Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN11G1098 Fragaria x ananassa HOM05D005352 ORTHO05D006371 1.4e-40 169.1 81 100.0
FvH4_3g19981 Fragaria vesca HOM05D005352 ORTHO05D006371 5.4e-40 167.2 81 98.8
FAN25G2626 Fragaria x ananassa HOM05D005352 ORTHO05D006371 7.7e-39 163.3 81 96.3
FAN16G1707 Fragaria x ananassa HOM05D005352 ORTHO05D006371 6.5e-38 160.2 81 95.1
RcHm_v2.0_Chr5g0033731 Rosa chinensis HOM05D005352 ORTHO05D006371 9.5e-37 156.4 81 91.4
MD03G1227400 Malus domestica HOM05D005352 ORTHO05D006371 2.7e-31 138.3 81 79.0
Prupe.4G181400 Prunus persica HOM05D005352 ORTHO05D006371 7.8e-31 136.7 82 78.0
MD03G1227600 Malus domestica HOM05D005352 ORTHO05D006371 1.0e-30 136.3 81 77.8
MD11G1246900 Malus domestica HOM05D005352 ORTHO05D006371 1.7e-30 135.6 81 77.8
FAN21G3346 Fragaria x ananassa HOM05D000257 ORTHO05D009129 2.3e-30 135.2 84 79.8
Ciclev10010072m.g Citrus clementina HOM05D005352 ORTHO05D006371 1.5e-29 132.5 81 72.8
Duzib268G0922 Durio zibethinus HOM05D005352 ORTHO05D006371 1.9e-29 132.1 81 75.3
TAR629G2863 Trochodendron aralioides HOM05D000001 ORTHO05D000424 1.9e-29 132.1 79 77.2
TAR629G0728 Trochodendron aralioides HOM05D005352 ORTHO05D006371 5.6e-29 130.6 79 75.9
Cpa.g.sc80.62 Carica papaya HOM05D005352 ORTHO05D006371 9.5e-29 129.8 81 72.8
Manes.03G110400 Manihot esculenta HOM05D005352 ORTHO05D006371 9.5e-29 129.8 81 71.6
Eucgr.F03316 Eucalyptus grandis HOM05D005352 ORTHO05D006371 2.1e-28 128.6 81 75.3
Haze_09426 Corylus avellana HOM05D002732 ORTHO05D002955 2.8e-28 128.3 80 75.0
Actinidia35250 Actinidia chinensis HOM05D005352 ORTHO05D006371 3.6e-28 127.9 81 70.4
Gohir.D11G297800 Gossypium hirsutum HOM05D005352 ORTHO05D006371 3.6e-28 127.9 81 72.8
Gorai.007G322700 Gossypium raimondii HOM05D005352 ORTHO05D006371 3.6e-28 127.9 81 72.8
Cfa020587 Carpinus fangiana HOM05D005352 ORTHO05D006371 1.0e-27 126.3 81 74.1
MELO3C016512.2 Cucumis melo HOM05D005352 ORTHO05D006371 1.0e-27 126.3 81 71.6
CSS0040687 Camellia sinensis var. sinensis HOM05D005352 ORTHO05D006371 1.4e-27 125.9 81 72.8
CsaV3_3G006320 Cucumis sativus L. HOM05D005352 ORTHO05D006371 1.4e-27 125.9 81 71.6
ClCG10G006950 Citrullus lanatus HOM05D005352 ORTHO05D006371 3.0e-27 124.8 82 73.2
Thecc.07G089400 Theobroma cacao HOM05D005352 ORTHO05D006371 4.0e-27 124.4 81 75.3
Gohir.A04G030400 Gossypium hirsutum HOM05D005352 ORTHO05D006371 8.9e-27 123.2 81 70.4
Gohir.A11G284900 Gossypium hirsutum HOM05D005352 ORTHO05D006371 1.2e-26 122.9 81 71.6
Hma1.2p1_0898F.1_g234370 Hydrangea macrophylla HOM05D005352 ORTHO05D006371 1.2e-26 122.9 81 71.6
Dinv04306 Davidia involucrata HOM05D005352 ORTHO05D006371 1.5e-26 122.5 81 70.4
Hma1.2p1_0885F.1_g232590 Hydrangea macrophylla HOM05D005352 ORTHO05D006371 1.5e-26 122.5 81 67.9
Phvul.004G175600 Phaseolus vulgaris HOM05D005352 ORTHO05D006371 2.0e-26 122.1 81 66.7
Manes.15G086800 Manihot esculenta HOM05D005352 ORTHO05D006371 2.6e-26 121.7 81 67.9
Gorai.009G388100 Gossypium raimondii HOM05D005352 ORTHO05D006371 5.7e-26 120.6 81 69.1
Nitab4.5_0000207g0090 Nicotiana tabacum HOM05D005352 ORTHO05D006371 9.8e-26 119.8 81 70.4
PGR031G2765 Punica granatum HOM05D005352 ORTHO05D006371 9.8e-26 119.8 83 69.9
Ca_24271_v3 Cicer arietinum L. HOM05D005352 ORTHO05D006371 1.3e-25 119.4 81 64.2
QL08p021806 Quercus lobata HOM05D005352 ORTHO05D006371 1.7e-25 119.0 80 72.5
DCAR_013105 Daucus carota HOM05D005352 ORTHO05D006371 2.9e-25 118.2 81 66.7
Gohir.D05G355700 Gossypium hirsutum HOM05D005352 ORTHO05D006371 2.9e-25 118.2 81 67.9
Lalb_Chr25g0286381 Lupinus albus HOM05D005352 ORTHO05D006371 2.9e-25 118.2 81 66.7
Nitab4.5_0002383g0040 Nicotiana tabacum HOM05D005352 ORTHO05D006371 2.9e-25 118.2 81 69.1
Lj3g0008482 Lotus japonicus HOM05D005352 ORTHO05D006371 6.4e-25 117.1 81 67.9
HanXRQChr12g0364261 Helianthus annuus HOM05D005352 ORTHO05D006371 8.3e-25 116.7 81 69.1
Nitab4.5_0001336g0010 Nicotiana tabacum HOM05D005352 ORTHO05D006371 8.3e-25 116.7 81 65.4
CiPaw.11G169400 Carya illinoinensis HOM05D005352 ORTHO05D006371 1.8e-24 115.5 81 67.9
Dinv20171 Davidia involucrata HOM05D005352 ORTHO05D006371 1.8e-24 115.5 81 67.9
Rhsim01G0293100 Rhododendron simsii HOM05D005352 ORTHO05D006371 1.8e-24 115.5 81 66.7
Rhsim06G0198800 Rhododendron simsii HOM05D005352 ORTHO05D006371 1.8e-24 115.5 81 67.9
vmacro09532 Vaccinium macrocarpon HOM05D005352 ORTHO05D006371 1.8e-24 115.5 79 68.4
Glyma.12G154400 Glycine max HOM05D005352 ORTHO05D006371 2.4e-24 115.2 81 61.7
Sc03g0009970 Simmondsia chinensis HOM05D005352 ORTHO05D006371 3.2e-24 114.8 81 69.1
Lalb_Chr01g0006571 Lupinus albus HOM05D005352 ORTHO05D006371 4.1e-24 114.4 81 63.0
Sabra16G0262400 Salix brachista HOM05D005352 ORTHO05D006371 4.1e-24 114.4 81 66.7
Sed0025683 Sechium edule HOM05D005352 ORTHO05D006371 4.1e-24 114.4 81 67.9
Glyma.06G242800 Glycine max HOM05D005352 ORTHO05D006371 5.4e-24 114.0 81 61.7
Potri.001G400000 Populus trichocarpa HOM05D005352 ORTHO05D006371 5.4e-24 114.0 81 66.7
Solyc10g007010.1 Solanum lycopersicum HOM05D005352 ORTHO05D006371 5.4e-24 114.0 81 65.4
Sopen10g002920 Solanum pennellii HOM05D005352 ORTHO05D006371 5.4e-24 114.0 81 65.4
Peaxi162Scf00027g00225 Petunia axillaris HOM05D005352 ORTHO05D006371 7.0e-24 113.6 81 64.2
PSO384G2174 Papaver somniferum HOM05D005352 ORTHO05D006371 1.6e-23 112.5 70 72.9
PGSC0003DMG400025038 Solanum tuberosum HOM05D005352 ORTHO05D006371 1.6e-23 112.5 81 63.0
Peaxi162Scf00069g01430 Petunia axillaris HOM05D005352 ORTHO05D006371 2.7e-23 111.7 79 67.1
EL10Ac4g08174 Beta vulgaris HOM05D005352 ORTHO05D006371 3.5e-23 111.3 79 65.8
CAN.G199.4 Capsicum annuum HOM05D005352 ORTHO05D006371 3.5e-23 111.3 81 63.0
Sabra11G0103700 Salix brachista HOM05D002732 ORTHO05D002955 4.6e-23 110.9 81 65.4
GSVIVG01014339001 Vitis vinifera HOM05D005352 ORTHO05D006371 5.9e-23 110.5 81 64.2
HanXRQChr13g0406971 Helianthus annuus HOM05D005352 ORTHO05D006371 7.8e-23 110.2 81 64.2
Sopen07g031350 Solanum pennellii HOM05D005352 ORTHO05D006371 7.8e-23 110.2 79 63.3
AUR62019420 Chenopodium quinoa HOM05D005352 ORTHO05D006371 1.0e-22 109.8 81 65.4
Lj5g0028047 Lotus japonicus HOM05D005352 ORTHO05D006371 1.0e-22 109.8 81 66.7
AUR62034294 Chenopodium quinoa HOM05D002732 ORTHO05D002955 1.3e-22 109.4 81 65.4
Cc05_g12050 Coffea canephora HOM05D005352 ORTHO05D006371 1.7e-22 109.0 81 60.5
PGSC0003DMG400012418 Solanum tuberosum HOM05D005352 ORTHO05D006371 1.7e-22 109.0 79 63.3
unitig_26.g9534 Utricularia gibba HOM05D005352 ORTHO05D006371 1.7e-22 109.0 71 67.6
arahy.Tifrunner.gnm1.ann1.I7TC1S Arachis hypogaea HOM05D005352 ORTHO05D006371 2.3e-22 108.6 81 58.0
arahy.Tifrunner.gnm1.ann1.UV8WYD Arachis hypogaea HOM05D005352 ORTHO05D006371 3.0e-22 108.2 79 59.5
Os09g0420700 Oryza sativa ssp. japonica HOM05D005352 ORTHO05D006371 3.0e-22 108.2 51 90.2
Potri.011G119000 Populus trichocarpa HOM05D005352 ORTHO05D006371 3.0e-22 108.2 81 61.7
vmacro11864 Vaccinium macrocarpon HOM05D002732 ORTHO05D002955 3.9e-22 107.8 75 68.0
AL3G27810 Arabidopsis lyrata HOM05D005352 ORTHO05D006371 5.0e-22 107.5 66 71.2
AT3G15352 Arabidopsis thaliana HOM05D005352 ORTHO05D006371 5.0e-22 107.5 66 71.2
Dinv03511 Davidia involucrata HOM05D005352 ORTHO05D006371 5.0e-22 107.5 72 69.4
Os02g0794600 Oryza sativa ssp. japonica HOM05D005352 ORTHO05D006371 5.0e-22 107.5 73 67.1
BcaB04g20935 Brassica carinata HOM05D002732 ORTHO05D006371 6.6e-22 107.1 61 75.4
CARHR090370 Cardamine hirsuta HOM05D005352 ORTHO05D006371 8.6e-22 106.7 66 69.7
TWI39G1034 Tripterygium wilfordii HOM05D005352 ORTHO05D006371 1.1e-21 106.3 81 59.3
ECA240G0949 Erigeron canadensis HOM05D005352 ORTHO05D006371 1.5e-21 105.9 82 62.2
Nn7g36574 Nelumbo nucifera HOM05D005352 ORTHO05D006371 1.5e-21 105.9 77 64.9
Ah.06g184190 Amaranthus hybridus HOM05D005352 ORTHO05D006371 1.9e-21 105.5 63 74.6
CiPaw.12G118100 Carya illinoinensis HOM05D005352 ORTHO05D006371 1.9e-21 105.5 80 65.0
DCAR_017140 Daucus carota HOM05D005352 ORTHO05D006371 1.9e-21 105.5 81 61.7
HPP92_010342 Vanilla planifolia HOM05D005352 ORTHO05D006371 1.9e-21 105.5 69 66.7
A01p38690 Brassica napus HOM05D005352 ORTHO05D006371 2.5e-21 105.1 53 83.0
Thhalv10021884m.g Eutrema salsugineum HOM05D005352 ORTHO05D006371 2.5e-21 105.1 53 83.0
Ah.04g164870 Amaranthus hybridus HOM05D005352 ORTHO05D006371 3.3e-21 104.8 81 63.0
Carub.0003s1504 Capsella rubella HOM05D005352 ORTHO05D006371 3.3e-21 104.8 53 84.9
Nitab4.5_0001796g0040 Nicotiana tabacum HOM05D005352 ORTHO05D006371 3.3e-21 104.8 70 64.3
BolC1t04875H Brassica oleracea HOM05D002732 ORTHO05D002955 4.3e-21 104.4 75 65.3
Solyc07g063160.2 Solanum lycopersicum HOM05D005352 ORTHO05D006371 4.3e-21 104.4 79 59.5
BcaC09g48499 Brassica carinata HOM05D005352 ORTHO05D006371 7.3e-21 103.6 53 81.1
Oeu011684.1 Olea europaea HOM05D005352 ORTHO05D006371 7.3e-21 103.6 61 75.4
SGA_v2.0_scaffold34G13815 Striga asiatica HOM05D005352 ORTHO05D006371 7.3e-21 103.6 81 58.0
CSS0006050 Camellia sinensis var. sinensis HOM05D005352 ORTHO05D006371 9.5e-21 103.2 73 65.8
CSS0042186 Camellia sinensis var. sinensis HOM05D005352 ORTHO05D006371 9.5e-21 103.2 73 65.8
arahy.Tifrunner.gnm1.ann1.BBI5VM Arachis hypogaea HOM05D005352 ORTHO05D006371 1.2e-20 102.8 58 74.1
arahy.Tifrunner.gnm1.ann1.XK3P9A Arachis hypogaea HOM05D005352 ORTHO05D006371 1.2e-20 102.8 58 74.1
C01p49110 Brassica napus HOM05D002732 ORTHO05D002955 1.6e-20 102.4 75 64.0
Lsat_1_v5_gn_6_15501 Lactuca sativa HOM05D005352 ORTHO05D006371 1.6e-20 102.4 79 59.5
Lsat_1_v5_gn_9_96160 Lactuca sativa HOM05D005352 ORTHO05D006371 1.6e-20 102.4 81 59.3
Sp3g13580 Schrenkiella parvula HOM05D005352 ORTHO05D006371 2.1e-20 102.1 52 82.7
CAN.G162.62 Capsicum annuum HOM05D005352 ORTHO05D006371 2.8e-20 101.7 61 72.1
Migut.M00807 Erythranthe guttata HOM05D005352 ORTHO05D006371 2.8e-20 101.7 79 59.5
Nn2g14920 Nelumbo nucifera HOM05D005352 ORTHO05D006371 2.8e-20 101.7 67 71.6
THA.LOC104818076 Tarenaya hassleriana HOM05D005352 ORTHO05D006371 4.7e-20 100.9 53 77.4
Medtr0271s0050 Medicago truncatula HOM05D005352 ORTHO05D006371 6.2e-20 100.5 82 57.3
Medtr0648s0010 Medicago truncatula HOM05D005352 ORTHO05D006371 6.2e-20 100.5 82 57.3
TPR.G39025 Trifolium pratense HOM05D005352 ORTHO05D006371 6.2e-20 100.5 58 74.1
AL1G61380 Arabidopsis lyrata HOM05D005352 ORTHO05D006371 8.0e-20 100.1 63 69.8
Carub.0001s4218 Capsella rubella HOM05D005352 ORTHO05D006371 1.4e-19 99.4 52 76.9
THA.LOC104810475 Tarenaya hassleriana HOM05D005352 ORTHO05D006371 1.4e-19 99.4 83 57.8
Thhalv10011917m.g Eutrema salsugineum HOM05D005352 ORTHO05D006371 1.8e-19 99.0 72 65.3
Ca_01841_v3 Cicer arietinum L. HOM05D005352 ORTHO05D006371 2.3e-19 98.6 61 75.4
Aa31LG10G2070 Aethionema arabicum HOM05D005352 ORTHO05D006371 3.1e-19 98.2 73 64.4
Medtr1g092430 Medicago truncatula HOM05D005352 ORTHO05D006371 3.1e-19 98.2 51 80.4
A06p01290 Brassica napus HOM05D005352 ORTHO05D006371 4.0e-19 97.8 81 58.0
BraA06t23355Z Brassica rapa HOM05D005352 ORTHO05D006371 4.0e-19 97.8 81 58.0
CARHR043250 Cardamine hirsuta HOM05D005352 ORTHO05D006371 4.0e-19 97.8 64 67.2
BcaC08g43490 Brassica carinata HOM05D002732 ORTHO05D002955 5.2e-19 97.4 81 54.3
C06p08730 Brassica napus HOM05D005352 ORTHO05D006371 5.2e-19 97.4 81 54.3
BolC6t35949H Brassica oleracea HOM05D005352 ORTHO05D006371 5.2e-19 97.4 81 54.3
AT1G53030 Arabidopsis thaliana HOM05D005352 ORTHO05D006371 6.8e-19 97.1 81 55.6
COL.COLO4_27168 Corchorus olitorius HOM05D005352 ORTHO05D006371 6.8e-19 97.1 77 59.7
Aa31LG8G2560 Aethionema arabicum HOM05D004832 ORTHO05D005821 8.9e-19 96.7 84 56.0
MBI06_g21936_MAGBIO Magnolia biondii HOM05D005352 ORTHO05D006371 8.9e-19 96.7 80 58.8
Mapoly0075s0017 Marchantia polymorpha HOM05D005352 ORTHO05D006371 2.0e-18 95.5 77 59.7
ATR0568G005 Amborella trichopoda HOM05D005352 ORTHO05D006371 2.6e-18 95.1 91 56.0
Psat5g244480 Pisum sativum HOM05D005352 ORTHO05D006371 4.4e-18 94.4 51 76.5
Psat5g287360 Pisum sativum HOM05D005352 ORTHO05D006371 4.4e-18 94.4 51 76.5
Pp3c15_5560 Physcomitrium patens HOM05D005352 ORTHO05D006371 9.8e-18 93.2 81 55.6
Migut.H01937 Erythranthe guttata HOM05D005352 ORTHO05D006371 1.3e-17 92.8 81 54.3
MBI03_g28426_MAGBIO Magnolia biondii HOM05D005352 ORTHO05D006371 2.9e-17 91.7 77 59.7
AagrBONN_evm.TU.Sc2ySwM_228.196 Anthoceros agrestis HOM05D005352 ORTHO05D006371 3.7e-17 91.3 47 76.6
Aqoxy7G00104 Aquilegia oxysepala HOM05D005352 ORTHO05D006371 6.4e-17 90.5 43 86.0
ATR0736G058 Amborella trichopoda HOM05D005352 ORTHO05D006371 8.3e-17 90.1 90 54.4
SEGI_39587 Sequoiadendron giganteum HOM05D005352 ORTHO05D006371 1.9e-16 89.0 82 50.0
Zm00001eb312990 Zea mays HOM05D005352 ORTHO05D006371 4.1e-16 87.8 74 63.5
SMO358G0354 Selaginella moellendorffii HOM05D005352 ORTHO05D006371 2.7e-15 85.1 42 78.6
CBR_g8998 Chara braunii HOM05D004567 ORTHO05D005726 3.3e-13 78.2 46 71.7
Cre05.g232850 Chlamydomonas reinhardtii HOM05D005352 ORTHO05D006371 4.0e-11 71.2 52 65.4
MCO06G059 Micromonas commoda HOM05D005352 ORTHO05D006371 8.9e-11 70.1 57 57.9
BcaB07g33364 Brassica carinata HOM05D005352 ORTHO05D006371 9.9e-10 66.6 63 52.4
CDE08G1336 Ceratophyllum demersum HOM05D005352 ORTHO05D006371 7.8e-07 57.0 56 50.0


User provided reference genes

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