Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN11G0786 Fragaria x ananassa HOM05D004193 ORTHO05D004862 1.9e-147 526.6 440 100.0
FvH4_3g07430 Fragaria vesca HOM05D004193 ORTHO05D004862 2.2e-143 513.1 414 99.3
FAN21G2979 Fragaria x ananassa HOM05D004193 ORTHO05D004862 1.3e-132 477.2 380 97.1
FAN16G2064 Fragaria x ananassa HOM05D004193 ORTHO05D004862 3.8e-132 475.7 380 96.8
FAN25G3279 Fragaria x ananassa HOM05D004193 ORTHO05D004862 5.5e-131 471.9 380 96.6
RcHm_v2.0_Chr5g0011431 Rosa chinensis HOM05D004193 ORTHO05D004862 5.2e-113 412.1 372 89.0
MD10G1276600 Malus domestica HOM05D004193 ORTHO05D004862 1.7e-111 407.1 441 78.7
CiPaw.09G072000 Carya illinoinensis HOM05D004193 ORTHO05D004862 1.3e-103 380.9 381 78.5
QL05p048361 Quercus lobata HOM05D004193 ORTHO05D004862 2.7e-101 373.2 379 79.2
Cfa000640 Carpinus fangiana HOM05D004193 ORTHO05D004862 7.8e-101 371.7 383 80.4
Haze_06190 Corylus avellana HOM05D004193 ORTHO05D004862 1.3e-100 370.9 383 80.4
ClCG01G023850 Citrullus lanatus HOM05D004193 ORTHO05D004862 2.3e-97 360.1 381 76.1
MELO3C007203.2 Cucumis melo HOM05D004193 ORTHO05D004862 1.3e-95 354.4 385 75.6
CANSAT21G2377 Cannabis sativa HOM05D004193 ORTHO05D004862 2.2e-95 353.6 383 79.9
Sed0000562 Sechium edule HOM05D004193 ORTHO05D004862 3.2e-94 349.7 380 79.5
ClCG03G007510 Citrullus lanatus HOM05D004193 ORTHO05D004862 5.4e-94 349.0 380 76.6
CsaV3_1G033160 Cucumis sativus L. HOM05D004193 ORTHO05D004862 2.7e-93 346.7 380 78.7
MELO3C002671.2 Cucumis melo HOM05D004193 ORTHO05D004862 3.5e-93 346.3 380 78.7
Atru.chr10.1586 Acer truncatum HOM05D004193 ORTHO05D004862 1.7e-92 344.0 380 78.4
Nn1g04504 Nelumbo nucifera HOM05D004193 ORTHO05D004862 3.9e-92 342.8 383 77.0
Sc05g0007000 Simmondsia chinensis HOM05D004193 ORTHO05D004862 6.6e-92 342.0 380 74.7
PGR042G3004 Punica granatum HOM05D004193 ORTHO05D004862 3.3e-91 339.7 379 79.7
Manes.17G058300 Manihot esculenta HOM05D004193 ORTHO05D004862 5.6e-91 339.0 383 76.2
Duzib235G0429 Durio zibethinus HOM05D004193 ORTHO05D004862 1.8e-89 334.0 381 74.8
Sed0009063 Sechium edule HOM05D004193 ORTHO05D004862 4.0e-89 332.8 380 73.2
Sed0018737 Sechium edule HOM05D004193 ORTHO05D004862 4.0e-89 332.8 385 73.5
Cpa.g.sc7.100 Carica papaya HOM05D004193 ORTHO05D004862 6.8e-89 332.0 384 77.1
Eucgr.E02765 Eucalyptus grandis HOM05D004193 ORTHO05D004862 2.0e-88 330.5 349 79.9
Lj4g0003170 Lotus japonicus HOM05D004193 ORTHO05D004862 2.6e-88 330.1 380 75.0
Phvul.006G174100 Phaseolus vulgaris HOM05D004193 ORTHO05D004862 4.4e-88 329.3 379 73.6
Aqoxy1G02001 Aquilegia oxysepala HOM05D004193 ORTHO05D004862 4.9e-87 325.9 378 75.1
Potri.004G059500 Populus trichocarpa HOM05D004193 ORTHO05D004862 1.9e-86 323.9 383 76.5
Lalb_Chr18g0054701 Lupinus albus HOM05D004193 ORTHO05D004862 2.4e-86 323.6 379 73.4
Nn3g21120 Nelumbo nucifera HOM05D004193 ORTHO05D004862 3.2e-86 323.2 382 74.6
TAR626G1977 Trochodendron aralioides HOM05D004193 ORTHO05D004862 4.1e-86 322.8 381 74.3
MSTRG.16163 Avicennia marina HOM05D004193 ORTHO05D004862 7.1e-86 322.0 382 73.3
Peaxi162Scf00734g00053 Petunia axillaris HOM05D004193 ORTHO05D004862 2.7e-85 320.1 378 74.6
Glyma.13G227700 Glycine max HOM05D004193 ORTHO05D004862 6.0e-85 318.9 379 74.1
Glyma.15G084800 Glycine max HOM05D004193 ORTHO05D004862 1.0e-84 318.2 379 74.7
Gohir.D06G138100 Gossypium hirsutum HOM05D004193 ORTHO05D004862 1.0e-84 318.2 401 70.3
Oeu039891.1 Olea europaea HOM05D004193 ORTHO05D004862 1.7e-84 317.4 380 73.4
Duzib160G0263 Durio zibethinus HOM05D004193 ORTHO05D004862 2.3e-84 317.0 382 69.9
Lalb_Chr15g0086241 Lupinus albus HOM05D004193 ORTHO05D004862 3.9e-84 316.2 379 71.8
TWI09G0810 Tripterygium wilfordii HOM05D004193 ORTHO05D004862 5.1e-84 315.8 380 72.4
Medtr2g016620 Medicago truncatula HOM05D004193 ORTHO05D004862 8.6e-84 315.1 399 70.9
Sabra04G0038500 Salix brachista HOM05D004193 ORTHO05D004862 8.6e-84 315.1 383 73.6
Sabra11G0057200 Salix brachista HOM05D004193 ORTHO05D004862 8.6e-84 315.1 383 76.2
Ca_17907_v3 Cicer arietinum L. HOM05D004193 ORTHO05D004862 1.9e-83 313.9 380 71.3
Gorai.010G160400 Gossypium raimondii HOM05D004193 ORTHO05D004862 5.6e-83 312.4 401 69.8
Sabra11G0053600 Salix brachista HOM05D004193 ORTHO05D004862 1.2e-82 311.2 379 76.5
Gohir.A06G132500 Gossypium hirsutum HOM05D004193 ORTHO05D004862 1.6e-82 310.8 382 71.5
Migut.M01015 Erythranthe guttata HOM05D004193 ORTHO05D004862 2.1e-82 310.5 388 70.6
VMungo0540G1249 Vigna mungo HOM05D004193 ORTHO05D004862 2.4e-81 307.0 379 73.1
PGSC0003DMG400026750 Solanum tuberosum HOM05D004193 ORTHO05D004862 3.1e-81 306.6 378 71.4
Dinv12762 Davidia involucrata HOM05D004193 ORTHO05D004862 5.2e-81 305.8 319 79.0
Nitab4.5_0002458g0090 Nicotiana tabacum HOM05D004193 ORTHO05D004862 5.2e-81 305.8 378 70.6
Oeu041745.1 Olea europaea HOM05D004193 ORTHO05D004862 5.2e-81 305.8 398 70.1
Dinv32348 Davidia involucrata HOM05D004193 ORTHO05D004862 8.9e-81 305.1 319 79.6
Gohir.D10G036100 Gossypium hirsutum HOM05D004193 ORTHO05D004862 2.6e-80 303.5 381 74.0
Nitab4.5_0000437g0190 Nicotiana tabacum HOM05D004193 ORTHO05D004862 2.6e-80 303.5 378 74.1
Potri.011G069500 Populus trichocarpa HOM05D004193 ORTHO05D004862 2.6e-80 303.5 383 76.0
Gorai.011G038000 Gossypium raimondii HOM05D004193 ORTHO05D004862 3.4e-80 303.1 381 74.0
Sopen03g002060 Solanum pennellii HOM05D004193 ORTHO05D004862 3.4e-80 303.1 378 71.7
Ca_00456_v3 Cicer arietinum L. HOM05D004193 ORTHO05D004862 9.9e-80 301.6 379 72.3
AUR62027707 Chenopodium quinoa HOM05D004193 ORTHO05D004862 1.7e-79 300.8 414 70.5
Nitab4.5_0000462g0040 Nicotiana tabacum HOM05D004193 ORTHO05D004862 2.2e-79 300.4 378 69.0
CAN.G866.27 Capsicum annuum HOM05D004193 ORTHO05D004862 3.8e-79 299.7 378 69.3
Solyc02g072250.1 Solanum lycopersicum HOM05D004193 ORTHO05D004862 1.4e-78 297.7 378 72.8
Thecc.06G167100 Theobroma cacao HOM05D004193 ORTHO05D004862 1.4e-78 297.7 381 72.7
CsaV3_6G051010 Cucumis sativus L. HOM05D004193 ORTHO05D004862 2.4e-78 297.0 366 74.3
Ah.09g233350 Amaranthus hybridus HOM05D004193 ORTHO05D004862 3.2e-78 296.6 385 73.2
Ciclev10015277m.g Citrus clementina HOM05D004193 ORTHO05D004862 3.2e-78 296.6 380 74.2
Psat7g069000 Pisum sativum HOM05D004193 ORTHO05D004862 9.3e-78 295.0 379 72.3
Duzib192G1038 Durio zibethinus HOM05D004193 ORTHO05D004862 1.0e-76 291.6 381 71.4
SalBow8G4302 Salvia bowleyana HOM05D004193 ORTHO05D004862 1.0e-76 291.6 380 73.2
SGA_v2.0_scaffold1G00068 Striga asiatica HOM05D004193 ORTHO05D004862 1.3e-76 291.2 383 71.8
TPR.G6739 Trifolium pratense HOM05D004193 ORTHO05D004862 2.3e-76 290.4 380 71.1
Lalb_Chr13g0295201 Lupinus albus HOM05D004193 ORTHO05D004862 3.0e-76 290.0 381 71.4
Sopen02g021230 Solanum pennellii HOM05D004193 ORTHO05D004862 5.1e-76 289.3 378 71.4
PSO541G1278 Papaver somniferum HOM05D004193 ORTHO05D004862 6.6e-76 288.9 383 67.9
PSO675G2498 Papaver somniferum HOM05D004193 ORTHO05D004862 8.7e-76 288.5 383 68.4
MSTRG.7422 Avicennia marina HOM05D004193 ORTHO05D004862 1.1e-75 288.1 382 66.2
PGSC0003DMG401028427 Solanum tuberosum HOM05D004193 ORTHO05D004862 1.5e-75 287.7 364 73.6
AUR62039461 Chenopodium quinoa HOM05D004193 ORTHO05D004862 1.9e-75 287.3 379 72.8
HPP92_011510 Vanilla planifolia HOM05D004193 ORTHO05D004862 4.3e-75 286.2 386 67.4
Cc02_g15470 Coffea canephora HOM05D004193 ORTHO05D004862 5.6e-75 285.8 323 74.9
Gohir.A10G035400 Gossypium hirsutum HOM05D004193 ORTHO05D004862 3.6e-74 283.1 353 70.0
Lj6g0022713 Lotus japonicus HOM05D004193 ORTHO05D004862 6.2e-74 282.3 378 67.2
TPR.G4517 Trifolium pratense HOM05D004193 ORTHO05D004862 6.2e-74 282.3 327 74.3
arahy.Tifrunner.gnm1.ann1.G2PW3U Arachis hypogaea HOM05D004193 ORTHO05D004862 1.8e-73 280.8 366 68.0
arahy.Tifrunner.gnm1.ann1.PWB2GB Arachis hypogaea HOM05D004193 ORTHO05D004862 5.3e-73 279.3 367 68.1
AL7G35490 Arabidopsis lyrata HOM05D004193 ORTHO05D004862 5.8e-72 275.8 392 69.1
Medtr8g086590 Medicago truncatula HOM05D004193 ORTHO05D004862 9.9e-72 275.0 379 69.9
Gohir.A05G154000 Gossypium hirsutum HOM05D004193 ORTHO05D004862 1.3e-71 274.6 379 68.3
AT4G18760 Arabidopsis thaliana HOM05D004193 ORTHO05D004862 2.2e-71 273.9 392 69.4
DCAR_003990 Daucus carota HOM05D004193 ORTHO05D004862 8.4e-71 271.9 379 71.2
BcaB04g18496 Brassica carinata HOM05D004193 ORTHO05D004862 1.9e-70 270.8 391 65.5
CARHR225610 Cardamine hirsuta HOM05D004193 ORTHO05D004862 1.9e-70 270.8 390 66.9
BcaC01g00565 Brassica carinata HOM05D004193 ORTHO05D004862 1.6e-69 267.7 391 66.8
C03p81450 Brassica napus HOM05D004193 ORTHO05D004862 1.6e-69 267.7 391 66.8
BolC3t20416H Brassica oleracea HOM05D004193 ORTHO05D004862 1.6e-69 267.7 391 66.8
Thhalv10025247m.g Eutrema salsugineum HOM05D004193 ORTHO05D004862 1.6e-69 267.7 391 66.5
THA.LOC104798441 Tarenaya hassleriana HOM05D004193 ORTHO05D004862 1.6e-69 267.7 407 68.8
Gohir.D05G156801 Gossypium hirsutum HOM05D004193 ORTHO05D004862 2.1e-69 267.3 379 65.7
Ah.14g087050 Amaranthus hybridus HOM05D004193 ORTHO05D004862 1.7e-68 264.2 320 74.1
A08p13970 Brassica napus HOM05D004193 ORTHO05D004862 2.3e-68 263.8 391 66.5
BraA08t33388Z Brassica rapa HOM05D004193 ORTHO05D004862 2.3e-68 263.8 391 66.5
CAN.G411.59 Capsicum annuum HOM05D004193 ORTHO05D004862 8.7e-68 261.9 378 68.8
Rhsim13G0188600 Rhododendron simsii HOM05D004193 ORTHO05D004862 8.7e-68 261.9 404 67.3
Phvul.002G240100 Phaseolus vulgaris HOM05D004193 ORTHO05D004862 2.1e-66 257.3 391 66.5
Aa31LG6G1470 Aethionema arabicum HOM05D004193 ORTHO05D004862 6.2e-66 255.8 387 71.1
ATR0012G050 Amborella trichopoda HOM05D004193 ORTHO05D004862 6.2e-66 255.8 380 66.1
DCAR_027987 Daucus carota HOM05D004193 ORTHO05D004862 1.1e-65 255.0 388 67.3
arahy.Tifrunner.gnm1.ann1.XVCK9B Arachis hypogaea HOM05D004193 ORTHO05D004862 1.2e-64 251.5 381 68.5
Manes.16G042000 Manihot esculenta HOM05D004193 ORTHO05D004862 1.5e-64 251.1 183 69.4
BcaNung05916 Brassica carinata HOM05D004193 ORTHO05D004862 1.3e-63 248.1 388 70.1
HanXRQChr10g0316731 Helianthus annuus HOM05D004193 ORTHO05D004862 1.7e-63 247.7 388 66.2
Sp7g17460 Schrenkiella parvula HOM05D004193 ORTHO05D004862 1.1e-62 245.0 425 66.6
Lsat_1_v5_gn_1_108121 Lactuca sativa HOM05D004193 ORTHO05D004862 1.2e-61 241.5 384 66.1
arahy.Tifrunner.gnm1.ann1.3H0WIW Arachis hypogaea HOM05D004193 ORTHO05D004862 4.6e-61 239.6 340 66.5
C01p12740 Brassica napus HOM05D004193 ORTHO05D004862 7.9e-61 238.8 390 68.7
BolC1t01251H Brassica oleracea HOM05D004193 ORTHO05D004862 7.9e-61 238.8 390 68.7
SEGI_04477 Sequoiadendron giganteum HOM05D004193 ORTHO05D004862 8.7e-60 235.3 387 59.7
Peaxi162Scf00371g00032 Petunia axillaris HOM05D004193 ORTHO05D004862 1.9e-59 234.2 327 69.4
BcaC09g51473 Brassica carinata HOM05D004193 ORTHO05D004862 8.1e-58 228.8 385 68.3
Lsat_1_v5_gn_7_24240 Lactuca sativa HOM05D004193 ORTHO05D004862 1.5e-56 224.6 383 60.8
Prupe.4G065600 Prunus persica HOM05D004193 ORTHO05D004862 1.3e-55 221.5 384 47.9
CDE06G0006 Ceratophyllum demersum HOM05D006665 ORTHO05D008327 2.1e-53 214.2 369 42.0
BcaB07g30869 Brassica carinata HOM05D006665 ORTHO05D008327 1.0e-52 211.8 386 65.8
A09p21920 Brassica napus HOM05D006665 ORTHO05D008327 8.7e-52 208.8 382 64.9
MBI07_g09546_MAGBIO Magnolia biondii HOM05D004193 ORTHO05D004862 4.3e-51 206.5 273 76.9
BolC9t55679H Brassica oleracea HOM05D006665 ORTHO05D008327 6.2e-50 202.6 389 64.3
BraA09t37795Z Brassica rapa HOM05D006665 ORTHO05D008327 8.2e-50 202.2 378 64.8
BcaC04g21745 Brassica carinata HOM05D006665 ORTHO05D008327 4.1e-49 199.9 389 63.8
C09p28090 Brassica napus HOM05D006665 ORTHO05D008327 4.1e-49 199.9 389 63.8
ECA236G4320 Erigeron canadensis HOM05D004193 ORTHO05D004862 6.9e-49 199.1 414 54.1
Psat1g195760 Pisum sativum HOM05D004193 ORTHO05D004862 6.5e-47 192.6 282 74.1
Sp2g10680 Schrenkiella parvula HOM05D004193 ORTHO05D004862 1.6e-45 188.0 374 63.1
A09p43700 Brassica napus HOM05D004193 ORTHO05D004862 2.2e-42 177.6 192 54.2
BraA01t01950Z Brassica rapa HOM05D004193 ORTHO05D004862 2.2e-42 177.6 191 53.4
CDE02G0812 Ceratophyllum demersum HOM05D004193 ORTHO05D004862 2.2e-42 177.6 336 52.1
Zm00001eb153350 Zea mays HOM05D004193 ORTHO05D004862 2.2e-42 177.6 392 54.3
unitig_8.g4593 Utricularia gibba HOM05D004193 ORTHO05D004862 1.5e-40 171.4 165 55.8
AL8G12840 Arabidopsis lyrata HOM05D004193 ORTHO05D004862 5.9e-40 169.5 395 56.5
Lj1A1174T75 Lonicera japonica HOM05D004193 ORTHO05D004862 2.9e-39 167.2 280 75.0
arahy.Tifrunner.gnm1.ann1.EP0JTS Arachis hypogaea HOM05D004193 ORTHO05D004862 8.5e-39 165.6 293 64.5
Solyc03g006050.4 Solanum lycopersicum HOM05D004193 ORTHO05D004862 1.1e-38 165.2 119 66.4
SMO198G0035 Selaginella moellendorffii HOM05D004193 ORTHO05D004862 3.2e-38 163.7 391 49.4
HanXRQChr15g0480781 Helianthus annuus HOM05D004193 ORTHO05D004862 4.2e-38 163.3 326 64.1
AT5G45770 Arabidopsis thaliana HOM05D004193 ORTHO05D004862 3.6e-37 160.2 398 55.0
CSS0049237 Camellia sinensis var. sinensis HOM05D004193 ORTHO05D004862 2.8e-34 150.6 256 72.7
Carub.0008s0222 Capsella rubella HOM05D004193 ORTHO05D004862 8.2e-34 149.1 396 56.8
SMO198G0069 Selaginella moellendorffii HOM05D004193 ORTHO05D004862 1.7e-31 141.4 399 53.9
SEGI_20269 Sequoiadendron giganteum HOM05D004193 ORTHO05D004862 8.5e-31 139.0 326 55.8
CARHR176210 Cardamine hirsuta HOM05D004193 ORTHO05D004862 1.4e-28 131.7 388 46.9
COL.COLO4_31255 Corchorus olitorius HOM05D004193 ORTHO05D004862 1.4e-28 131.7 248 76.6
Glyma.05G159900 Glycine max HOM05D004193 ORTHO05D004862 3.7e-26 123.6 118 67.8
Actinidia35595 Actinidia chinensis HOM05D004193 ORTHO05D004862 2.6e-24 117.5 100 66.0
VMungo1185G0001 Vigna mungo HOM05D004193 ORTHO05D004862 2.9e-23 114.0 121 52.9
Nitab4.5_0008526g0040 Nicotiana tabacum HOM05D004193 ORTHO05D004862 9.4e-22 109.0 102 59.8
BraA07t30082Z Brassica rapa HOM05D004193 ORTHO05D004862 3.3e-19 100.5 171 43.3
AagrBONN_evm.TU.Sc2ySwM_362.2880 Anthoceros agrestis HOM05D004193 ORTHO05D004862 7.5e-19 99.4 188 34.6
Os01g0750400 Oryza sativa ssp. japonica HOM05D004193 ORTHO05D004862 3.1e-17 94.0 244 59.4
unitig_8.g4592 Utricularia gibba HOM05D004193 ORTHO05D004862 2.2e-15 87.8 109 45.0
Pp3c14_13680 Physcomitrium patens HOM05D004193 ORTHO05D004862 5.5e-14 83.2 154 32.5
Cfa015344 Carpinus fangiana HOM05D001136 ORTHO05D001144 1.2e-13 82.0 50 76.0
Ah.02g117850 Amaranthus hybridus HOM05D004193 ORTHO05D004862 1.0e-12 79.0 87 54.0
Cfa019730 Carpinus fangiana HOM05D004193 ORTHO05D004862 3.0e-12 77.4 50 72.0
ATR0705G001 Amborella trichopoda HOM05D004193 ORTHO05D004862 8.8e-12 75.9 111 56.8


User provided reference genes

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