Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN11G0798 Fragaria x ananassa HOM05D003577 ORTHO05D045731 2.1e-146 522.3 265 100.0
FvH4_3g30630 Fragaria vesca HOM05D003577 ORTHO05D045731 4.3e-70 268.9 139 98.6
Gorai.008G238000 Gossypium raimondii HOM05D003577 ORTHO05D004663 1.5e-35 154.1 201 43.8
Prupe.1G339800 Prunus persica HOM05D003577 ORTHO05D004663 2.6e-35 153.3 202 44.1
Potri.001G122400 Populus trichocarpa HOM05D003577 ORTHO05D004663 5.8e-35 152.1 201 45.8
Gohir.D12G222000 Gossypium hirsutum HOM05D003577 ORTHO05D004663 7.6e-35 151.8 202 43.6
CiPaw.12G108500 Carya illinoinensis HOM05D003577 ORTHO05D004663 1.0e-34 151.4 202 44.1
Gohir.A12G219850 Gossypium hirsutum HOM05D003577 ORTHO05D004663 1.7e-34 150.6 202 43.6
Sabra01G0094200 Salix brachista HOM05D003577 ORTHO05D004663 1.7e-34 150.6 200 44.0
QL12p012793 Quercus lobata HOM05D003577 ORTHO05D004663 2.2e-34 150.2 202 42.6
QL12p012756 Quercus lobata HOM05D003577 ORTHO05D004663 3.8e-34 149.4 202 43.6
Thecc.03G254200 Theobroma cacao HOM05D003577 ORTHO05D004663 3.8e-34 149.4 202 42.6
Duzib084G0825 Durio zibethinus HOM05D003577 ORTHO05D004663 4.9e-34 149.1 202 42.6
Duzib205G2002 Durio zibethinus HOM05D003577 ORTHO05D004663 4.9e-34 149.1 202 42.1
MD16G1010900 Malus domestica HOM05D003577 ORTHO05D004663 6.5e-34 148.7 202 42.6
Nn6g34005 Nelumbo nucifera HOM05D003577 ORTHO05D004663 6.5e-34 148.7 202 42.1
Gorai.003G170500 Gossypium raimondii HOM05D003577 ORTHO05D004663 8.4e-34 148.3 202 43.1
Ciclev10020910m.g Citrus clementina HOM05D003577 ORTHO05D004663 1.1e-33 147.9 202 43.1
Actinidia02117 Actinidia chinensis HOM05D003577 ORTHO05D004663 1.4e-33 147.5 202 43.1
RcHm_v2.0_Chr4g0445541 Rosa chinensis HOM05D003577 ORTHO05D004663 1.4e-33 147.5 202 43.1
Atru.chr9.1341 Acer truncatum HOM05D003577 ORTHO05D004663 1.9e-33 147.1 202 43.1
Atru.chr9.1342 Acer truncatum HOM05D003577 ORTHO05D004663 1.9e-33 147.1 202 43.1
Gohir.D08G190300 Gossypium hirsutum HOM05D003577 ORTHO05D004663 1.9e-33 147.1 202 42.1
Gorai.009G297700 Gossypium raimondii HOM05D003577 ORTHO05D004663 1.9e-33 147.1 202 42.1
Phvul.003G219400 Phaseolus vulgaris HOM05D003577 ORTHO05D004663 1.9e-33 147.1 206 42.2
TAR263G0002 Trochodendron aralioides HOM05D003577 ORTHO05D004663 1.9e-33 147.1 202 42.1
Gohir.A03G008900 Gossypium hirsutum HOM05D003577 ORTHO05D004663 2.5e-33 146.7 202 42.6
Gohir.D03G162000 Gossypium hirsutum HOM05D003577 ORTHO05D004663 2.5e-33 146.7 202 42.6
Nitab4.5_0006367g0010 Nicotiana tabacum HOM05D003577 ORTHO05D004663 2.5e-33 146.7 202 42.6
arahy.Tifrunner.gnm1.ann1.5G087V Arachis hypogaea HOM05D003577 ORTHO05D004663 3.2e-33 146.4 201 41.8
Glyma.05G058100 Glycine max HOM05D003577 ORTHO05D004663 3.2e-33 146.4 201 41.3
Manes.02G038200 Manihot esculenta HOM05D003577 ORTHO05D004663 3.2e-33 146.4 202 42.1
Sc22g0000780 Simmondsia chinensis HOM05D003577 ORTHO05D004663 3.2e-33 146.4 220 40.5
arahy.Tifrunner.gnm1.ann1.BE9V1M Arachis hypogaea HOM05D003577 ORTHO05D004663 4.2e-33 146.0 201 41.8
CANSAT21G0247 Cannabis sativa HOM05D003577 ORTHO05D004663 4.2e-33 146.0 202 41.6
MELO3C005539.2 Cucumis melo HOM05D003577 ORTHO05D004663 5.5e-33 145.6 207 40.1
Manes.01G079100 Manihot esculenta HOM05D003577 ORTHO05D004663 5.5e-33 145.6 202 42.1
CAN.G1218.7 Capsicum annuum HOM05D003577 ORTHO05D004663 7.1e-33 145.2 202 42.6
Sed0005868 Sechium edule HOM05D003577 ORTHO05D004663 7.1e-33 145.2 207 40.1
Solyc08g007420.3 Solanum lycopersicum HOM05D003577 ORTHO05D004663 7.1e-33 145.2 202 42.6
TAR375G0076 Trochodendron aralioides HOM05D003577 ORTHO05D004663 7.1e-33 145.2 202 42.1
Actinidia14440 Actinidia chinensis HOM05D003577 ORTHO05D004663 9.3e-33 144.8 207 42.0
ClCG01G003970 Citrullus lanatus HOM05D003577 ORTHO05D004663 9.3e-33 144.8 207 39.1
HanXRQChr17g0549811 Helianthus annuus HOM05D003577 ORTHO05D004663 9.3e-33 144.8 207 42.0
Peaxi162Scf00102g01136 Petunia axillaris HOM05D003577 ORTHO05D004663 9.3e-33 144.8 202 42.1
RcHm_v2.0_Chr7g0202841 Rosa chinensis HOM05D003577 ORTHO05D004663 9.3e-33 144.8 202 42.1
Solyc08g078850.3 Solanum lycopersicum HOM05D003577 ORTHO05D004663 9.3e-33 144.8 202 42.6
PGSC0003DMG400004800 Solanum tuberosum HOM05D003577 ORTHO05D004663 9.3e-33 144.8 202 42.6
TWI15G1033 Tripterygium wilfordii HOM05D003577 ORTHO05D004663 9.3e-33 144.8 202 41.6
Haze_07878 Corylus avellana HOM05D003577 ORTHO05D004663 1.2e-32 144.4 202 41.6
FAN08G3105 Fragaria x ananassa HOM05D003577 ORTHO05D004663 1.2e-32 144.4 202 42.1
Prupe.5G072700 Prunus persica HOM05D003577 ORTHO05D004663 1.2e-32 144.4 207 41.5
QL12p012789 Quercus lobata HOM05D003577 ORTHO05D004663 1.2e-32 144.4 202 42.1
Sopen08g003370 Solanum pennellii HOM05D003577 ORTHO05D004663 1.2e-32 144.4 202 42.6
Sopen08g027320 Solanum pennellii HOM05D003577 ORTHO05D004663 1.2e-32 144.4 202 42.6
vmacro14092 Vaccinium macrocarpon HOM05D003577 ORTHO05D004663 1.2e-32 144.4 201 43.3
GSVIVG01001303001 Vitis vinifera HOM05D003577 ORTHO05D004663 1.2e-32 144.4 202 42.1
Gohir.A08G171900 Gossypium hirsutum HOM05D003577 ORTHO05D004663 1.6e-32 144.1 202 41.6
AL7G37440 Arabidopsis lyrata HOM05D003577 ORTHO05D004663 2.1e-32 143.7 202 41.6
CSS0016480 Camellia sinensis var. sinensis HOM05D003577 ORTHO05D004663 2.1e-32 143.7 202 42.1
CSS0037300 Camellia sinensis var. sinensis HOM05D003577 ORTHO05D004663 2.1e-32 143.7 202 42.1
CSS0040266 Camellia sinensis var. sinensis HOM05D003577 ORTHO05D004663 2.7e-32 143.3 201 41.3
Cfa012750 Carpinus fangiana HOM05D003577 ORTHO05D004663 2.7e-32 143.3 202 41.1
PGSC0003DMG400012478 Solanum tuberosum HOM05D003577 ORTHO05D004663 2.7e-32 143.3 202 42.1
Cpa.g.sc29.108 Carica papaya HOM05D003577 ORTHO05D004663 3.5e-32 142.9 201 41.3
Nitab4.5_0000312g0260 Nicotiana tabacum HOM05D003577 ORTHO05D004663 3.5e-32 142.9 202 41.6
CDE12G0646 Ceratophyllum demersum HOM05D003577 ORTHO05D004663 4.6e-32 142.5 208 40.4
Medtr5g012390 Medicago truncatula HOM05D003577 ORTHO05D004663 4.6e-32 142.5 202 40.6
TWI15G0060 Tripterygium wilfordii HOM05D003577 ORTHO05D004663 4.6e-32 142.5 202 41.1
VMungo1215G0981 Vigna mungo HOM05D003577 ORTHO05D004663 4.6e-32 142.5 201 41.3
CsaV3_5G004150 Cucumis sativus L. HOM05D003577 ORTHO05D004663 6.0e-32 142.1 207 39.1
FAN04G1063 Fragaria x ananassa HOM05D003577 ORTHO05D004663 6.0e-32 142.1 202 41.6
Potri.003G111201 Populus trichocarpa HOM05D003577 ORTHO05D004663 6.0e-32 142.1 202 42.1
Hund11614 Selenicereus undatus HOM05D003577 ORTHO05D004663 6.0e-32 142.1 202 41.6
TPR.G25882 Trifolium pratense HOM05D003577 ORTHO05D004663 6.0e-32 142.1 202 40.1
VMungo0251G3133 Vigna mungo HOM05D003577 ORTHO05D004663 6.0e-32 142.1 201 41.3
BcaC09g50459 Brassica carinata HOM05D003577 ORTHO05D004663 7.9e-32 141.7 202 41.1
A01p20100 Brassica napus HOM05D003577 ORTHO05D004663 7.9e-32 141.7 202 41.1
C01p25250 Brassica napus HOM05D003577 ORTHO05D004663 7.9e-32 141.7 202 41.1
BolC1t02475H Brassica oleracea HOM05D003577 ORTHO05D004663 7.9e-32 141.7 202 41.1
BraA01t01934Z Brassica rapa HOM05D003577 ORTHO05D004663 7.9e-32 141.7 202 41.1
Ca_24570_v3 Cicer arietinum L. HOM05D003577 ORTHO05D004663 7.9e-32 141.7 202 40.1
Hma1.2p1_0753F.1_g212980 Hydrangea macrophylla HOM05D003577 ORTHO05D004663 7.9e-32 141.7 201 41.3
Aqoxy5G03916 Aquilegia oxysepala HOM05D003577 ORTHO05D004663 1.0e-31 141.4 201 42.3
AT4G17260 Arabidopsis thaliana HOM05D003577 ORTHO05D004663 1.0e-31 141.4 202 42.1
FvH4_5g00090 Fragaria vesca HOM05D003577 ORTHO05D004663 1.0e-31 141.4 202 42.1
FAN18G1797 Fragaria x ananassa HOM05D003577 ORTHO05D004663 1.0e-31 141.4 202 42.1
Glyma.01G210400 Glycine max HOM05D003577 ORTHO05D004663 1.0e-31 141.4 207 40.6
Migut.A00960 Erythranthe guttata HOM05D003577 ORTHO05D004663 1.3e-31 141.0 202 41.1
Peaxi162Scf00002g01511 Petunia axillaris HOM05D003577 ORTHO05D004663 1.3e-31 141.0 202 41.6
RcHm_v2.0_Chr4g0406091 Rosa chinensis HOM05D003577 ORTHO05D004663 1.3e-31 141.0 203 42.9
unitig_0.g1064 Utricularia gibba HOM05D003577 ORTHO05D004663 1.3e-31 141.0 202 40.6
BcaC06g33546 Brassica carinata HOM05D003577 ORTHO05D004663 1.8e-31 140.6 202 41.1
BcaNung03469 Brassica carinata HOM05D003577 ORTHO05D004663 1.8e-31 140.6 202 40.6
BolC7t45376H Brassica oleracea HOM05D003577 ORTHO05D004663 1.8e-31 140.6 202 41.1
BraA03t14127Z Brassica rapa HOM05D003577 ORTHO05D004663 1.8e-31 140.6 202 40.6
CiPaw.11G152300 Carya illinoinensis HOM05D003577 ORTHO05D004663 1.8e-31 140.6 202 41.6
Eucgr.E00444 Eucalyptus grandis HOM05D003577 ORTHO05D004663 1.8e-31 140.6 202 40.6
MBI04_g03669_MAGBIO Magnolia biondii HOM05D003577 ORTHO05D004663 1.8e-31 140.6 202 41.1
Sp7g16910 Schrenkiella parvula HOM05D003577 ORTHO05D004663 1.8e-31 140.6 202 40.1
Nn6g34004 Nelumbo nucifera HOM05D003577 ORTHO05D004663 2.3e-31 140.2 202 40.1
Psat6g166680 Pisum sativum HOM05D003577 ORTHO05D004663 2.3e-31 140.2 202 39.6
SalBow6G4668 Salvia bowleyana HOM05D003577 ORTHO05D004663 2.3e-31 140.2 202 41.1
Carub.0007s2413 Capsella rubella HOM05D003577 ORTHO05D004663 3.0e-31 139.8 202 40.6
Cc08_g12710 Coffea canephora HOM05D003577 ORTHO05D004663 3.0e-31 139.8 202 41.6
Eucgr.D02046 Eucalyptus grandis HOM05D003577 ORTHO05D004663 3.0e-31 139.8 202 40.1
Lj2C215G3 Lonicera japonica HOM05D003577 ORTHO05D004663 3.0e-31 139.8 202 40.6
Phvul.002G062000 Phaseolus vulgaris HOM05D003577 ORTHO05D004663 3.0e-31 139.8 202 41.6
CARHR223890 Cardamine hirsuta HOM05D003577 ORTHO05D004663 3.9e-31 139.4 202 40.1
Glyma.17G140600 Glycine max HOM05D003577 ORTHO05D004663 3.9e-31 139.4 200 40.5
Lalb_Chr05g0225731 Lupinus albus HOM05D003577 ORTHO05D004663 5.1e-31 139.0 202 39.6
THA.LOC104813333 Tarenaya hassleriana HOM05D003577 ORTHO05D004663 5.1e-31 139.0 202 40.1
EL10Ac5g13048 Beta vulgaris HOM05D003577 ORTHO05D004663 8.7e-31 138.3 202 41.1
BcaNung00105 Brassica carinata HOM05D003577 ORTHO05D004663 8.7e-31 138.3 201 40.3
HanXRQChr13g0396351 Helianthus annuus HOM05D003577 ORTHO05D004663 1.1e-30 137.9 202 40.6
PSO782G2886 Papaver somniferum HOM05D003577 ORTHO05D004663 1.1e-30 137.9 202 39.6
Lsat_1_v5_gn_3_740 Lactuca sativa HOM05D003577 ORTHO05D004663 1.5e-30 137.5 207 40.1
HanXRQChr06g0164341 Helianthus annuus HOM05D003577 ORTHO05D004663 1.9e-30 137.1 202 41.6
Lj2g0000249 Lotus japonicus HOM05D003577 ORTHO05D004663 1.9e-30 137.1 165 47.9
Sabra03G0077100 Salix brachista HOM05D003577 ORTHO05D004663 1.9e-30 137.1 202 42.1
MSTRG.12085 Avicennia marina HOM05D003577 ORTHO05D004663 2.5e-30 136.7 202 40.6
Cc08_g12720 Coffea canephora HOM05D003577 ORTHO05D004663 2.5e-30 136.7 216 39.8
Thhalv10025596m.g Eutrema salsugineum HOM05D003577 ORTHO05D004663 2.5e-30 136.7 202 39.6
CANSAT21G2077 Cannabis sativa HOM05D003577 ORTHO05D004663 4.3e-30 136.0 201 40.3
CAN.G1227.9 Capsicum annuum HOM05D003577 ORTHO05D004663 4.3e-30 136.0 202 40.6
PGR042G0879 Punica granatum HOM05D003577 ORTHO05D004663 4.3e-30 136.0 202 38.6
AUR62039952 Chenopodium quinoa HOM05D003577 ORTHO05D004663 5.7e-30 135.6 202 40.6
DCAR_006822 Daucus carota HOM05D003577 ORTHO05D004663 5.7e-30 135.6 202 39.6
Lj4g0018948 Lotus japonicus HOM05D003577 ORTHO05D004663 5.7e-30 135.6 202 40.1
unitig_0.g1061 Utricularia gibba HOM05D003577 ORTHO05D004663 5.7e-30 135.6 213 38.0
AUR62007499 Chenopodium quinoa HOM05D003577 ORTHO05D004663 7.4e-30 135.2 202 41.1
ECA233G5538 Erigeron canadensis HOM05D003577 ORTHO05D004663 9.6e-30 134.8 202 40.1
Lsat_1_v5_gn_6_3021 Lactuca sativa HOM05D003577 ORTHO05D004663 9.6e-30 134.8 205 39.5
DCAR_027785 Daucus carota HOM05D003577 ORTHO05D004663 1.3e-29 134.4 202 40.6
Thhalv10025435m.g Eutrema salsugineum HOM05D003577 ORTHO05D004663 1.3e-29 134.4 202 38.6
Psat4g070040 Pisum sativum HOM05D003577 ORTHO05D004663 1.3e-29 134.4 203 39.4
Psat4g070120 Pisum sativum HOM05D003577 ORTHO05D004663 1.3e-29 134.4 203 39.9
SGA_v2.0_scaffold146G36158 Striga asiatica HOM05D003577 ORTHO05D004663 1.3e-29 134.4 202 39.1
Ah.12g056680 Amaranthus hybridus HOM05D003577 ORTHO05D004663 1.6e-29 134.0 202 40.6
Dinv39124 Davidia involucrata HOM05D003577 ORTHO05D004663 1.6e-29 134.0 202 39.1
THA.LOC104798465 Tarenaya hassleriana HOM05D003577 ORTHO05D004663 1.6e-29 134.0 200 41.0
Aa31LG6G2900 Aethionema arabicum HOM05D003577 ORTHO05D004663 2.8e-29 133.3 202 39.1
SEGI_01079 Sequoiadendron giganteum HOM05D003577 ORTHO05D004663 3.7e-29 132.9 201 37.8
SalBow6G1855 Salvia bowleyana HOM05D003577 ORTHO05D004663 1.1e-28 131.3 207 39.6
Medtr4g101130 Medicago truncatula HOM05D003577 ORTHO05D004663 1.4e-28 131.0 202 38.1
SEGI_18702 Sequoiadendron giganteum HOM05D003577 ORTHO05D004663 2.4e-28 130.2 203 37.9
Zm00001eb229430 Zea mays HOM05D003577 ORTHO05D004663 2.4e-28 130.2 202 39.6
Ah.02g116790 Amaranthus hybridus HOM05D003577 ORTHO05D004663 1.5e-27 127.5 202 38.1
PGR031G3899 Punica granatum HOM05D003577 ORTHO05D004663 2.6e-27 126.7 202 38.1
Ca_21954_v3 Cicer arietinum L. HOM05D003577 ORTHO05D034586 3.4e-27 126.3 137 47.4
Zm00001eb229440 Zea mays HOM05D003577 ORTHO05D004663 3.4e-27 126.3 211 38.9
Os02g0105400 Oryza sativa ssp. japonica HOM05D003577 ORTHO05D004663 5.8e-27 125.6 202 38.1
TPR.G29019 Trifolium pratense HOM05D003577 ORTHO05D034586 5.8e-27 125.6 137 47.4
Nitab4.5_0012654g0010 Nicotiana tabacum HOM05D003577 ORTHO05D004663 1.0e-26 124.8 137 48.2
SEGI_40617 Sequoiadendron giganteum HOM05D003577 ORTHO05D004663 2.2e-26 123.6 206 35.9
SEGI_41296 Sequoiadendron giganteum HOM05D003577 ORTHO05D004663 3.8e-26 122.9 206 35.4
Pp3c22_12920 Physcomitrium patens HOM05D003577 ORTHO05D004663 1.1e-25 121.3 206 37.4
SEGI_37574 Sequoiadendron giganteum HOM05D003577 ORTHO05D004663 1.4e-25 120.9 206 35.4
PSO063G0544 Papaver somniferum HOM05D003577 ORTHO05D034586 1.9e-25 120.6 137 45.3
Pp3c21_11360 Physcomitrium patens HOM05D003577 ORTHO05D004663 1.9e-25 120.6 206 35.9
ATR0681G358 Amborella trichopoda HOM05D003577 ORTHO05D004663 2.5e-25 120.2 189 37.6
Pp3c18_10120 Physcomitrium patens HOM05D003577 ORTHO05D004663 3.5e-24 116.3 228 34.6
AagrBONN_evm.TU.Sc2ySwM_228.3813 Anthoceros agrestis HOM05D003577 ORTHO05D004663 4.6e-24 115.9 197 35.5
CBR_g24220 Chara braunii HOM05D003577 ORTHO05D004663 1.0e-23 114.8 194 37.1
Os06g0104900 Oryza sativa ssp. japonica HOM05D003577 ORTHO05D004663 1.3e-23 114.4 210 36.7
SMO356G0074 Selaginella moellendorffii HOM05D003577 ORTHO05D004663 1.1e-22 111.3 218 33.0
Mapoly0049s0082 Marchantia polymorpha HOM05D003577 ORTHO05D004663 6.3e-21 105.5 200 36.0
GSVIVG01027640001 Vitis vinifera HOM05D003577 ORTHO05D004663 1.8e-20 104.0 203 34.0
FAN25G2773 Fragaria x ananassa HOM05D003577 ORTHO05D025039 1.9e-17 94.0 122 46.7
SMO116G0389 Selaginella moellendorffii HOM05D003577 ORTHO05D004663 1.9e-17 94.0 227 30.8
FAN21G1864 Fragaria x ananassa HOM05D003577 ORTHO05D204953 2.5e-09 67.0 42 71.4
Nitab4.5_0004059g0040 Nicotiana tabacum HOM05D003577 ORTHO05D004663 4.4e-06 56.2 78 42.3
CAN.G1227.7 Capsicum annuum HOM05D003577 ORTHO05D004663 7.4e-06 55.5 116 31.0


User provided reference genes

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