Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_3g25980 Fragaria vesca HOM05D006311 ORTHO05D007732 1.6e-101 372.9 198 100.0
FAN11G0814 Fragaria x ananassa HOM05D006311 ORTHO05D007732 1.6e-101 372.9 198 100.0
FAN25G1023 Fragaria x ananassa HOM05D006311 ORTHO05D007732 3.1e-97 358.6 198 98.0
FAN21G2836 Fragaria x ananassa HOM05D006311 ORTHO05D007732 8.9e-97 357.1 198 96.5
FAN16G2986 Fragaria x ananassa HOM05D006311 ORTHO05D007732 7.1e-94 347.4 198 94.4
RcHm_v2.0_Chr5g0047271 Rosa chinensis HOM05D006311 ORTHO05D007732 8.9e-89 330.5 202 89.6
MD11G1172600 Malus domestica HOM05D006311 ORTHO05D007732 2.2e-71 272.7 197 76.6
Dinv05953 Davidia involucrata HOM05D006311 ORTHO05D007732 1.3e-66 256.9 201 75.1
Lj3g0006801 Lotus japonicus HOM05D006311 ORTHO05D007732 5.3e-65 251.5 198 72.7
Cfa009969 Carpinus fangiana HOM05D006311 ORTHO05D007732 6.9e-65 251.1 199 74.9
Glyma.12G093300 Glycine max HOM05D006311 ORTHO05D007732 6.9e-65 251.1 198 72.2
Medtr4g052010 Medicago truncatula HOM05D006311 ORTHO05D007732 5.8e-64 248.1 198 72.2
QL01p011364 Quercus lobata HOM05D006311 ORTHO05D007732 7.6e-64 247.7 197 75.1
Atru.chr3.3143 Acer truncatum HOM05D006311 ORTHO05D007732 1.3e-63 246.9 188 76.1
CiPaw.13G131700 Carya illinoinensis HOM05D006311 ORTHO05D007732 1.3e-63 246.9 203 73.9
Glyma.11G180200 Glycine max HOM05D006311 ORTHO05D007732 2.2e-63 246.1 199 71.4
Cpa.g.sc195.39 Carica papaya HOM05D006311 ORTHO05D007732 6.5e-63 244.6 198 72.7
QL01p011627 Quercus lobata HOM05D006311 ORTHO05D007732 2.5e-62 242.7 200 73.0
Sabra09G0126500 Salix brachista HOM05D006311 ORTHO05D007732 2.5e-62 242.7 187 73.3
TWI31G0202 Tripterygium wilfordii HOM05D006311 ORTHO05D007732 2.5e-62 242.7 195 73.3
VMungo1127G2206 Vigna mungo HOM05D006311 ORTHO05D007732 4.2e-62 241.9 199 70.4
ClCG02G022370 Citrullus lanatus HOM05D006311 ORTHO05D007732 9.3e-62 240.7 158 84.8
Actinidia07269 Actinidia chinensis HOM05D006311 ORTHO05D007732 1.2e-61 240.4 165 80.6
CsaV3_6G038500 Cucumis sativus L. HOM05D006311 ORTHO05D007732 1.6e-61 240.0 159 83.0
MELO3C014513.2 Cucumis melo HOM05D006311 ORTHO05D007732 2.1e-61 239.6 159 82.4
Rhsim01G0202100 Rhododendron simsii HOM05D006311 ORTHO05D007732 2.1e-61 239.6 203 70.9
THA.LOC104826442 Tarenaya hassleriana HOM05D006311 ORTHO05D007732 2.1e-61 239.6 200 69.5
Thecc.09G276000 Theobroma cacao HOM05D006311 ORTHO05D007732 2.1e-61 239.6 198 70.7
Cc01_g08620 Coffea canephora HOM05D006311 ORTHO05D007732 2.7e-61 239.2 171 78.9
CSS0008256 Camellia sinensis var. sinensis HOM05D006311 ORTHO05D007732 4.6e-61 238.4 161 80.1
CSS0012591 Camellia sinensis var. sinensis HOM05D006311 ORTHO05D007732 4.6e-61 238.4 161 80.1
Oeu048845.1 Olea europaea HOM05D006311 ORTHO05D007732 6.0e-61 238.0 203 69.0
Sc21g0006890 Simmondsia chinensis HOM05D006311 ORTHO05D007732 6.0e-61 238.0 187 70.1
GSVIVG01036060001 Vitis vinifera HOM05D006311 ORTHO05D007732 6.0e-61 238.0 191 73.8
Lalb_Chr01g0004961 Lupinus albus HOM05D006311 ORTHO05D007732 7.9e-61 237.7 198 70.2
Ciclev10029330m.g Citrus clementina HOM05D006311 ORTHO05D007732 1.3e-60 236.9 199 71.4
Phvul.011G097600 Phaseolus vulgaris HOM05D006311 ORTHO05D007732 1.3e-60 236.9 199 68.8
TPR.G4615 Trifolium pratense HOM05D006311 ORTHO05D007732 1.3e-60 236.9 197 71.1
arahy.Tifrunner.gnm1.ann1.INBK63 Arachis hypogaea HOM05D006311 ORTHO05D007732 1.8e-60 236.5 198 70.2
Duzib150G1639 Durio zibethinus HOM05D006311 ORTHO05D007732 2.3e-60 236.1 148 85.8
Psat7g187040 Pisum sativum HOM05D006311 ORTHO05D007732 3.0e-60 235.7 198 68.7
arahy.Tifrunner.gnm1.ann1.HB0RZJ Arachis hypogaea HOM05D006311 ORTHO05D007732 3.9e-60 235.3 198 69.7
Migut.D02415 Erythranthe guttata HOM05D006311 ORTHO05D007732 6.7e-60 234.6 164 79.3
Gohir.A09G097700 Gossypium hirsutum HOM05D006311 ORTHO05D007732 1.1e-59 233.8 199 67.8
Gorai.006G114200 Gossypium raimondii HOM05D006311 ORTHO05D007732 1.1e-59 233.8 199 67.8
Prupe.6G139600 Prunus persica HOM05D006311 ORTHO05D007732 1.5e-59 233.4 199 69.3
SGA_v2.0_scaffold7G03983 Striga asiatica HOM05D006311 ORTHO05D007732 1.9e-59 233.0 196 70.9
Sp4g10100 Schrenkiella parvula HOM05D006311 ORTHO05D007732 3.3e-59 232.3 199 67.3
Potri.009G161800 Populus trichocarpa HOM05D006311 ORTHO05D007732 4.3e-59 231.9 202 67.8
Sed0028181 Sechium edule HOM05D006311 ORTHO05D007732 5.7e-59 231.5 160 80.6
Gohir.D09G097500 Gossypium hirsutum HOM05D006311 ORTHO05D007732 7.4e-59 231.1 199 67.3
Nitab4.5_0000893g0010 Nicotiana tabacum HOM05D006311 ORTHO05D007732 1.6e-58 229.9 160 80.0
vmacro14327 Vaccinium macrocarpon HOM05D006311 ORTHO05D007732 2.8e-58 229.2 207 66.7
PGR119G0707 Punica granatum HOM05D006311 ORTHO05D007732 4.8e-58 228.4 189 68.8
TAR623G0571 Trochodendron aralioides HOM05D006311 ORTHO05D007732 4.8e-58 228.4 199 65.8
Aa31LG5G8700 Aethionema arabicum HOM05D006311 ORTHO05D007732 6.3e-58 228.0 198 68.2
BcaB01g03062 Brassica carinata HOM05D006311 ORTHO05D007732 6.3e-58 228.0 200 66.0
BcaB01g03063 Brassica carinata HOM05D006311 ORTHO05D007732 6.3e-58 228.0 200 66.0
AUR62001536 Chenopodium quinoa HOM05D006311 ORTHO05D007732 1.1e-57 227.3 174 73.6
Eucgr.J00538 Eucalyptus grandis HOM05D006311 ORTHO05D007732 1.1e-57 227.3 194 68.6
Nitab4.5_0001135g0160 Nicotiana tabacum HOM05D006311 ORTHO05D007732 2.4e-57 226.1 191 69.6
COL.COLO4_22654 Corchorus olitorius HOM05D006311 ORTHO05D007732 3.1e-57 225.7 190 68.4
Lalb_Chr03g0028331 Lupinus albus HOM05D006311 ORTHO05D007732 3.1e-57 225.7 185 68.6
Nn2g14263 Nelumbo nucifera HOM05D006311 ORTHO05D007732 3.1e-57 225.7 206 68.0
MSTRG.21022 Avicennia marina HOM05D006311 ORTHO05D007732 5.3e-57 224.9 204 66.7
CAN.G745.31 Capsicum annuum HOM05D006311 ORTHO05D007732 6.9e-57 224.6 162 78.4
Ca_29924_v3 Cicer arietinum L. HOM05D006311 ORTHO05D007732 6.9e-57 224.6 198 67.2
Peaxi162Scf00224g00818 Petunia axillaris HOM05D006311 ORTHO05D007732 6.9e-57 224.6 156 78.8
PGSC0003DMG400019619 Solanum tuberosum HOM05D006311 ORTHO05D007732 6.9e-57 224.6 168 74.4
CARHR119830 Cardamine hirsuta HOM05D006311 ORTHO05D007732 9.0e-57 224.2 200 67.5
Sopen11g027510 Solanum pennellii HOM05D006311 ORTHO05D007732 2.6e-56 222.6 166 74.7
unitig_0.g1470 Utricularia gibba HOM05D006311 ORTHO05D007732 3.4e-56 222.2 155 78.7
DCAR_010317 Daucus carota HOM05D006311 ORTHO05D007732 4.5e-56 221.9 189 65.6
Carub.0004s0790 Capsella rubella HOM05D006311 ORTHO05D007732 7.6e-56 221.1 197 67.0
Solyc11g068790.2 Solanum lycopersicum HOM05D006311 ORTHO05D007732 1.3e-55 220.3 162 75.9
MSTRG.18783 Avicennia marina HOM05D006311 ORTHO05D007732 1.7e-55 219.9 190 68.9
BcaB06g28142 Brassica carinata HOM05D006311 ORTHO05D007732 1.7e-55 219.9 199 65.3
A04p20870 Brassica napus HOM05D006311 ORTHO05D007732 5.0e-55 218.4 200 64.5
AUR62020246 Chenopodium quinoa HOM05D006311 ORTHO05D007732 5.0e-55 218.4 174 71.3
HanXRQChr14g0433141 Helianthus annuus HOM05D006311 ORTHO05D007732 8.4e-55 217.6 160 75.0
Manes.11G165200 Manihot esculenta HOM05D006311 ORTHO05D007732 8.4e-55 217.6 170 74.7
C04p56680 Brassica napus HOM05D006311 ORTHO05D007732 1.4e-54 216.9 199 64.3
BolC4t27200H Brassica oleracea HOM05D006311 ORTHO05D007732 1.4e-54 216.9 199 64.3
AL4G21210 Arabidopsis lyrata HOM05D006311 ORTHO05D007732 1.9e-54 216.5 209 64.1
Ca_19458_v3 Cicer arietinum L. HOM05D006311 ORTHO05D007732 1.9e-54 216.5 168 72.6
MBI17_g18935_MAGBIO Magnolia biondii HOM05D006311 ORTHO05D007732 4.2e-54 215.3 161 75.2
SalBow6G1677 Salvia bowleyana HOM05D006311 ORTHO05D007732 4.2e-54 215.3 205 66.3
Lsat_1_v5_gn_2_35940 Lactuca sativa HOM05D006311 ORTHO05D007732 5.5e-54 214.9 155 76.8
CANSAT54G0913 Cannabis sativa HOM05D006311 ORTHO05D007732 9.3e-54 214.2 211 64.5
BolC4t27194H Brassica oleracea HOM05D006311 ORTHO05D007732 1.6e-53 213.4 196 63.8
Aqoxy4G02682 Aquilegia oxysepala HOM05D006311 ORTHO05D007732 2.7e-53 212.6 180 66.1
EL10Ac7g16320 Beta vulgaris HOM05D006311 ORTHO05D007732 2.7e-53 212.6 153 76.5
BcaB06g28139 Brassica carinata HOM05D006311 ORTHO05D007732 4.6e-53 211.8 158 74.7
PSO384G4643 Papaver somniferum HOM05D006311 ORTHO05D007732 4.6e-53 211.8 185 68.1
PSO339G0926 Papaver somniferum HOM05D006311 ORTHO05D007732 6.1e-53 211.5 153 76.5
Thhalv10002100m.g Eutrema salsugineum HOM05D006311 ORTHO05D007732 1.0e-52 210.7 203 63.1
AT2G27290 Arabidopsis thaliana HOM05D006311 ORTHO05D007732 1.8e-52 209.9 171 70.8
BraA04t17659Z Brassica rapa HOM05D001305 ORTHO05D007732 4.3e-51 205.3 198 63.1
ECA238G1364 Erigeron canadensis HOM05D006311 ORTHO05D007732 9.7e-51 204.1 132 81.1
Hund20941 Selenicereus undatus HOM05D006311 ORTHO05D007732 4.1e-49 198.7 183 63.4
HPP92_023073 Vanilla planifolia HOM05D006311 ORTHO05D007732 5.9e-48 194.9 152 72.4
Os04g0416000 Oryza sativa ssp. japonica HOM05D006311 ORTHO05D007732 1.1e-46 190.7 138 73.2
SEGI_25108 Sequoiadendron giganteum HOM05D006311 ORTHO05D007732 7.2e-46 188.0 135 69.6
Mapoly0006s0182 Marchantia polymorpha HOM05D006311 ORTHO05D007732 1.4e-44 183.7 124 75.0
CDE02G3359 Ceratophyllum demersum HOM05D006311 ORTHO05D007732 6.7e-44 181.4 119 79.8
Lj1A261G25 Lonicera japonica HOM05D006311 ORTHO05D007732 6.7e-44 181.4 118 85.6
ATR0772G022 Amborella trichopoda HOM05D006311 ORTHO05D007732 4.3e-43 178.7 199 58.8
Haze_23330 Corylus avellana HOM05D006311 ORTHO05D007732 9.7e-43 177.6 120 80.8
Pp3c14_19090 Physcomitrium patens HOM05D006311 ORTHO05D007732 1.3e-42 177.2 149 65.1
CBR_g30935 Chara braunii HOM05D006311 ORTHO05D007732 2.2e-42 176.4 163 58.9
MD03G1152600 Malus domestica HOM05D006311 ORTHO05D007732 3.7e-42 175.6 108 87.0
SMO146G0331 Selaginella moellendorffii HOM05D006311 ORTHO05D007732 4.8e-42 175.3 124 74.2
SGA_v2.0_scaffold114G31957 Striga asiatica HOM05D006311 ORTHO05D007732 4.1e-41 172.2 117 78.6
AagrBONN_evm.TU.Sc2ySwM_117.22 Anthoceros agrestis HOM05D006311 ORTHO05D007732 1.4e-36 157.1 170 52.4
MCO12G429 Micromonas commoda HOM05D006311 ORTHO05D007732 1.8e-36 156.8 135 60.0
BcaC02g08251 Brassica carinata HOM05D006311 ORTHO05D007732 1.6e-32 143.7 158 58.2
Cre12.g485850 Chlamydomonas reinhardtii HOM05D006311 ORTHO05D007732 2.6e-32 142.9 135 55.6
PRCOL_00001321 Prasinoderma coloniale HOM05D006311 ORTHO05D007732 3.5e-32 142.5 137 59.1
Gohir.D07G115550 Gossypium hirsutum HOM05D006311 ORTHO05D007732 1.5e-30 137.1 87 85.1
Gohir.A07G112050 Gossypium hirsutum HOM05D006311 ORTHO05D007732 1.9e-30 136.7 97 81.4
Gorai.001G123800 Gossypium raimondii HOM05D006311 ORTHO05D007732 5.5e-30 135.2 87 83.9
Actinidia24237 Actinidia chinensis HOM05D006311 ORTHO05D007732 2.3e-28 129.8 139 61.9
BcaC02g08253 Brassica carinata HOM05D006311 ORTHO05D007732 3.0e-28 129.4 156 52.6
BraA04t17657Z Brassica rapa HOM05D006311 ORTHO05D007732 2.4e-25 119.8 86 76.7
Oeu009055.1 Olea europaea HOM05D000182 ORTHO05D000112 1.5e-22 110.5 92 67.4
A04p20840 Brassica napus HOM05D006311 ORTHO05D007732 2.5e-22 109.8 82 75.6
Zm00001eb422070 Zea mays HOM05D006311 ORTHO05D007732 8.0e-21 104.8 125 53.6
CDE08G1250 Ceratophyllum demersum HOM05D006311 ORTHO05D007732 3.8e-15 85.9 121 45.5
Mapoly0036s0025 Marchantia polymorpha HOM05D006047 ORTHO05D007353 3.5e-08 62.8 105 39.0


User provided reference genes

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