Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN11G1123 Fragaria x ananassa HOM05D005867 ORTHO05D007273 4.2e-127 458.0 225 100.0
FvH4_3g43090 Fragaria vesca HOM05D005867 ORTHO05D007273 1.5e-103 379.8 186 100.0
FAN25G0812 Fragaria x ananassa HOM05D005867 ORTHO05D007273 9.5e-103 377.1 186 98.9
FAN21G2433 Fragaria x ananassa HOM05D005867 ORTHO05D007273 2.3e-101 372.5 186 97.3
FAN16G1279 Fragaria x ananassa HOM05D005867 ORTHO05D007273 1.5e-100 369.8 186 97.8
RcHm_v2.0_Chr5g0077191 Rosa chinensis HOM05D005867 ORTHO05D007273 1.1e-98 363.6 186 95.7
Prupe.6G023200 Prunus persica HOM05D005867 ORTHO05D007273 1.9e-95 352.8 184 90.8
MD03G1024000 Malus domestica HOM05D005867 ORTHO05D007273 8.0e-94 347.4 184 89.7
MD11G1028900 Malus domestica HOM05D005867 ORTHO05D007273 5.2e-93 344.7 184 88.6
Cfa009733 Carpinus fangiana HOM05D005867 ORTHO05D007273 3.7e-91 338.6 184 87.5
Potri.001G018500 Populus trichocarpa HOM05D005867 ORTHO05D007273 1.9e-90 336.3 184 84.2
Actinidia16309 Actinidia chinensis HOM05D005867 ORTHO05D007273 4.1e-90 335.1 185 83.2
Sabra01G0013100 Salix brachista HOM05D005867 ORTHO05D007273 7.0e-90 334.3 184 83.7
CAN.G575.64 Capsicum annuum HOM05D005867 ORTHO05D007273 9.2e-90 334.0 186 84.4
CANSAT54G1708 Cannabis sativa HOM05D005867 ORTHO05D007273 2.0e-89 332.8 184 84.2
PGSC0003DMG400023838 Solanum tuberosum HOM05D005867 ORTHO05D007273 3.5e-89 332.0 186 83.3
Sopen12g034670 Solanum pennellii HOM05D005867 ORTHO05D007273 4.6e-89 331.6 186 83.3
Oeu035742.1 Olea europaea HOM05D005867 ORTHO05D007273 6.0e-89 331.3 184 82.1
SGA_v2.0_scaffold8G04610 Striga asiatica HOM05D005867 ORTHO05D007273 6.0e-89 331.3 186 82.3
Ciclev10016610m.g Citrus clementina HOM05D005867 ORTHO05D007273 1.0e-88 330.5 190 80.0
Gorai.009G072300 Gossypium raimondii HOM05D005867 ORTHO05D007273 1.3e-88 330.1 184 83.7
Nitab4.5_0001925g0100 Nicotiana tabacum HOM05D005867 ORTHO05D007273 1.3e-88 330.1 187 82.9
Solyc12g100050.2 Solanum lycopersicum HOM05D005867 ORTHO05D007273 1.3e-88 330.1 186 82.8
Haze_23087 Corylus avellana HOM05D005867 ORTHO05D007273 1.7e-88 329.7 179 86.6
QL01p005337 Quercus lobata HOM05D005867 ORTHO05D007273 1.7e-88 329.7 184 84.2
ClCG03G013300 Citrullus lanatus HOM05D005867 ORTHO05D007273 2.3e-88 329.3 184 83.7
ECA238G1591 Erigeron canadensis HOM05D005867 ORTHO05D007273 2.3e-88 329.3 188 83.5
HanXRQChr14g0453051 Helianthus annuus HOM05D005867 ORTHO05D007273 2.3e-88 329.3 188 83.0
Ah.04g161870 Amaranthus hybridus HOM05D005867 ORTHO05D007273 3.9e-88 328.6 185 81.6
Cc01_g01980 Coffea canephora HOM05D005867 ORTHO05D007273 3.9e-88 328.6 184 83.2
Lsat_1_v5_gn_2_100781 Lactuca sativa HOM05D005867 ORTHO05D007273 3.9e-88 328.6 192 81.2
CSS0048722 Camellia sinensis var. sinensis HOM05D005867 ORTHO05D007273 5.0e-88 328.2 182 84.1
Gohir.A05G068300 Gossypium hirsutum HOM05D005867 ORTHO05D007273 5.0e-88 328.2 184 82.6
Ah.06g193630 Amaranthus hybridus HOM05D005867 ORTHO05D007273 8.6e-88 327.4 184 82.1
MSTRG.21396 Avicennia marina HOM05D005867 ORTHO05D007273 8.6e-88 327.4 186 81.2
Cpa.g.sc84.80 Carica papaya HOM05D005867 ORTHO05D007273 8.6e-88 327.4 183 83.1
Nitab4.5_0008647g0010 Nicotiana tabacum HOM05D005867 ORTHO05D007273 8.6e-88 327.4 187 81.8
Sed0004394 Sechium edule HOM05D005867 ORTHO05D007273 1.1e-87 327.0 184 82.6
Gohir.D05G071300 Gossypium hirsutum HOM05D005867 ORTHO05D007273 1.5e-87 326.6 184 82.6
Peaxi162Scf00029g00326 Petunia axillaris HOM05D005867 ORTHO05D007273 1.5e-87 326.6 185 82.2
MELO3C015200.2 Cucumis melo HOM05D005867 ORTHO05D007273 1.9e-87 326.2 184 83.2
CsaV3_1G042730 Cucumis sativus L. HOM05D005867 ORTHO05D007273 2.5e-87 325.9 184 83.2
Duzib168G0296 Durio zibethinus HOM05D005867 ORTHO05D007273 2.5e-87 325.9 184 82.1
Thecc.09G227900 Theobroma cacao HOM05D005867 ORTHO05D007273 2.5e-87 325.9 184 81.5
COL.COLO4_24845 Corchorus olitorius HOM05D005867 ORTHO05D007273 3.3e-87 325.5 184 80.4
Rhsim13G0224100 Rhododendron simsii HOM05D005867 ORTHO05D007273 3.3e-87 325.5 184 81.5
CiPaw.13G163600 Carya illinoinensis HOM05D005867 ORTHO05D007273 4.3e-87 325.1 184 82.6
SalBow4G1382 Salvia bowleyana HOM05D005867 ORTHO05D007273 4.3e-87 325.1 186 82.3
EL10Ac4g10299 Beta vulgaris HOM05D005867 ORTHO05D007273 5.6e-87 324.7 185 80.5
TAR636G0304 Trochodendron aralioides HOM05D005867 ORTHO05D007273 5.6e-87 324.7 184 82.1
Dinv36283 Davidia involucrata HOM05D005867 ORTHO05D007273 7.3e-87 324.3 185 81.6
HanXRQChr02g0036871 Helianthus annuus HOM05D005867 ORTHO05D007273 1.2e-86 323.6 188 81.4
Nitab4.5_0002766g0030 Nicotiana tabacum HOM05D005867 ORTHO05D007273 1.2e-86 323.6 186 80.6
SalBow4G0034 Salvia bowleyana HOM05D005867 ORTHO05D007273 1.2e-86 323.6 186 81.7
THA.LOC104804975 Tarenaya hassleriana HOM05D005867 ORTHO05D007273 2.8e-86 322.4 184 82.1
TAR633G2552 Trochodendron aralioides HOM05D005867 ORTHO05D007273 2.8e-86 322.4 184 81.0
Eucgr.J00791 Eucalyptus grandis HOM05D005867 ORTHO05D007273 3.6e-86 322.0 184 80.4
PGR119G1510 Punica granatum HOM05D005867 ORTHO05D007273 3.6e-86 322.0 184 80.4
VMungo1080G0295 Vigna mungo HOM05D005867 ORTHO05D007273 3.6e-86 322.0 184 81.0
AUR62000096 Chenopodium quinoa HOM05D005867 ORTHO05D007273 6.2e-86 321.2 184 79.9
AUR62019269 Chenopodium quinoa HOM05D005867 ORTHO05D007273 6.2e-86 321.2 184 79.9
DCAR_002056 Daucus carota HOM05D005867 ORTHO05D007273 6.2e-86 321.2 183 80.3
GSVIVG01025306001 Vitis vinifera HOM05D005867 ORTHO05D007273 8.1e-86 320.9 184 81.0
Nitab4.5_0008868g0020 Nicotiana tabacum HOM05D005867 ORTHO05D007273 1.1e-85 320.5 186 80.6
Atru.chr3.2589 Acer truncatum HOM05D005867 ORTHO05D007273 1.4e-85 320.1 184 79.9
Oeu052048.1 Olea europaea HOM05D005867 ORTHO05D007273 1.8e-85 319.7 183 79.8
MSTRG.17581 Avicennia marina HOM05D005867 ORTHO05D007273 4.0e-85 318.5 186 79.6
Manes.06G166900 Manihot esculenta HOM05D005867 ORTHO05D007273 4.0e-85 318.5 184 79.9
Phvul.L010243 Phaseolus vulgaris HOM05D005867 ORTHO05D007273 4.0e-85 318.5 184 80.4
TWI60G1455 Tripterygium wilfordii HOM05D005867 ORTHO05D007273 6.8e-85 317.8 183 80.3
SHI29727 Sapria himalayana HOM05D005867 ORTHO05D007273 1.2e-84 317.0 184 78.8
Sc06g0004490 Simmondsia chinensis HOM05D005867 ORTHO05D007273 1.2e-84 317.0 184 82.1
Glyma.15G033100 Glycine max HOM05D005867 ORTHO05D007273 1.5e-84 316.6 184 80.4
Dinv08036 Davidia involucrata HOM05D005867 ORTHO05D007273 2.6e-84 315.8 179 81.6
TWI34G0922 Tripterygium wilfordii HOM05D005867 ORTHO05D007273 2.6e-84 315.8 172 84.9
PGSC0003DMG400013588 Solanum tuberosum HOM05D005867 ORTHO05D007273 3.4e-84 315.5 186 77.4
Aa31LG3G14590 Aethionema arabicum HOM05D005867 ORTHO05D007273 4.4e-84 315.1 180 82.2
Solyc11g061760.3 Solanum lycopersicum HOM05D005867 ORTHO05D007273 4.4e-84 315.1 182 78.6
Sopen11g023660 Solanum pennellii HOM05D005867 ORTHO05D007273 4.4e-84 315.1 182 78.6
Migut.D00576 Erythranthe guttata HOM05D005867 ORTHO05D007273 1.3e-83 313.5 182 78.6
AT5G13070 Arabidopsis thaliana HOM05D005867 ORTHO05D007273 1.7e-83 313.2 180 80.6
BraA10t44575Z Brassica rapa HOM05D005867 ORTHO05D007273 1.7e-83 313.2 180 81.1
Sp6g30910 Schrenkiella parvula HOM05D005867 ORTHO05D007273 2.2e-83 312.8 180 80.6
BcaC04g19155 Brassica carinata HOM05D002203 ORTHO05D007273 2.9e-83 312.4 181 79.6
Carub.0006s1124 Capsella rubella HOM05D005867 ORTHO05D007273 2.9e-83 312.4 180 80.0
Thhalv10014788m.g Eutrema salsugineum HOM05D005867 ORTHO05D007273 2.9e-83 312.4 180 80.0
Nn2g15416 Nelumbo nucifera HOM05D005867 ORTHO05D007273 2.9e-83 312.4 184 78.8
AL6G23670 Arabidopsis lyrata HOM05D005867 ORTHO05D007273 3.7e-83 312.0 180 80.0
A10p25130 Brassica napus HOM05D005867 ORTHO05D007273 1.4e-82 310.1 180 80.0
A02p01670 Brassica napus HOM05D005867 ORTHO05D007273 1.9e-82 309.7 180 78.9
C09p64030 Brassica napus HOM05D005867 ORTHO05D007273 1.9e-82 309.7 181 79.0
BolC2t06533H Brassica oleracea HOM05D005867 ORTHO05D007273 1.9e-82 309.7 180 78.9
BraA02t05146Z Brassica rapa HOM05D005867 ORTHO05D007273 1.9e-82 309.7 180 78.9
Migut.N02304 Erythranthe guttata HOM05D005867 ORTHO05D007273 1.9e-82 309.7 184 77.7
BolC9t59241H Brassica oleracea HOM05D005867 ORTHO05D007273 3.2e-82 308.9 180 79.4
BcaNung01858 Brassica carinata HOM05D005867 ORTHO05D007273 4.1e-82 308.5 180 78.3
C02p05880 Brassica napus HOM05D005867 ORTHO05D007273 5.4e-82 308.1 180 78.3
CARHR200400 Cardamine hirsuta HOM05D005867 ORTHO05D007273 5.4e-82 308.1 180 79.4
BcaNung01174 Brassica carinata HOM05D005867 ORTHO05D007273 1.2e-81 307.0 180 78.3
unitig_21.g20645 Utricularia gibba HOM05D005867 ORTHO05D007273 1.6e-81 306.6 186 73.1
Lalb_Chr14g0372181 Lupinus albus HOM05D005867 ORTHO05D007273 4.6e-81 305.1 184 79.3
Aqoxy1G00241 Aquilegia oxysepala HOM05D005867 ORTHO05D007273 3.3e-79 298.9 184 74.5
arahy.Tifrunner.gnm1.ann1.V9D8IR Arachis hypogaea HOM05D005867 ORTHO05D007273 4.3e-79 298.5 184 77.7
arahy.Tifrunner.gnm1.ann1.2D2P15 Arachis hypogaea HOM05D005867 ORTHO05D007273 5.6e-79 298.1 189 75.1
Duzib150G0087 Durio zibethinus HOM05D005867 ORTHO05D007273 4.7e-78 295.0 187 76.5
Cfa009734 Carpinus fangiana HOM05D005867 ORTHO05D007273 8.9e-77 290.8 181 75.1
Ca_01285_v3 Cicer arietinum L. HOM05D005867 ORTHO05D007273 2.0e-76 289.7 184 75.5
PSO384G4422 Papaver somniferum HOM05D005867 ORTHO05D007273 4.4e-76 288.5 185 74.6
Lj3g0003495 Lotus japonicus HOM05D005867 ORTHO05D007273 5.8e-76 288.1 184 75.0
TPR.G6870 Trifolium pratense HOM05D005867 ORTHO05D007273 9.9e-76 287.3 184 74.5
PSO339G4569 Papaver somniferum HOM05D005867 ORTHO05D007273 2.9e-75 285.8 185 74.1
Psat5g287440 Pisum sativum HOM05D005867 ORTHO05D007273 1.1e-74 283.9 186 73.7
Medtr1g058050 Medicago truncatula HOM05D005867 ORTHO05D007273 2.4e-74 282.7 186 72.0
QL01p005297 Quercus lobata HOM05D005867 ORTHO05D007273 5.4e-74 281.6 184 70.1
Medtr2g017985 Medicago truncatula HOM05D005867 ORTHO05D007273 7.1e-74 281.2 184 72.3
MBI17_g30524_MAGBIO Magnolia biondii HOM05D005867 ORTHO05D007273 2.1e-73 279.6 173 74.0
Medtr8g096810 Medicago truncatula HOM05D005867 ORTHO05D007273 2.1e-73 279.6 184 72.3
CiPaw.13G163500 Carya illinoinensis HOM05D005867 ORTHO05D007273 4.6e-73 278.5 180 72.8
Medtr2g098170 Medicago truncatula HOM05D005867 ORTHO05D007273 7.8e-73 277.7 184 71.7
ATR0605G298 Amborella trichopoda HOM05D005867 ORTHO05D007273 1.5e-63 246.9 180 63.3
Mapoly0061s0125 Marchantia polymorpha HOM05D005867 ORTHO05D007273 7.6e-60 234.6 183 54.1
SMO147G0033 Selaginella moellendorffii HOM05D005867 ORTHO05D007273 5.1e-56 221.9 180 55.6
Os02g0717900 Oryza sativa ssp. japonica HOM05D005867 ORTHO05D007273 1.1e-53 214.2 190 52.1
Pp3c14_26010 Physcomitrium patens HOM05D005867 ORTHO05D007273 1.4e-53 213.8 177 53.7
MBI01_g27622_MAGBIO Magnolia biondii HOM05D005867 ORTHO05D007273 1.8e-53 213.4 172 62.2
Pp3c1_37310 Physcomitrium patens HOM05D005867 ORTHO05D007273 7.6e-52 208.0 183 50.8
CBR_g20418 Chara braunii HOM05D005867 ORTHO05D007273 3.8e-51 205.7 181 51.4
HPP92_022794 Vanilla planifolia HOM05D005867 ORTHO05D007273 5.5e-42 175.3 151 55.6
Os09g0486000 Oryza sativa ssp. japonica HOM05D005867 ORTHO05D007273 4.6e-41 172.2 180 49.4
Lj2P647T17 Lonicera japonica HOM05D005867 ORTHO05D007273 6.9e-37 158.3 89 84.3
Zm00001eb316590 Zea mays HOM05D005867 ORTHO05D007273 9.3e-34 147.9 196 43.9
Zm00001eb189280 Zea mays HOM05D005867 ORTHO05D007273 3.6e-25 119.4 88 63.6
Mapoly0008s0230 Marchantia polymorpha HOM05D005867 ORTHO05D254737 1.1e-21 107.8 157 35.7
Actinidia28459 Actinidia chinensis HOM05D005867 ORTHO05D055216 2.6e-20 103.2 55 83.6
Cfa022043 Carpinus fangiana HOM05D002321 ORTHO05D006940 1.7e-06 57.4 88 33.0


User provided reference genes

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