.9
CDE05G2589 Ceratophyllum demersum HOM05D005351 ORTHO05D006542 3.8e-86 323.9 961 34.2
CARHR087840 Cardamine hirsuta HOM05D005351 ORTHO05D006542 1.1e-85 322.4 773 35.8
Thhalv10020110m.g Eutrema salsugineum HOM05D005351 ORTHO05D006542 1.9e-85 321.6 858 36.1
AL3G25030 Arabidopsis lyrata HOM05D005351 ORTHO05D006542 1.2e-84 318.9 771 36.1
Zm00001eb381020 Zea mays HOM05D005351 ORTHO05D006542 1.3e-81 308.9 926 35.1
SEGI_31992 Sequoiadendron giganteum HOM05D005351 ORTHO05D006542 3.7e-81 307.4 1089 32.3
Lsat_1_v5_gn_7_114900 Lactuca sativa HOM05D005351 ORTHO05D006542 3.2e-77 294.3 999 32.6
HPP92_017874 Vanilla planifolia HOM05D005351 ORTHO05D006542 4.2e-77 293.9 940 33.2
Zm00001eb281160 Zea mays HOM05D005351 ORTHO05D006542 5.0e-70 270.4 916 34.8
CDE05G0998 Ceratophyllum demersum HOM05D005351 ORTHO05D006542 8.2e-57 226.5 909 30.6
PSO782G2183 Papaver somniferum HOM05D005351 ORTHO05D006542 4.8e-49 200.7 155 69.0
Actinidia00844 Actinidia chinensis HOM05D005351 ORTHO05D006542 5.0e-46 190.7 809 28.7
CSS0030315 Camellia sinensis var. sinensis HOM05D005351 ORTHO05D006542 9.4e-45 186.4 431 33.2
CSS0028997 Camellia sinensis var. sinensis HOM05D005351 ORTHO05D006542 3.0e-43 181.4 423 32.9
Oeu017994.1 Olea europaea HOM05D005351 ORTHO05D006542 4.1e-40 171.0 259 44.0
MBI14_g27041_MAGBIO Magnolia biondii HOM05D005351 ORTHO05D006542 5.4e-40 170.6 136 66.9
CBR_g12012 Chara braunii HOM05D005351 ORTHO05D006542 4.3e-29 134.4 349 34.4
AagrBONN_evm.TU.Sc2ySwM_368.1722__1723 Anthoceros agrestis HOM05D005351 ORTHO05D006542 8.0e-28 130.2 1087 24.5
Hma1.2p1_3473F.1_g336240 Hydrangea macrophylla HOM05D005351 ORTHO05D006542 3.4e-26 124.8 300 41.7
PSO782G1978 Papaver somniferum HOM05D005351 ORTHO05D006542 1.4e-24 119.4 458 33.4
SMO164G0196 Selaginella moellendorffii HOM05D005351 ORTHO05D006542 3.2e-24 118.2 156 46.2
vmacro11082 Vaccinium macrocarpon HOM05D000009 ORTHO05D006542 3.9e-22 111.3 97 61.9
Hma1.2p1_3473F.1_g336230 Hydrangea macrophylla HOM05D005351 ORTHO05D006542 1.9e-21 109.0 104 63.5
HPP92_028497 Vanilla planifolia HOM05D005351 ORTHO05D006542 1.9e-21 109.0 184 41.8
Dinv10361 Davidia involucrata HOM05D005351 ORTHO05D006542 3.6e-20 104.8 73 65.8
Pp3c7_8580 Physcomitrium patens HOM05D005351 ORTHO05D006542 6.4e-17 94.0 1011 24.7
Lsat_1_v5_gn_6_88041 Lactuca sativa HOM05D005351 ORTHO05D006542 8.3e-17 93.6 251 34.3
AagrBONN_evm.TU.Sc2ySwM_368.1723 Anthoceros agrestis HOM05D005351 ORTHO05D006542 4.1e-16 91.3 102 56.9
CiPaw.12G140800 Carya illinoinensis HOM05D005351 ORTHO05D006542 1.0e-14 86.7 148 43.9
Cre09.g388430 Chlamydomonas reinhardtii HOM05D005351 ORTHO05D006542 3.1e-11 75.1 188 31.9
Peaxi162Scf00018g00154 Petunia axillaris HOM05D005351 ORTHO05D006542 1.5e-10 72.8 62 71.0
Solyc10g005860.3 Solanum lycopersicum HOM05D005351 ORTHO05D006542 9.8e-10 70.1 62 67.7
Cc00_g23250 Coffea canephora HOM05D000874 ORTHO05D001049 1.6e-07 62.8 43 55.8
RcHm_v2.0_Chr5g0075561 Rosa chinensis HOM05D005351 ORTHO05D006542 1.6e-07 62.8 32 96.9
Oeu017995.1 Olea europaea HOM05D005351 ORTHO05D006542 2.7e-07 62.0 613 23.7


User provided reference genes

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