Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN11G0890 Fragaria x ananassa HOM05D004336 ORTHO05D005367 1.6e-307 1058.5 507 100.0
FvH4_3g23790 Fragaria vesca HOM05D004336 ORTHO05D005367 5.1e-306 1053.5 507 99.4
FAN25G1677 Fragaria x ananassa HOM05D004336 ORTHO05D005367 4.5e-302 1040.4 507 98.0
FAN21G2219 Fragaria x ananassa HOM05D004336 ORTHO05D005367 1.6e-291 1005.4 520 94.2
RcHm_v2.0_Chr5g0041971 Rosa chinensis HOM05D004336 ORTHO05D005367 3.1e-271 937.9 511 89.8
Prupe.4G229800 Prunus persica HOM05D004336 ORTHO05D005367 7.8e-238 827.0 515 77.3
MD03G1190200 Malus domestica HOM05D004336 ORTHO05D005367 3.1e-234 815.1 513 77.0
Cfa020245 Carpinus fangiana HOM05D004336 ORTHO05D005367 6.9e-218 760.8 508 73.4
Haze_09771 Corylus avellana HOM05D004336 ORTHO05D005367 1.2e-214 750.0 504 73.6
TWI38G0192 Tripterygium wilfordii HOM05D004336 ORTHO05D005367 3.5e-214 748.4 517 71.4
CiPaw.11G199400 Carya illinoinensis HOM05D004336 ORTHO05D005367 4.6e-214 748.0 515 72.0
Dinv40824 Davidia involucrata HOM05D004336 ORTHO05D005367 3.1e-210 735.3 520 70.2
TWI38G0059 Tripterygium wilfordii HOM05D004336 ORTHO05D005367 1.2e-209 733.4 519 69.4
ClCG09G020990 Citrullus lanatus HOM05D004336 ORTHO05D005367 5.8e-209 731.1 505 71.3
Lj6g0007567 Lotus japonicus HOM05D004336 ORTHO05D005367 5.8e-209 731.1 515 70.9
Peaxi162Scf00285g00932 Petunia axillaris HOM05D004336 ORTHO05D005367 1.9e-207 726.1 522 67.6
CsaV3_7G018720 Cucumis sativus L. HOM05D004336 ORTHO05D005367 5.4e-207 724.5 504 70.2
Actinidia05042 Actinidia chinensis HOM05D004336 ORTHO05D005367 9.3e-207 723.8 516 68.4
CAN.G337.39 Capsicum annuum HOM05D004336 ORTHO05D005367 7.9e-206 720.7 532 67.3
CSS0041250 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 1.0e-205 720.3 506 69.6
CSS0047700 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 1.0e-205 720.3 506 69.6
CSS0014417 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 1.9e-204 716.1 506 69.2
CSS0044060 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 1.9e-204 716.1 506 69.2
Nitab4.5_0010102g0040 Nicotiana tabacum HOM05D004336 ORTHO05D005367 2.5e-204 715.7 525 67.4
arahy.Tifrunner.gnm1.ann1.KR0ZCF Arachis hypogaea HOM05D004336 ORTHO05D005367 3.3e-204 715.3 514 68.5
PGSC0003DMG400022194 Solanum tuberosum HOM05D004336 ORTHO05D005367 7.4e-204 714.1 525 66.9
Duzib170G1061 Durio zibethinus HOM05D004336 ORTHO05D005367 9.6e-204 713.8 513 67.6
Thecc.07G024300 Theobroma cacao HOM05D004336 ORTHO05D005367 2.1e-203 712.6 506 68.8
Actinidia00105 Actinidia chinensis HOM05D004336 ORTHO05D005367 2.8e-203 712.2 516 68.4
Nitab4.5_0001160g0150 Nicotiana tabacum HOM05D004336 ORTHO05D005367 2.8e-203 712.2 532 66.9
Sopen07g033360 Solanum pennellii HOM05D004336 ORTHO05D005367 3.7e-203 711.8 530 66.2
HanXRQChr17g0546171 Helianthus annuus HOM05D004336 ORTHO05D005367 4.8e-203 711.4 515 67.0
PGR083G2301 Punica granatum HOM05D004336 ORTHO05D005367 4.8e-203 711.4 520 67.1
Ca_14783_v3 Cicer arietinum L. HOM05D004336 ORTHO05D005367 1.4e-202 709.9 519 68.6
CSS0013990 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 1.8e-202 709.5 510 69.4
arahy.Tifrunner.gnm1.ann1.K6BPDT Arachis hypogaea HOM05D004336 ORTHO05D005367 2.4e-202 709.1 520 67.7
CSS0031037 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 2.4e-202 709.1 510 69.2
Solyc07g065140.4 Solanum lycopersicum HOM05D004336 ORTHO05D005367 2.4e-202 709.1 527 65.7
Gohir.A01G085900 Gossypium hirsutum HOM05D004336 ORTHO05D005367 5.3e-202 708.0 515 67.8
Glyma.18G085100 Glycine max HOM05D004336 ORTHO05D005367 9.0e-202 707.2 513 69.4
Oeu057077.1 Olea europaea HOM05D004336 ORTHO05D005367 2.0e-201 706.1 546 64.7
Oeu057079.1 Olea europaea HOM05D004336 ORTHO05D005367 2.0e-201 706.1 546 64.7
Phvul.006G051000 Phaseolus vulgaris HOM05D004336 ORTHO05D005367 2.6e-201 705.7 516 68.2
COL.COLO4_09762 Corchorus olitorius HOM05D004336 ORTHO05D005367 3.4e-201 705.3 510 67.8
TAR627G0502 Trochodendron aralioides HOM05D004336 ORTHO05D005367 4.5e-201 704.9 522 67.0
Manes.15G064500 Manihot esculenta HOM05D004336 ORTHO05D005367 8.4e-200 700.7 531 65.5
Gorai.002G095200 Gossypium raimondii HOM05D004336 ORTHO05D005367 1.9e-199 699.5 509 67.6
Migut.H01779 Erythranthe guttata HOM05D004336 ORTHO05D005367 2.5e-199 699.1 508 65.9
Cpa.g.sc12.209 Carica papaya HOM05D004336 ORTHO05D005367 3.2e-199 698.7 529 65.0
Aqoxy1G04042 Aquilegia oxysepala HOM05D004336 ORTHO05D005367 7.1e-199 697.6 520 65.2
MSTRG.13007 Avicennia marina HOM05D004336 ORTHO05D005367 7.1e-199 697.6 513 66.9
Sed0027079 Sechium edule HOM05D004336 ORTHO05D005367 7.1e-199 697.6 506 67.8
Lalb_Chr18g0050361 Lupinus albus HOM05D004336 ORTHO05D005367 2.1e-198 696.0 517 66.9
Psat5g171920 Pisum sativum HOM05D004336 ORTHO05D005367 2.1e-198 696.0 516 69.6
Medtr3g055690 Medicago truncatula HOM05D004336 ORTHO05D005367 4.6e-198 694.9 520 67.1
Potri.001G360600 Populus trichocarpa HOM05D004336 ORTHO05D005367 6.7e-197 691.0 518 67.6
Eucgr.F03516 Eucalyptus grandis HOM05D004336 ORTHO05D005367 2.5e-196 689.1 503 67.4
Lsat_1_v5_gn_7_114040 Lactuca sativa HOM05D004336 ORTHO05D005367 3.3e-196 688.7 525 64.2
VMungo0540G2288 Vigna mungo HOM05D004336 ORTHO05D005367 1.6e-195 686.4 545 64.2
Glyma.08G324900 Glycine max HOM05D004336 ORTHO05D005367 2.1e-195 686.0 514 68.7
Nn1g03279 Nelumbo nucifera HOM05D004336 ORTHO05D005367 2.8e-195 685.6 525 64.2
Nn1g03281 Nelumbo nucifera HOM05D004336 ORTHO05D005367 2.8e-195 685.6 525 64.2
Sed0018719 Sechium edule HOM05D004336 ORTHO05D005367 1.8e-194 682.9 504 66.9
vmacro11570 Vaccinium macrocarpon HOM05D004336 ORTHO05D005367 4.0e-194 681.8 517 65.4
Glyma.08G324800 Glycine max HOM05D004336 ORTHO05D005367 1.2e-193 680.2 510 66.5
MELO3C024890.2 Cucumis melo HOM05D004336 ORTHO05D005367 2.0e-193 679.5 504 67.7
SGA_v2.0_scaffold478G52227 Striga asiatica HOM05D004336 ORTHO05D005367 3.4e-193 678.7 516 66.3
Atru.chr2.3600_Atru.chr2.3601 Acer truncatum HOM05D004336 ORTHO05D005367 5.8e-193 677.9 520 64.6
Lj1A883T40 Lonicera japonica HOM05D004336 ORTHO05D005367 2.2e-192 676.0 511 63.4
Glyma.18G085200 Glycine max HOM05D004336 ORTHO05D005367 4.9e-192 674.9 510 66.3
Thhalv10013238m.g Eutrema salsugineum HOM05D004336 ORTHO05D005367 1.1e-191 673.7 531 62.5
BolC3t14066H Brassica oleracea HOM05D004336 ORTHO05D005367 7.1e-191 671.0 529 61.6
MBI19_g06156_MAGBIO Magnolia biondii HOM05D004336 ORTHO05D005367 4.6e-190 668.3 512 64.1
Aqoxy4G01189 Aquilegia oxysepala HOM05D004336 ORTHO05D005367 1.0e-189 667.2 513 63.7
C03p16460 Brassica napus HOM05D004336 ORTHO05D005367 3.0e-189 665.6 526 62.0
Aa31LG3G11440 Aethionema arabicum HOM05D004336 ORTHO05D005367 6.7e-189 664.5 527 62.8
A03p14020 Brassica napus HOM05D004336 ORTHO05D005367 8.7e-189 664.1 529 61.8
AT5G55500 Arabidopsis thaliana HOM05D004336 ORTHO05D005367 1.1e-188 663.7 537 61.1
Lj8A175T74 Lonicera japonica HOM05D004336 ORTHO05D005367 1.9e-188 662.9 482 68.0
Gohir.D01G072200 Gossypium hirsutum HOM05D004336 ORTHO05D005367 2.2e-187 659.4 509 65.2
CARHR268810 Cardamine hirsuta HOM05D004336 ORTHO05D005367 2.8e-187 659.1 546 60.4
BraA03t10701Z Brassica rapa HOM05D004336 ORTHO05D005367 6.3e-187 657.9 529 61.6
AL8G31030 Arabidopsis lyrata HOM05D004336 ORTHO05D005367 1.1e-186 657.1 542 61.1
Eucgr.F00628 Eucalyptus grandis HOM05D004336 ORTHO05D005367 1.4e-186 656.8 535 63.2
Carub.0008s1585 Capsella rubella HOM05D004336 ORTHO05D005367 1.5e-185 653.3 540 61.3
Hund23166 Selenicereus undatus HOM05D004336 ORTHO05D005367 1.5e-185 653.3 510 62.5
Sp6g17380 Schrenkiella parvula HOM05D004336 ORTHO05D005367 4.5e-185 651.7 535 61.1
THA.LOC104811644 Tarenaya hassleriana HOM05D004336 ORTHO05D005367 1.7e-184 649.8 519 60.9
PSO302G0308 Papaver somniferum HOM05D004336 ORTHO05D005367 2.9e-184 649.0 516 61.6
DCAR_016633 Daucus carota HOM05D004336 ORTHO05D005367 1.1e-183 647.1 509 62.3
PSO210G4424 Papaver somniferum HOM05D004336 ORTHO05D005367 1.4e-183 646.7 524 60.7
unitig_8.g4786 Utricularia gibba HOM05D004336 ORTHO05D005367 1.4e-181 640.2 518 62.2
EL10Ac4g07633 Beta vulgaris HOM05D004336 ORTHO05D005367 1.8e-181 639.8 513 60.8
Gohir.A04G010200 Gossypium hirsutum HOM05D004336 ORTHO05D005367 3.3e-180 635.6 526 60.3
BcaC01g06371 Brassica carinata HOM05D004336 ORTHO05D005367 8.2e-179 630.9 522 60.2
Gorai.009G445600 Gossypium raimondii HOM05D004336 ORTHO05D005367 8.2e-179 630.9 522 60.7
Hund01925 Selenicereus undatus HOM05D004336 ORTHO05D005367 8.2e-179 630.9 526 59.7
Ah.04g166390 Amaranthus hybridus HOM05D004336 ORTHO05D005367 2.4e-178 629.4 472 63.6
Gohir.D05G377800 Gossypium hirsutum HOM05D004336 ORTHO05D005367 6.9e-178 627.9 522 60.0
Duzib213G0745 Durio zibethinus HOM05D004336 ORTHO05D005367 2.9e-176 622.5 509 62.1
Ciclev10008121m.g Citrus clementina HOM05D004336 ORTHO05D005367 3.8e-176 622.1 518 60.2
Sc03g0008140 Simmondsia chinensis HOM05D004336 ORTHO05D005367 1.4e-175 620.2 400 71.8
ATR0712G174 Amborella trichopoda HOM05D004336 ORTHO05D005367 2.3e-173 612.8 513 57.3
HPP92_018936 Vanilla planifolia HOM05D004336 ORTHO05D005367 1.1e-170 604.0 451 61.6
Os08g0503800 Oryza sativa ssp. japonica HOM05D004336 ORTHO05D005367 2.2e-168 596.3 450 64.7
ECA236G3940 Erigeron canadensis HOM05D004336 ORTHO05D005367 2.5e-167 592.8 466 62.7
HPP92_018937 Vanilla planifolia HOM05D004336 ORTHO05D005367 3.2e-167 592.4 509 57.4
TPR.G23588 Trifolium pratense HOM05D004336 ORTHO05D005367 4.2e-167 592.0 393 72.5
RcHm_v2.0_Chr5g0041921 Rosa chinensis HOM05D004336 ORTHO05D005367 1.2e-166 590.5 306 91.5
Rhsim06G0225600 Rhododendron simsii HOM05D004336 ORTHO05D005367 5.3e-162 575.1 446 64.8
AUR62040678 Chenopodium quinoa HOM05D004336 ORTHO05D005367 9.7e-156 554.3 382 68.3
SHI26554 Sapria himalayana HOM05D004336 ORTHO05D005367 2.8e-155 552.7 441 59.9
EL10Ac4g07632 Beta vulgaris HOM05D004336 ORTHO05D005367 5.3e-154 548.5 449 59.5
GSVIVG01037759001 Vitis vinifera HOM05D004336 ORTHO05D005367 4.1e-146 522.3 311 79.1
A10p12600 Brassica napus HOM05D004336 ORTHO05D005367 1.0e-144 517.7 424 60.1
Cc05_g14530 Coffea canephora HOM05D004336 ORTHO05D005367 3.8e-144 515.8 311 75.9
QL08p008529 Quercus lobata HOM05D004336 ORTHO05D005367 2.3e-141 506.5 291 79.7
CDE07G1634 Ceratophyllum demersum HOM05D004336 ORTHO05D005367 1.4e-133 480.7 311 70.7
AUR62015931 Chenopodium quinoa HOM05D004336 ORTHO05D005367 1.3e-123 447.6 382 58.4
Ah.06g181060 Amaranthus hybridus HOM05D004336 ORTHO05D005367 3.2e-122 443.0 288 69.8
SMO347G0076 Selaginella moellendorffii HOM05D004336 ORTHO05D005367 7.6e-116 421.8 502 43.6
Mapoly0007s0065 Marchantia polymorpha HOM05D004336 ORTHO05D005367 3.7e-115 419.5 526 40.3
Sabra16G0237900 Salix brachista HOM05D004336 ORTHO05D005367 2.6e-108 396.7 241 77.6
FvH4_3g12320 Fragaria vesca HOM05D004336 ORTHO05D005367 3.8e-107 392.9 200 92.0
QL04p097747 Quercus lobata HOM05D004336 ORTHO05D005367 1.9e-106 390.6 238 77.3
Oeu019622.1 Olea europaea HOM05D004336 ORTHO05D005367 2.4e-106 390.2 241 75.9
Pp3c14_26580 Physcomitrium patens HOM05D004336 ORTHO05D005367 1.5e-103 380.9 400 46.2
RcHm_v2.0_Chr5g0080011 Rosa chinensis HOM05D004336 ORTHO05D005367 1.3e-102 377.9 198 89.9
MD11G1206800 Malus domestica HOM05D004336 ORTHO05D005367 7.3e-95 352.1 232 71.1
BcaB08g35906 Brassica carinata HOM05D004336 ORTHO05D005367 1.3e-91 341.3 523 42.3
BraA10t43362Z Brassica rapa HOM05D004336 ORTHO05D005367 1.4e-82 311.2 339 50.1
Zm00001eb034690 Zea mays HOM05D004336 ORTHO05D005367 1.4e-82 311.2 314 52.2
BcaB01g04318 Brassica carinata HOM05D004336 ORTHO05D005367 3.9e-72 276.6 270 55.9
MD11G1206700 Malus domestica HOM05D004336 ORTHO05D005367 5.7e-71 272.7 166 78.9
QL08p008521 Quercus lobata HOM05D004336 ORTHO05D005367 5.0e-59 233.0 217 60.8
C09p46150 Brassica napus HOM05D004336 ORTHO05D005367 1.2e-57 228.4 241 51.9
BolC9t57481H Brassica oleracea HOM05D004336 ORTHO05D005367 1.2e-57 228.4 241 51.9
C09p46160 Brassica napus HOM05D004336 ORTHO05D005367 7.2e-50 202.6 157 63.7
CBR_g22021 Chara braunii HOM05D000019 ORTHO05D000048 2.7e-49 200.7 434 29.5
A04p06990 Brassica napus HOM05D004336 ORTHO05D005367 2.3e-48 197.6 129 66.7
BraA04t16398Z Brassica rapa HOM05D004336 ORTHO05D005367 2.3e-48 197.6 129 66.7
A03p66870 Brassica napus HOM05D004336 ORTHO05D005367 3.0e-48 197.2 124 69.4
Eucgr.I00174 Eucalyptus grandis HOM05D004336 ORTHO05D005367 1.8e-45 188.0 109 81.7
AagrBONN_evm.TU.Sc2ySwM_228.1049 Anthoceros agrestis HOM05D004336 ORTHO05D005367 7.0e-45 186.0 189 47.6
MSTRG.14468 Avicennia marina HOM05D004336 ORTHO05D005367 5.2e-40 169.9 157 54.1
BraA01t02793Z Brassica rapa HOM05D004336 ORTHO05D004660 1.8e-37 161.4 106 65.1
SHI40288 Sapria himalayana HOM05D004336 ORTHO05D005367 2.7e-36 157.5 267 39.0
SHI22211 Sapria himalayana HOM05D004336 ORTHO05D005367 4.5e-36 156.8 259 39.8
Ah.06g181050 Amaranthus hybridus HOM05D004336 ORTHO05D005367 2.2e-35 154.5 162 46.9
SHI26544 Sapria himalayana HOM05D004336 ORTHO05D005367 1.5e-34 151.8 165 47.9
SEGI_14116 Sequoiadendron giganteum HOM05D004336 ORTHO05D005367 1.0e-32 145.6 283 33.9
TAR627G0477 Trochodendron aralioides HOM05D000054 ORTHO05D000171 5.2e-32 143.3 98 73.5
SHI48138 Sapria himalayana HOM05D004336 ORTHO05D005367 1.3e-30 138.7 267 38.2
RcHm_v2.0_Chr5g0079391 Rosa chinensis HOM05D004336 ORTHO05D005367 2.2e-30 137.9 105 68.6
BcaC04g20358 Brassica carinata HOM05D003513 ORTHO05D004660 3.5e-28 130.6 76 71.1
BolC9t57326H Brassica oleracea HOM05D004336 ORTHO05D005367 3.5e-28 130.6 76 71.1
CDE07G0680 Ceratophyllum demersum HOM05D004336 ORTHO05D005367 6.6e-27 126.3 165 41.8
AL8G29720 Arabidopsis lyrata HOM05D004336 ORTHO05D005367 2.1e-25 121.3 98 59.2
BcaB05g23098 Brassica carinata HOM05D004336 ORTHO05D005367 1.0e-24 119.0 85 61.2
BcaB01g04317 Brassica carinata HOM05D004336 ORTHO05D005367 6.2e-17 93.2 73 63.0
HanXRQChr04g0109771 Helianthus annuus HOM05D004336 ORTHO05D005367 8.9e-16 89.4 87 49.4
A03p61430 Brassica napus HOM05D003513 ORTHO05D004660 1.5e-15 88.6 59 64.4
AagrBONN_evm.TU.Sc2ySwM_228.1050 Anthoceros agrestis HOM05D004336 ORTHO05D005367 9.5e-10 69.3 222 27.0
TAR612G0001 Trochodendron aralioides HOM05D000054 ORTHO05D000171 3.1e-08 64.3 34 94.1
Eucgr.F00781 Eucalyptus grandis HOM05D004336 ORTHO05D192954 4.9e-06 57.0 135 34.8


User provided reference genes

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