Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN11G0915 Fragaria x ananassa HOM05D004137 ORTHO05D004804 7.2e-28 127.1 95 100.0
FvH4_3g45760 Fragaria vesca HOM05D004137 ORTHO05D004804 1.6e-27 125.9 95 98.9
FAN25G2990 Fragaria x ananassa HOM05D004137 ORTHO05D004804 3.0e-26 121.7 95 81.1
FAN16G1350 Fragaria x ananassa HOM05D004137 ORTHO05D004804 4.0e-26 121.3 61 98.4
FAN21G2465 Fragaria x ananassa HOM05D004137 ORTHO05D004804 4.0e-26 121.3 61 98.4
RcHm_v2.0_Chr5g0083831 Rosa chinensis HOM05D004137 ORTHO05D004804 2.4e-23 112.1 61 90.2
Haze_22939 Corylus avellana HOM05D004137 ORTHO05D004804 3.8e-21 104.8 61 78.7
QL01p003617 Quercus lobata HOM05D004137 ORTHO05D004804 1.1e-20 103.2 61 78.7
Prupe.6G003100 Prunus persica HOM05D004137 ORTHO05D004804 1.2e-19 99.8 61 80.3
CANSAT11G0501 Cannabis sativa HOM05D004137 ORTHO05D004804 2.1e-19 99.0 61 78.7
MD11G1003200 Malus domestica HOM05D004137 ORTHO05D004804 3.6e-19 98.2 61 77.0
CiPaw.13G177400 Carya illinoinensis HOM05D004137 ORTHO05D004804 1.0e-18 96.7 60 73.3
CSS0017288 Camellia sinensis var. sinensis HOM05D004137 ORTHO05D004804 1.8e-18 95.9 61 70.5
MD03G1003400 Malus domestica HOM05D004137 ORTHO05D004804 1.5e-17 92.8 60 73.3
Potri.001G003500 Populus trichocarpa HOM05D004137 ORTHO05D004804 3.4e-17 91.7 63 71.4
TWI34G1879 Tripterygium wilfordii HOM05D004137 ORTHO05D004804 2.8e-16 88.6 62 66.1
Cpa.g.c44905 Carica papaya HOM05D004137 ORTHO05D004804 1.1e-15 86.7 62 69.4
Ciclev10017215m.g Citrus clementina HOM05D004137 ORTHO05D004804 1.4e-15 86.3 64 65.6
Manes.15G109500 Manihot esculenta HOM05D004137 ORTHO05D004804 1.4e-15 86.3 63 68.3
Potri.003G221500 Populus trichocarpa HOM05D004137 ORTHO05D004804 1.4e-15 86.3 63 66.7
Nn7g35858 Nelumbo nucifera HOM05D004137 ORTHO05D004804 1.8e-15 85.9 61 68.9
Nn2g15861 Nelumbo nucifera HOM05D004137 ORTHO05D004804 2.4e-15 85.5 61 67.2
TWI60G1175 Tripterygium wilfordii HOM05D004137 ORTHO05D004804 2.4e-15 85.5 61 65.6
Atru.chr3.2107 Acer truncatum HOM05D004137 ORTHO05D004804 3.1e-15 85.1 63 63.5
Hma1.2p1_0241F.1_g100550 Hydrangea macrophylla HOM05D004137 ORTHO05D004804 3.1e-15 85.1 63 61.9
Nitab4.5_0000528g0100 Nicotiana tabacum HOM05D004137 ORTHO05D004804 7.0e-15 84.0 61 63.9
Nitab4.5_0005935g0010 Nicotiana tabacum HOM05D004137 ORTHO05D004804 7.0e-15 84.0 61 63.9
Eucgr.B03601 Eucalyptus grandis HOM05D004137 ORTHO05D004804 9.1e-15 83.6 63 63.5
Lsat_1_v5_gn_1_68820 Lactuca sativa HOM05D004137 ORTHO05D004804 1.2e-14 83.2 61 62.3
Solyc11g042440.1 Solanum lycopersicum HOM05D004137 ORTHO05D004804 1.6e-14 82.8 61 62.3
Sopen11g018520 Solanum pennellii HOM05D004137 ORTHO05D004804 1.6e-14 82.8 61 62.3
TAR623G1005 Trochodendron aralioides HOM05D004137 ORTHO05D004804 1.6e-14 82.8 61 63.9
QL04p040762 Quercus lobata HOM05D004137 ORTHO05D004804 2.0e-14 82.4 50 74.0
HanXRQChr01g0021421 Helianthus annuus HOM05D004137 ORTHO05D004804 3.5e-14 81.6 61 59.0
ECA248G0157 Erigeron canadensis HOM05D004137 ORTHO05D004804 5.9e-14 80.9 61 59.0
Migut.N00553 Erythranthe guttata HOM05D004137 ORTHO05D004804 5.9e-14 80.9 61 62.3
Sopen06g023090 Solanum pennellii HOM05D004137 ORTHO05D004804 1.0e-13 80.1 61 63.9
Solyc06g064610.1 Solanum lycopersicum HOM05D004137 ORTHO05D004804 1.3e-13 79.7 61 62.3
PGSC0003DMG400037247 Solanum tuberosum HOM05D004137 ORTHO05D004804 1.3e-13 79.7 61 60.7
Manes.03G087303 Manihot esculenta HOM05D004137 ORTHO05D004804 1.7e-13 79.3 62 64.5
Carub.0007s1461 Capsella rubella HOM05D004137 ORTHO05D004804 2.3e-13 79.0 63 60.3
DCAR_023854 Daucus carota HOM05D004137 ORTHO05D004804 2.3e-13 79.0 60 60.0
CARHR233900 Cardamine hirsuta HOM05D004137 ORTHO05D004804 2.9e-13 78.6 63 60.3
PGSC0003DMG400033149 Solanum tuberosum HOM05D004137 ORTHO05D004804 2.9e-13 78.6 60 65.0
Cc01_g00130 Coffea canephora HOM05D004137 ORTHO05D004804 5.0e-13 77.8 63 61.9
Sed0012847 Sechium edule HOM05D004137 ORTHO05D004804 5.0e-13 77.8 61 63.9
ATR0737G017 Amborella trichopoda HOM05D004137 ORTHO05D004804 1.5e-12 76.3 60 63.3
Lsat_1_v5_gn_2_50221 Lactuca sativa HOM05D004137 ORTHO05D004804 3.2e-12 75.1 60 58.3
Sp7g24280 Schrenkiella parvula HOM05D004137 ORTHO05D004804 3.2e-12 75.1 63 60.3
AL7G26620 Arabidopsis lyrata HOM05D004137 ORTHO05D004804 9.5e-12 73.6 62 58.1
Lj4g0013694 Lotus japonicus HOM05D004137 ORTHO05D004804 9.5e-12 73.6 60 56.7
THA.LOC104811721 Tarenaya hassleriana HOM05D004137 ORTHO05D004804 9.5e-12 73.6 63 57.1
Migut.J01885 Erythranthe guttata HOM05D004137 ORTHO05D004804 1.2e-11 73.2 61 63.9
Psat7g063840 Pisum sativum HOM05D004137 ORTHO05D004804 1.2e-11 73.2 60 55.0
CAN.G960.46 Capsicum annuum HOM05D004137 ORTHO05D004804 3.6e-11 71.6 60 61.7
ClCG02G024390 Citrullus lanatus HOM05D004137 ORTHO05D004804 4.7e-11 71.2 60 63.3
Manes.08G144511 Manihot esculenta HOM05D004137 ORTHO05D004804 6.1e-11 70.9 61 60.7
SGA_v2.0_scaffold3G01677 Striga asiatica HOM05D004137 ORTHO05D004804 6.1e-11 70.9 61 54.1
Thhalv10027319m.g Eutrema salsugineum HOM05D004137 ORTHO05D004804 8.0e-11 70.5 63 55.6
Lsat_1_v5_gn_1_59720 Lactuca sativa HOM05D004137 ORTHO05D004804 1.8e-10 69.3 61 55.7
C03p92680 Brassica napus HOM05D004137 ORTHO05D004804 6.8e-10 67.4 62 50.0
C07p54810 Brassica napus HOM05D004137 ORTHO05D004804 6.8e-10 67.4 63 57.1
BolC7t45970H Brassica oleracea HOM05D004137 ORTHO05D004804 6.8e-10 67.4 63 57.1
Ah.13g075420 Amaranthus hybridus HOM05D004137 ORTHO05D004804 8.8e-10 67.0 60 58.3
Solyc10g078570.1 Solanum lycopersicum HOM05D004137 ORTHO05D004804 8.8e-10 67.0 60 56.7
PGSC0003DMG400008382 Solanum tuberosum HOM05D004137 ORTHO05D004804 8.8e-10 67.0 60 56.7
THA.LOC104810322 Tarenaya hassleriana HOM05D004137 ORTHO05D004804 8.8e-10 67.0 62 53.2
BcaC01g01518 Brassica carinata HOM05D004137 ORTHO05D004804 1.2e-09 66.6 62 50.0
BcaC08g43620 Brassica carinata HOM05D004137 ORTHO05D004804 1.2e-09 66.6 63 52.4
A06p00220 Brassica napus HOM05D004137 ORTHO05D004804 1.2e-09 66.6 63 52.4
C06p10340 Brassica napus HOM05D004137 ORTHO05D004804 1.2e-09 66.6 63 52.4
BolC3t21580H Brassica oleracea HOM05D004137 ORTHO05D004804 1.2e-09 66.6 62 50.0
BolC6t36110H Brassica oleracea HOM05D004137 ORTHO05D004804 1.2e-09 66.6 63 52.4
BraA06t23238Z Brassica rapa HOM05D004137 ORTHO05D004804 1.2e-09 66.6 63 52.4
HanXRQChr02g0057501 Helianthus annuus HOM05D004137 ORTHO05D004804 1.5e-09 66.2 60 45.0
Manes.09G141000 Manihot esculenta HOM05D004137 ORTHO05D004804 2.0e-09 65.9 61 55.7
AT5G56520 Arabidopsis thaliana HOM05D004137 ORTHO05D004804 2.6e-09 65.5 63 50.8
Thhalv10011858m.g Eutrema salsugineum HOM05D004137 ORTHO05D004804 2.6e-09 65.5 63 49.2
Medtr8g088460 Medicago truncatula HOM05D004137 ORTHO05D004804 2.6e-09 65.5 60 51.7
Carub.0001s4388 Capsella rubella HOM05D004137 ORTHO05D004804 3.4e-09 65.1 62 48.4
unitig_0.g1150 Utricularia gibba HOM05D004137 ORTHO05D004804 3.4e-09 65.1 61 55.7
BcaNung02428 Brassica carinata HOM05D004137 ORTHO05D004804 4.4e-09 64.7 63 55.6
A08p00680 Brassica napus HOM05D004137 ORTHO05D004804 4.4e-09 64.7 63 46.0
BraA08t32126Z Brassica rapa HOM05D004137 ORTHO05D004804 4.4e-09 64.7 63 46.0
Potri.013G057832 Populus trichocarpa HOM05D004137 ORTHO05D004804 4.4e-09 64.7 61 54.1
AL8G32280 Arabidopsis lyrata HOM05D004137 ORTHO05D004804 5.7e-09 64.3 63 50.8
BcaC06g32758 Brassica carinata HOM05D004137 ORTHO05D004804 5.7e-09 64.3 63 54.0
BcaC08g44196 Brassica carinata HOM05D004137 ORTHO05D004804 5.7e-09 64.3 63 49.2
A05p17500 Brassica napus HOM05D004137 ORTHO05D004804 5.7e-09 64.3 63 49.2
BolC6t36802H Brassica oleracea HOM05D004137 ORTHO05D004804 5.7e-09 64.3 63 49.2
BraA03t14731Z Brassica rapa HOM05D004137 ORTHO05D004804 5.7e-09 64.3 63 54.0
BcaC09g50691 Brassica carinata HOM05D004137 ORTHO05D004804 7.5e-09 63.9 63 52.4
A03p56610 Brassica napus HOM05D004137 ORTHO05D004804 7.5e-09 63.9 63 54.0
Phvul.002G247400 Phaseolus vulgaris HOM05D004137 ORTHO05D004804 9.8e-09 63.5 60 56.7
AL1G63420 Arabidopsis lyrata HOM05D004137 ORTHO05D004804 1.3e-08 63.2 62 48.4
arahy.Tifrunner.gnm1.ann1.K19UZV Arachis hypogaea HOM05D004137 ORTHO05D004804 1.3e-08 63.2 53 60.4
C01p22180 Brassica napus HOM05D004137 ORTHO05D004804 1.3e-08 63.2 63 52.4
BraA01t01711Z Brassica rapa HOM05D004137 ORTHO05D004804 1.3e-08 63.2 63 52.4
Gohir.A12G175500 Gossypium hirsutum HOM05D004137 ORTHO05D004804 1.3e-08 63.2 61 52.5
A10p13890 Brassica napus HOM05D004137 ORTHO05D004804 1.7e-08 62.8 63 49.2
BolC1t02148H Brassica oleracea HOM05D004137 ORTHO05D004804 1.7e-08 62.8 63 50.8
BraA10t43481Z Brassica rapa HOM05D004137 ORTHO05D004804 1.7e-08 62.8 63 49.2
CARHR045030 Cardamine hirsuta HOM05D004137 ORTHO05D004804 1.7e-08 62.8 62 45.2
Gohir.D12G178750 Gossypium hirsutum HOM05D004137 ORTHO05D004804 1.7e-08 62.8 61 54.1
AT1G55365 Arabidopsis thaliana HOM05D004137 ORTHO05D004804 2.8e-08 62.0 62 46.8
Cc06_g23020 Coffea canephora HOM05D004137 ORTHO05D004804 2.8e-08 62.0 60 55.0
Gorai.008G191500 Gossypium raimondii HOM05D004137 ORTHO05D004804 2.8e-08 62.0 61 52.5
Sp1g41045 Schrenkiella parvula HOM05D004137 ORTHO05D004804 2.8e-08 62.0 62 48.4
PGR102G2770 Punica granatum HOM05D004137 ORTHO05D004804 3.7e-08 61.6 61 54.1
Thhalv10015369m.g Eutrema salsugineum HOM05D004137 ORTHO05D004804 4.9e-08 61.2 63 47.6
BcaB04g16959 Brassica carinata HOM05D004137 ORTHO05D004804 6.3e-08 60.8 63 49.2
BcaC04g20079 Brassica carinata HOM05D004137 ORTHO05D004804 6.3e-08 60.8 63 47.6
C09p48110 Brassica napus HOM05D004137 ORTHO05D004804 6.3e-08 60.8 63 47.6
BolC9t57661H Brassica oleracea HOM05D004137 ORTHO05D004804 6.3e-08 60.8 63 47.6
Ciclev10023092m.g Citrus clementina HOM05D004137 ORTHO05D004804 6.3e-08 60.8 58 51.7
Potri.013G057766 Populus trichocarpa HOM05D004137 ORTHO05D004804 6.3e-08 60.8 61 52.5
Carub.0008s1700 Capsella rubella HOM05D004137 ORTHO05D004804 1.8e-07 59.3 63 46.0
CARHR270170 Cardamine hirsuta HOM05D004137 ORTHO05D004804 1.8e-07 59.3 63 47.6
HPP92_015924 Vanilla planifolia HOM05D004137 ORTHO05D004804 1.8e-07 59.3 60 55.0
A01p17580 Brassica napus HOM05D004137 ORTHO05D004804 4.1e-07 58.2 63 50.8
C03p15600 Brassica napus HOM05D004137 ORTHO05D004804 4.1e-07 58.2 61 45.9
BolC3t13997H Brassica oleracea HOM05D004137 ORTHO05D004804 4.1e-07 58.2 61 45.9
VMungo1383G2992 Vigna mungo HOM05D001291 ORTHO05D004804 4.1e-07 58.2 60 51.7
Aa31LG3G12400 Aethionema arabicum HOM05D004137 ORTHO05D004804 5.4e-07 57.8 63 42.9
BcaC03g14217 Brassica carinata HOM05D004137 ORTHO05D004804 7.0e-07 57.4 63 44.4
C02p15170 Brassica napus HOM05D004137 ORTHO05D004804 7.0e-07 57.4 63 44.4
Glyma.08G125200 Glycine max HOM05D004137 ORTHO05D004804 7.0e-07 57.4 60 53.3
Lalb_Chr13g0295561 Lupinus albus HOM05D004137 ORTHO05D004804 1.2e-06 56.6 56 48.2
Lalb_Chr07g0185901 Lupinus albus HOM05D004137 ORTHO05D004804 4.5e-06 54.7 59 44.1
Lalb_Chr14g0364521 Lupinus albus HOM05D004137 ORTHO05D004804 4.5e-06 54.7 57 49.1


User provided reference genes

Program Settings