Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN11G0987 Fragaria x ananassa HOM05D006024 ORTHO05D007505 2.5e-192 675.2 340 100.0
FAN11G3540 Fragaria x ananassa HOM05D006024 ORTHO05D007505 4.5e-189 664.5 357 95.2
FvH4_3g43551 Fragaria vesca HOM05D006024 ORTHO05D007505 9.1e-182 640.2 363 91.7
RcHm_v2.0_Chr5g0078111 Rosa chinensis HOM05D006024 ORTHO05D007505 3.5e-173 611.7 363 88.2
Prupe.6G018500 Prunus persica HOM05D006024 ORTHO05D007505 7.0e-158 560.8 362 78.7
MD11G1022800 Malus domestica HOM05D006024 ORTHO05D007505 2.9e-156 555.4 359 79.9
CiPaw.13G165500 Carya illinoinensis HOM05D006024 ORTHO05D007505 5.7e-144 514.6 360 73.6
Atru.chr3.2505 Acer truncatum HOM05D006024 ORTHO05D007505 1.9e-139 499.6 362 71.5
Cfa009695 Carpinus fangiana HOM05D006024 ORTHO05D007505 1.9e-139 499.6 361 72.0
Hma1.2p1_2304F.1_g319350 Hydrangea macrophylla HOM05D006024 ORTHO05D007505 2.5e-139 499.2 362 71.5
CANSAT54G0336 Cannabis sativa HOM05D006024 ORTHO05D007505 3.6e-138 495.4 360 71.1
Thecc.09G223300 Theobroma cacao HOM05D006024 ORTHO05D007505 1.0e-137 493.8 363 70.2
Manes.14G014400 Manihot esculenta HOM05D006024 ORTHO05D007505 2.3e-137 492.7 364 69.5
Eucgr.J00813 Eucalyptus grandis HOM05D006024 ORTHO05D007505 1.2e-136 490.3 363 68.9
Cc01_g04140 Coffea canephora HOM05D006024 ORTHO05D007505 1.5e-136 490.0 363 69.4
TWI60G1552 Tripterygium wilfordii HOM05D006024 ORTHO05D007505 1.5e-136 490.0 363 70.0
Ciclev10015756m.g Citrus clementina HOM05D006024 ORTHO05D007505 2.6e-136 489.2 360 71.7
COL.COLO4_09894 Corchorus olitorius HOM05D006024 ORTHO05D007505 2.6e-136 489.2 357 68.6
CSS0019947 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 4.4e-136 488.4 357 70.3
CSS0045029 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 4.4e-136 488.4 357 70.3
PGR119G1295 Punica granatum HOM05D006024 ORTHO05D007505 7.5e-136 487.6 358 69.6
Cpa.g.sc84.110 Carica papaya HOM05D006024 ORTHO05D007505 6.4e-135 484.6 362 69.3
Potri.T085501 Populus trichocarpa HOM05D006024 ORTHO05D007505 3.2e-134 482.3 361 67.0
GSVIVG01025335001 Vitis vinifera HOM05D006024 ORTHO05D007505 3.2e-134 482.3 363 69.1
Duzib168G0763 Durio zibethinus HOM05D006024 ORTHO05D007505 7.0e-134 481.1 357 69.2
BcaC05g28281 Brassica carinata HOM05D006024 ORTHO05D007505 4.6e-133 478.4 353 68.8
A05p27990 Brassica napus HOM05D006024 ORTHO05D007505 4.6e-133 478.4 362 68.2
Sed0023125 Sechium edule HOM05D006024 ORTHO05D007505 7.8e-133 477.6 363 68.3
BcaB06g26149 Brassica carinata HOM05D006024 ORTHO05D007505 1.0e-132 477.2 353 68.8
Gorai.010G128200 Gossypium raimondii HOM05D006024 ORTHO05D007505 1.0e-132 477.2 363 68.6
QL01p006224 Quercus lobata HOM05D006024 ORTHO05D007505 2.3e-132 476.1 390 63.8
Gohir.D06G112300 Gossypium hirsutum HOM05D006024 ORTHO05D007505 3.0e-132 475.7 363 68.3
Potri.003G210900 Populus trichocarpa HOM05D006024 ORTHO05D007505 3.0e-132 475.7 361 66.8
CsaV3_4G023790 Cucumis sativus L. HOM05D006024 ORTHO05D007505 6.6e-132 474.6 363 68.3
MELO3C014640.2 Cucumis melo HOM05D006024 ORTHO05D007505 2.1e-130 469.5 364 67.0
Aqoxy1G00184 Aquilegia oxysepala HOM05D006024 ORTHO05D007505 2.8e-130 469.2 363 65.8
Oeu042179.3 Olea europaea HOM05D006024 ORTHO05D007505 4.7e-130 468.4 363 65.0
Sopen01g002620 Solanum pennellii HOM05D006024 ORTHO05D007505 4.7e-130 468.4 363 66.1
Nn7g36060 Nelumbo nucifera HOM05D006024 ORTHO05D007505 1.1e-129 467.2 360 65.6
Solyc01g006630.3 Solanum lycopersicum HOM05D006024 ORTHO05D007505 1.4e-129 466.8 363 66.1
Lsat_1_v5_gn_6_50101 Lactuca sativa HOM05D006024 ORTHO05D007505 1.8e-129 466.5 355 66.8
Nitab4.5_0003796g0050 Nicotiana tabacum HOM05D006024 ORTHO05D007505 2.3e-129 466.1 356 66.9
Peaxi162Scf00559g00415 Petunia axillaris HOM05D006024 ORTHO05D007505 2.3e-129 466.1 356 66.6
PSO339G6331 Papaver somniferum HOM05D006024 ORTHO05D007505 2.0e-128 463.0 364 64.3
Phvul.005G150400 Phaseolus vulgaris HOM05D006024 ORTHO05D007505 2.0e-128 463.0 361 67.3
BraA05t21682Z Brassica rapa HOM05D006024 ORTHO05D007505 3.4e-128 462.2 362 66.0
Glyma.13G342800 Glycine max HOM05D006024 ORTHO05D007505 4.4e-128 461.8 361 67.3
Thhalv10021019m.g Eutrema salsugineum HOM05D006024 ORTHO05D007505 7.5e-128 461.1 359 66.3
HanXRQChr02g0056471 Helianthus annuus HOM05D006024 ORTHO05D007505 7.5e-128 461.1 360 66.7
Sp3g18810 Schrenkiella parvula HOM05D006024 ORTHO05D007505 9.8e-128 460.7 359 66.0
Ca_01271_v3 Cicer arietinum L. HOM05D006024 ORTHO05D007505 2.2e-127 459.5 359 66.6
AT3G20790 Arabidopsis thaliana HOM05D006024 ORTHO05D007505 2.9e-127 459.1 360 65.8
BolC5t33061H Brassica oleracea HOM05D006024 ORTHO05D007505 8.3e-127 457.6 359 65.7
TPR.G18832 Trifolium pratense HOM05D006024 ORTHO05D007505 1.1e-126 457.2 363 66.4
VMungo1080G1755 Vigna mungo HOM05D004763 ORTHO05D007492 1.1e-126 457.2 361 66.5
DCAR_002037 Daucus carota HOM05D006024 ORTHO05D007505 1.4e-126 456.8 359 66.9
C05p43290 Brassica napus HOM05D006024 ORTHO05D007505 1.9e-126 456.4 359 65.5
CARHR096620 Cardamine hirsuta HOM05D006024 ORTHO05D007505 2.4e-126 456.1 360 65.6
Migut.D00559 Erythranthe guttata HOM05D006024 ORTHO05D007505 2.4e-126 456.1 342 68.7
AL3G34710 Arabidopsis lyrata HOM05D006024 ORTHO05D007505 4.1e-126 455.3 360 65.8
Carub.0003s2075 Capsella rubella HOM05D006024 ORTHO05D007505 4.1e-126 455.3 360 65.8
Lj4g0026168 Lotus japonicus HOM05D006024 ORTHO05D007505 9.2e-126 454.1 359 65.7
THA.LOC104816910 Tarenaya hassleriana HOM05D006024 ORTHO05D007505 9.2e-126 454.1 359 65.5
arahy.Tifrunner.gnm1.ann1.7L1RE9 Arachis hypogaea HOM05D006024 ORTHO05D007505 2.7e-125 452.6 357 65.0
Lj3g0007180 Lotus japonicus HOM05D006024 ORTHO05D007505 3.5e-125 452.2 359 65.7
MSTRG.21409 Avicennia marina HOM05D006024 ORTHO05D007505 3.0e-124 449.1 361 65.7
AUR62019251 Chenopodium quinoa HOM05D006024 ORTHO05D007505 1.2e-122 443.7 357 63.9
Lalb_Chr24g0396941 Lupinus albus HOM05D006024 ORTHO05D007505 1.8e-121 439.9 361 63.7
Medtr2g098500 Medicago truncatula HOM05D006024 ORTHO05D007505 1.5e-120 436.8 359 65.2
AUR62000078 Chenopodium quinoa HOM05D006024 ORTHO05D007505 2.0e-120 436.4 357 62.7
CAN.G388.68 Capsicum annuum HOM05D006024 ORTHO05D007505 5.8e-120 434.9 387 59.4
EL10Ac4g10317 Beta vulgaris HOM05D006024 ORTHO05D007505 2.9e-119 432.6 363 62.0
Dinv36303 Davidia involucrata HOM05D006024 ORTHO05D007505 3.7e-119 432.2 320 70.6
Hund22080 Selenicereus undatus HOM05D006024 ORTHO05D007505 1.2e-117 427.2 357 63.0
MSTRG.12483 Avicennia marina HOM05D006024 ORTHO05D007505 2.3e-116 422.9 360 60.6
Gohir.A06G108500 Gossypium hirsutum HOM05D006024 ORTHO05D007505 2.4e-113 412.9 363 62.0
vmacro04169 Vaccinium macrocarpon HOM05D006024 ORTHO05D007505 3.1e-113 412.5 473 50.7
Migut.N02293 Erythranthe guttata HOM05D006024 ORTHO05D007505 6.8e-113 411.4 362 59.4
Lju1319A3G40 Lonicera japonica HOM05D006024 ORTHO05D007505 8.9e-113 411.0 370 60.3
Os09g0280300 Oryza sativa ssp. japonica HOM05D006024 ORTHO05D007505 1.2e-112 410.6 359 59.3
Lj1A365G18 Lonicera japonica HOM05D006024 ORTHO05D007505 4.4e-112 408.7 374 59.4
MBI04_g27131_MAGBIO Magnolia biondii HOM05D006024 ORTHO05D007505 2.9e-111 406.0 353 59.5
arahy.Tifrunner.gnm1.ann1.3AB71G Arachis hypogaea HOM05D006024 ORTHO05D007505 1.6e-109 400.2 349 60.2
Aa31LG8G7600 Aethionema arabicum HOM05D006024 ORTHO05D007505 1.3e-108 397.1 358 60.6
VMungo0251G0909 Vigna mungo HOM05D006024 ORTHO05D007505 3.0e-108 396.0 361 57.6
ATR0605G294 Amborella trichopoda HOM05D006024 ORTHO05D007505 1.1e-107 394.0 359 57.1
VMungo1080G1390 Vigna mungo HOM05D006024 ORTHO05D007505 1.1e-107 394.0 361 56.5
SGA_v2.0_scaffold1G00800 Striga asiatica HOM05D006024 ORTHO05D007505 7.1e-102 374.8 359 57.4
SEGI_39854 Sequoiadendron giganteum HOM05D006024 ORTHO05D007505 1.8e-97 360.1 359 53.2
Haze_23046 Corylus avellana HOM05D006024 ORTHO05D007505 2.9e-95 352.8 292 65.4
unitig_8.g3081 Utricularia gibba HOM05D006024 ORTHO05D007505 8.4e-95 351.3 357 54.3
Rhsim13G0225400 Rhododendron simsii HOM05D006024 ORTHO05D007505 3.1e-89 332.8 258 65.9
TAR636G0774 Trochodendron aralioides HOM05D006024 ORTHO05D007505 5.3e-89 332.0 253 65.2
Sc06g0004470 Simmondsia chinensis HOM05D006024 ORTHO05D007505 1.0e-87 327.8 258 63.6
ECA233G0904 Erigeron canadensis HOM05D006024 ORTHO05D007505 1.4e-86 323.9 257 63.8
Pp3c6_24290 Physcomitrium patens HOM05D006024 ORTHO05D007505 4.2e-86 322.4 358 45.5
Nitab4.5_0008137g0040 Nicotiana tabacum HOM05D006024 ORTHO05D007505 2.4e-81 306.6 339 51.6
Pp3c16_13070 Physcomitrium patens HOM05D006024 ORTHO05D007505 1.7e-79 300.4 381 41.5
Mapoly0150s0011 Marchantia polymorpha HOM05D006024 ORTHO05D007505 1.9e-75 287.0 360 42.5
AagrBONN_evm.TU.Sc2ySwM_344.3372 Anthoceros agrestis HOM05D006024 ORTHO05D007505 6.9e-73 278.5 361 42.7
SMO116G0160 Selaginella moellendorffii HOM05D006024 ORTHO05D007505 6.9e-73 278.5 359 42.9
FAN16G2307 Fragaria x ananassa HOM05D006024 ORTHO05D007505 9.0e-73 278.1 143 98.6
SMO146G0097 Selaginella moellendorffii HOM05D006024 ORTHO05D007505 1.4e-70 270.8 349 42.7
ClCG02G023630 Citrullus lanatus HOM05D006024 ORTHO05D007505 5.1e-68 262.3 204 65.7
Zm00001eb094580 Zea mays HOM05D006024 ORTHO05D007505 5.0e-63 245.7 185 64.9
SMO144G0113 Selaginella moellendorffii HOM05D006024 ORTHO05D007505 9.4e-62 241.5 349 40.1
Mapoly0033s0066 Marchantia polymorpha HOM05D006024 ORTHO05D007505 5.9e-56 222.2 362 36.5
Pp3c3_20310 Physcomitrium patens HOM05D006024 ORTHO05D007505 2.9e-55 219.9 356 37.4
AagrBONN_evm.TU.Sc2ySwM_344.254 Anthoceros agrestis HOM05D006024 ORTHO05D007505 6.5e-55 218.8 349 35.8
FAN25G0441 Fragaria x ananassa HOM05D006024 ORTHO05D007505 1.8e-49 200.7 138 76.8
TAR636G1381 Trochodendron aralioides HOM05D006024 ORTHO05D007505 3.7e-42 176.4 183 55.7
HPP92_000457 Vanilla planifolia HOM05D006024 ORTHO05D007505 1.1e-38 164.9 146 61.0
Sc06g0004480 Simmondsia chinensis HOM05D006024 ORTHO05D007505 1.5e-35 154.5 107 72.0
ECA233G1997 Erigeron canadensis HOM05D006024 ORTHO05D007505 6.6e-31 139.0 101 70.3
Psat6g204000 Pisum sativum HOM05D006024 ORTHO05D007505 2.5e-30 137.1 155 51.6
Rhsim13G0225300 Rhododendron simsii HOM05D006024 ORTHO05D007505 4.3e-30 136.3 90 77.8
Psat7g086040 Pisum sativum HOM05D006024 ORTHO05D007505 3.6e-29 133.3 210 41.4
Glyma.15G031500 Glycine max HOM05D006024 ORTHO05D007505 8.0e-29 132.1 137 54.7
Psat5g288680 Pisum sativum HOM05D006024 ORTHO05D007505 1.8e-28 131.0 93 71.0
Cre01.g023300 Chlamydomonas reinhardtii HOM05D006024 ORTHO05D007505 7.5e-27 125.6 408 27.2
Actinidia16298 Actinidia chinensis HOM05D006024 ORTHO05D007505 3.5e-24 116.7 92 63.0
Medtr8g016390 Medicago truncatula HOM05D006024 ORTHO05D007505 6.6e-23 112.5 98 59.2
Psat5g288640 Pisum sativum HOM05D006024 ORTHO05D007505 1.1e-22 111.7 137 47.4
CSS0049558 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 4.0e-20 103.2 88 63.6
CSS0042824 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 1.2e-19 101.7 88 62.5
C01p43430 Brassica napus HOM05D006024 ORTHO05D007505 9.8e-19 98.6 100 53.0
BolC1t04302H Brassica oleracea HOM05D006024 ORTHO05D007505 9.8e-19 98.6 100 53.0
Cfa023900 Carpinus fangiana HOM05D006024 ORTHO05D007505 1.1e-17 95.1 362 25.7
CSS0043067 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 5.0e-15 86.3 95 53.7
BcaC09g49021 Brassica carinata HOM05D006024 ORTHO05D007505 4.0e-12 76.6 78 56.4


User provided reference genes

Program Settings