Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN11G0747 Fragaria x ananassa HOM05D004280 ORTHO05D005059 5.3e-81 304.3 154 100.0
FAN25G1542 Fragaria x ananassa HOM05D004280 ORTHO05D005059 7.7e-80 300.4 154 98.7
FvH4_3g45340 Fragaria vesca HOM05D004280 ORTHO05D005059 2.7e-77 292.0 148 99.3
FAN16G1471 Fragaria x ananassa HOM05D004280 ORTHO05D005059 8.0e-77 290.4 153 95.4
RcHm_v2.0_Chr4g0431981 Rosa chinensis HOM05D004280 ORTHO05D005059 6.3e-74 280.8 147 97.3
RcHm_v2.0_Chr5g0083141 Rosa chinensis HOM05D004280 ORTHO05D005059 6.3e-74 280.8 147 97.3
MD11G1008600 Malus domestica HOM05D004280 ORTHO05D005059 4.2e-70 268.1 153 87.6
FAN21G3004 Fragaria x ananassa HOM05D004280 ORTHO05D005059 7.2e-70 267.3 139 97.1
MD03G1005700 Malus domestica HOM05D004280 ORTHO05D005059 7.2e-70 267.3 153 88.2
Prupe.6G007100 Prunus persica HOM05D004280 ORTHO05D005059 3.6e-69 265.0 148 89.9
TAR623G1159 Trochodendron aralioides HOM05D004280 ORTHO05D005059 9.8e-67 256.9 151 84.1
Nn7g35895 Nelumbo nucifera HOM05D004280 ORTHO05D005059 4.9e-66 254.6 148 83.1
QL01p008475 Quercus lobata HOM05D004280 ORTHO05D005059 4.9e-66 254.6 153 83.7
Thecc.09G208500 Theobroma cacao HOM05D004280 ORTHO05D005059 1.4e-65 253.1 147 82.3
Sed0023881 Sechium edule HOM05D004280 ORTHO05D005059 2.4e-65 252.3 149 83.9
CsaV3_5G026740 Cucumis sativus L. HOM05D004280 ORTHO05D005059 3.1e-65 251.9 148 83.1
Aqoxy7G03617 Aquilegia oxysepala HOM05D004280 ORTHO05D005059 5.4e-65 251.1 152 80.9
MELO3C021620.2 Cucumis melo HOM05D004280 ORTHO05D005059 5.4e-65 251.1 148 83.1
vmacro00623 Vaccinium macrocarpon HOM05D004280 ORTHO05D005059 5.4e-65 251.1 151 82.1
Dinv23876 Davidia involucrata HOM05D004280 ORTHO05D005059 7.0e-65 250.8 149 82.6
GSVIVG01025433001 Vitis vinifera HOM05D004280 ORTHO05D005059 9.1e-65 250.4 145 84.8
Manes.01G036600 Manihot esculenta HOM05D004280 ORTHO05D005059 1.2e-64 250.0 148 83.8
Gorai.004G017100 Gossypium raimondii HOM05D004280 ORTHO05D005059 1.6e-64 249.6 152 78.9
Rhsim09G0027500 Rhododendron simsii HOM05D004280 ORTHO05D005059 1.6e-64 249.6 149 83.2
RhsimUnG0194900 Rhododendron simsii HOM05D004280 ORTHO05D005059 1.6e-64 249.6 149 83.2
CSS0019544 Camellia sinensis var. sinensis HOM05D004280 ORTHO05D005059 3.5e-64 248.4 148 83.1
Haze_22962 Corylus avellana HOM05D004280 ORTHO05D005059 4.5e-64 248.1 152 82.9
Lj2A726G7 Lonicera japonica HOM05D004280 ORTHO05D005059 4.5e-64 248.1 151 81.5
CiPaw.16G086400 Carya illinoinensis HOM05D004280 ORTHO05D005059 7.7e-64 247.3 149 84.6
Haze_22956 Corylus avellana HOM05D004280 ORTHO05D005059 1.7e-63 246.1 152 82.2
DCAR_009024 Daucus carota HOM05D004280 ORTHO05D005059 1.7e-63 246.1 144 84.7
Gohir.D08G021800 Gossypium hirsutum HOM05D004280 ORTHO05D005059 2.9e-63 245.4 147 79.6
Sabra01G0004700 Salix brachista HOM05D004280 ORTHO05D005059 2.9e-63 245.4 149 80.5
CSS0019811 Camellia sinensis var. sinensis HOM05D004280 ORTHO05D005059 5.0e-63 244.6 145 84.1
Glyma.06G309800 Glycine max HOM05D004280 ORTHO05D005059 6.6e-63 244.2 149 81.2
Glyma.14G130400 Glycine max HOM05D004280 ORTHO05D005059 6.6e-63 244.2 149 81.2
Gohir.A08G011300 Gossypium hirsutum HOM05D004280 ORTHO05D005059 6.6e-63 244.2 147 78.9
Duzib170G0536 Durio zibethinus HOM05D004280 ORTHO05D005059 8.6e-63 243.8 147 79.6
Rhsim02G0077200 Rhododendron simsii HOM05D004280 ORTHO05D005059 8.6e-63 243.8 150 81.3
CiPaw.13G175600 Carya illinoinensis HOM05D004280 ORTHO05D005059 1.1e-62 243.4 149 83.9
ClCG09G019650 Citrullus lanatus HOM05D004280 ORTHO05D005059 1.1e-62 243.4 164 76.2
PGR102G2828 Punica granatum HOM05D004280 ORTHO05D005059 1.1e-62 243.4 147 80.3
Thhalv10011786m.g Eutrema salsugineum HOM05D004280 ORTHO05D005059 1.5e-62 243.0 147 80.3
Hma1.2p1_0843F.1_g227335 Hydrangea macrophylla HOM05D004280 ORTHO05D005059 1.5e-62 243.0 147 83.0
Hma1.2p1_0843F.1_g227340 Hydrangea macrophylla HOM05D004280 ORTHO05D005059 1.5e-62 243.0 147 83.0
Cc05_g01230 Coffea canephora HOM05D004280 ORTHO05D005059 1.9e-62 242.7 150 82.0
Glyma.14G154000 Glycine max HOM05D004280 ORTHO05D005059 2.5e-62 242.3 149 80.5
Sabra03G0163100 Salix brachista HOM05D004280 ORTHO05D005059 2.5e-62 242.3 149 80.5
BolC6t36783H Brassica oleracea HOM05D004280 ORTHO05D005059 3.3e-62 241.9 148 79.7
Cpa.g.sc119.63 Carica papaya HOM05D004280 ORTHO05D005059 4.2e-62 241.5 145 80.7
MBI05_g32463_MAGBIO Magnolia biondii HOM05D004280 ORTHO05D005059 4.2e-62 241.5 150 80.0
Cc01_g00630 Coffea canephora HOM05D004280 ORTHO05D005059 5.5e-62 241.1 150 80.7
Eucgr.B03612 Eucalyptus grandis HOM05D004280 ORTHO05D005059 5.5e-62 241.1 149 81.2
Hund03769 Selenicereus undatus HOM05D004280 ORTHO05D005059 5.5e-62 241.1 141 85.1
AT1G55300 Arabidopsis thaliana HOM05D004280 ORTHO05D005059 7.2e-62 240.7 146 79.5
BcaC08g44186 Brassica carinata HOM05D004280 ORTHO05D005059 7.2e-62 240.7 145 81.4
CANSAT01G2556 Cannabis sativa HOM05D004280 ORTHO05D005059 7.2e-62 240.7 153 78.4
Potri.001G006300 Populus trichocarpa HOM05D004280 ORTHO05D005059 7.2e-62 240.7 147 79.6
arahy.Tifrunner.gnm1.ann1.0AF3IJ Arachis hypogaea HOM05D004280 ORTHO05D005059 9.5e-62 240.4 152 79.6
BcaB02g10831 Brassica carinata HOM05D004280 ORTHO05D005059 9.5e-62 240.4 141 83.0
C06p15910 Brassica napus HOM05D004280 ORTHO05D005059 9.5e-62 240.4 145 80.7
Medtr3g083880 Medicago truncatula HOM05D004280 ORTHO05D005059 1.2e-61 240.0 150 79.3
CARHR044950 Cardamine hirsuta HOM05D004280 ORTHO05D005059 1.6e-61 239.6 145 80.0
Peaxi162Scf01112g00112 Petunia axillaris HOM05D004280 ORTHO05D005059 1.6e-61 239.6 153 75.2
BolC6t36098H Brassica oleracea HOM05D004280 ORTHO05D005059 2.1e-61 239.2 146 79.5
Carub.0001s4380 Capsella rubella HOM05D004280 ORTHO05D005059 2.1e-61 239.2 147 78.2
CAN.G193.6 Capsicum annuum HOM05D004280 ORTHO05D005059 2.1e-61 239.2 149 78.5
C06p10250 Brassica napus HOM05D004280 ORTHO05D005059 2.8e-61 238.8 145 80.0
Ciclev10016632m.g Citrus clementina HOM05D004280 ORTHO05D005059 2.8e-61 238.8 147 80.3
TWI60G1521 Tripterygium wilfordii HOM05D004280 ORTHO05D005059 3.6e-61 238.4 147 79.6
unitig_749.g13584 Utricularia gibba HOM05D004280 ORTHO05D005059 4.7e-61 238.0 152 77.0
COL.COLO4_35029 Corchorus olitorius HOM05D004280 ORTHO05D005059 6.1e-61 237.7 149 79.2
Aa31LG10G1060 Aethionema arabicum HOM05D004280 ORTHO05D005059 8.0e-61 237.3 147 77.6
TPR.G24159 Trifolium pratense HOM05D004280 ORTHO05D005059 8.0e-61 237.3 150 79.3
A06p00280 Brassica napus HOM05D004280 ORTHO05D005059 1.0e-60 236.9 145 79.3
BraA06t23245Z Brassica rapa HOM05D004280 ORTHO05D005059 1.0e-60 236.9 145 79.3
ATR0681G021 Amborella trichopoda HOM05D004280 ORTHO05D005059 1.4e-60 236.5 152 77.6
Manes.04G095700 Manihot esculenta HOM05D004280 ORTHO05D005059 2.3e-60 235.7 148 79.1
Atru.chr1.3614 Acer truncatum HOM05D004280 ORTHO05D005059 3.0e-60 235.3 147 78.9
MSTRG.18872 Avicennia marina HOM05D004280 ORTHO05D005059 3.0e-60 235.3 148 77.7
Ca_16394_v3 Cicer arietinum L. HOM05D004280 ORTHO05D005059 3.0e-60 235.3 149 77.2
Sp1g40960 Schrenkiella parvula HOM05D004280 ORTHO05D005059 3.0e-60 235.3 147 77.6
ECA248G0362 Erigeron canadensis HOM05D004280 ORTHO05D005059 5.2e-60 234.6 147 79.6
Phvul.001G056600 Phaseolus vulgaris HOM05D004280 ORTHO05D005059 6.8e-60 234.2 148 78.4
PGSC0003DMG401025662 Solanum tuberosum HOM05D004280 ORTHO05D005059 6.8e-60 234.2 151 75.5
ECA233G4188 Erigeron canadensis HOM05D004280 ORTHO05D005059 8.9e-60 233.8 148 77.7
Potri.003G218700 Populus trichocarpa HOM05D004280 ORTHO05D005059 8.9e-60 233.8 147 78.2
Duzib150G0115 Durio zibethinus HOM05D004280 ORTHO05D005059 1.2e-59 233.4 148 77.0
Migut.D02547 Erythranthe guttata HOM05D004280 ORTHO05D005059 1.5e-59 233.0 148 76.4
THA.LOC104822674 Tarenaya hassleriana HOM05D004280 ORTHO05D005059 1.5e-59 233.0 147 75.5
HPP92_017297 Vanilla planifolia HOM05D004280 ORTHO05D005059 1.5e-59 233.0 146 76.0
BraA05t20650Z Brassica rapa HOM05D004280 ORTHO05D005059 2.0e-59 232.6 141 80.9
Lj6g0003060 Lotus japonicus HOM05D004280 ORTHO05D005059 2.6e-59 232.3 150 77.3
SalBow6G7108 Salvia bowleyana HOM05D004280 ORTHO05D005059 2.6e-59 232.3 148 75.0
SGA_v2.0_scaffold13G06338 Striga asiatica HOM05D004280 ORTHO05D005059 4.4e-59 231.5 151 78.1
Glyma.11G173655 Glycine max HOM05D004280 ORTHO05D005059 5.7e-59 231.1 150 78.7
HanXRQChr13g0405321 Helianthus annuus HOM05D004280 ORTHO05D005059 9.8e-59 230.3 150 78.0
VMungo0647G2277 Vigna mungo HOM05D004280 ORTHO05D005059 1.3e-58 229.9 145 80.0
Lsat_1_v5_gn_1_67700 Lactuca sativa HOM05D004280 ORTHO05D005059 2.2e-58 229.2 147 76.2
Solyc04g076580.4 Solanum lycopersicum HOM05D004280 ORTHO05D005059 2.9e-58 228.8 148 76.4
A05p17570 Brassica napus HOM05D004280 ORTHO05D005059 4.9e-58 228.0 145 77.9
SalBow4G3146 Salvia bowleyana HOM05D004280 ORTHO05D005059 6.3e-58 227.6 166 68.7
SEGI_26181 Sequoiadendron giganteum HOM05D004280 ORTHO05D005059 1.1e-57 226.9 148 73.6
Psat5g102320 Pisum sativum HOM05D004280 ORTHO05D005059 2.4e-57 225.7 150 74.7
PSO210G5203 Papaver somniferum HOM05D004280 ORTHO05D005059 3.2e-57 225.3 151 75.5
PSO761G0405 Papaver somniferum HOM05D004280 ORTHO05D005059 3.2e-57 225.3 151 75.5
Lsat_1_v5_gn_6_54260 Lactuca sativa HOM05D004280 ORTHO05D005059 1.2e-56 223.4 149 75.8
Lalb_Chr08g0230321 Lupinus albus HOM05D004280 ORTHO05D005059 1.2e-56 223.4 162 71.6
Ah.04g157750 Amaranthus hybridus HOM05D004280 ORTHO05D005059 2.0e-56 222.6 154 74.0
Sc10g0001010 Simmondsia chinensis HOM05D004280 ORTHO05D005059 5.9e-56 221.1 144 77.1
Os05g0347000 Oryza sativa ssp. japonica HOM05D004280 ORTHO05D005059 1.0e-55 220.3 145 75.9
Zm00001eb233380 Zea mays HOM05D004280 ORTHO05D005059 5.0e-55 218.0 143 75.5
Ah.04g157660 Amaranthus hybridus HOM05D004280 ORTHO05D005059 1.5e-54 216.5 154 71.4
AagrBONN_evm.TU.Sc2ySwM_344.2640 Anthoceros agrestis HOM05D004280 ORTHO05D005059 1.2e-53 213.4 148 68.2
SGA_v2.0_scaffold329G48825 Striga asiatica HOM05D004280 ORTHO05D005059 1.6e-53 213.0 139 79.1
SGA_v2.0_scaffold552G52891 Striga asiatica HOM05D004280 ORTHO05D005059 1.6e-53 213.0 139 79.1
SGA_v2.0_scaffold693G53465 Striga asiatica HOM05D004280 ORTHO05D005059 1.6e-53 213.0 139 79.1
Mapoly0011s0044 Marchantia polymorpha HOM05D004280 ORTHO05D005059 4.7e-53 211.5 149 69.8
HanXRQChr01g0021661 Helianthus annuus HOM05D004280 ORTHO05D005059 1.0e-52 210.3 123 84.6
SGA_v2.0_scaffold738G53541 Striga asiatica HOM05D004280 ORTHO05D005059 1.4e-52 209.9 139 77.7
SEGI_04342 Sequoiadendron giganteum HOM05D004280 ORTHO05D005059 2.3e-52 209.1 148 66.9
AUR62032745 Chenopodium quinoa HOM05D004280 ORTHO05D005059 3.1e-52 208.8 125 81.6
Zm00001eb059570 Zea mays HOM05D004280 ORTHO05D005059 3.1e-52 208.8 143 72.7
Zm00001eb395740 Zea mays HOM05D004280 ORTHO05D005059 1.2e-51 206.8 139 74.1
AUR62015306 Chenopodium quinoa HOM05D004280 ORTHO05D005059 2.0e-51 206.1 123 81.3
SGA_v2.0_scaffold521G52700 Striga asiatica HOM05D004280 ORTHO05D005059 3.7e-50 201.8 155 71.0
SGA_v2.0_scaffold674G53431 Striga asiatica HOM05D004280 ORTHO05D005059 3.7e-50 201.8 155 71.0
Pp3c14_18710 Physcomitrium patens HOM05D004280 ORTHO05D005059 5.4e-49 198.0 148 65.5
Os01g0648500 Oryza sativa ssp. japonica HOM05D004280 ORTHO05D005059 9.2e-49 197.2 134 73.9
Oeu059672.2 Olea europaea HOM05D004280 ORTHO05D005059 2.0e-48 196.1 123 78.9
SGA_v2.0_scaffold674G53436 Striga asiatica HOM05D004280 ORTHO05D005059 1.0e-47 193.7 155 68.4
SMO146G0138 Selaginella moellendorffii HOM05D004280 ORTHO05D005059 1.3e-47 193.4 150 66.7
Pp3c1_41986 Physcomitrium patens HOM05D004280 ORTHO05D005059 5.0e-47 191.4 143 66.4
CBR_g22380 Chara braunii HOM05D004280 ORTHO05D005059 8.6e-47 190.7 148 62.2
Zm00001eb068820 Zea mays HOM05D004280 ORTHO05D005059 1.5e-46 189.9 143 69.2
PGSC0003DMG400009351 Solanum tuberosum HOM05D004280 ORTHO05D005059 5.6e-46 188.0 122 76.2
Cc01_g02840 Coffea canephora HOM05D004280 ORTHO05D005059 9.5e-46 187.2 150 68.0
SMO169G0010 Selaginella moellendorffii HOM05D004280 ORTHO05D005059 6.2e-45 184.5 150 62.7
Sed0016974 Sechium edule HOM05D004280 ORTHO05D005059 2.0e-43 179.5 145 65.5
Cfa009582 Carpinus fangiana HOM05D004280 ORTHO05D005059 5.8e-43 177.9 172 61.0
Haze_22967 Corylus avellana HOM05D004280 ORTHO05D005059 9.8e-43 177.2 106 84.9
SGA_v2.0_scaffold2280G54098 Striga asiatica HOM05D004280 ORTHO05D005059 1.3e-42 176.8 112 79.5
Nitab4.5_0000131g0050 Nicotiana tabacum HOM05D004280 ORTHO05D005059 1.7e-42 176.4 105 80.0
AL1G63340 Arabidopsis lyrata HOM05D004280 ORTHO05D005059 1.9e-41 172.9 101 80.2
Phvul.001G056500 Phaseolus vulgaris HOM05D004280 ORTHO05D005059 3.0e-39 165.6 101 79.2
Cc00_g23960 Coffea canephora HOM05D004280 ORTHO05D005059 8.1e-37 157.5 96 79.2
Actinidia11301 Actinidia chinensis HOM05D004280 ORTHO05D005059 4.4e-35 151.8 89 83.1
SGA_v2.0_scaffold6G03409 Striga asiatica HOM05D004280 ORTHO05D005059 7.6e-35 151.0 107 68.2
Dinv13451 Davidia involucrata HOM05D004280 ORTHO05D005059 9.9e-35 150.6 92 80.4
Nitab4.5_0006954g0010 Nicotiana tabacum HOM05D004280 ORTHO05D005059 2.4e-33 146.0 83 83.1
Glyma.17G202802 Glycine max HOM05D004280 ORTHO05D005059 2.5e-30 136.0 82 81.7
Atru.chr7.1077 Acer truncatum HOM05D004280 ORTHO05D005059 1.6e-29 133.3 127 61.4
Zm00001eb211560 Zea mays HOM05D004280 ORTHO05D005059 3.1e-28 129.0 150 52.0
Sopen00g013070 Solanum pennellii HOM05D004280 ORTHO05D005059 6.0e-24 114.8 68 77.9
AagrBONN_evm.TU.Sc2ySwM_362.2805 Anthoceros agrestis HOM05D004280 ORTHO05D005059 2.3e-23 112.8 96 58.3
Cre01.g011200 Chlamydomonas reinhardtii HOM05D004280 ORTHO05D005059 3.6e-21 105.5 140 42.1
Cc00_g20490 Coffea canephora HOM05D004280 ORTHO05D005059 1.7e-18 96.7 63 73.0
PRCOL_00003189 Prasinoderma coloniale HOM05D004280 ORTHO05D005059 1.1e-14 84.0 157 33.1
Thhalv10012232m.g Eutrema salsugineum HOM05D004280 ORTHO05D005059 7.3e-14 81.3 68 63.2
EL10Ac4g09635 Beta vulgaris HOM05D004280 ORTHO05D005059 1.1e-12 77.4 77 57.1
Cfa024345 Carpinus fangiana HOM05D004280 ORTHO05D122617 1.4e-09 67.0 158 31.6
unitig_26.g9445 Utricularia gibba HOM05D004280 ORTHO05D005059 4.2e-09 65.5 85 48.2
ECA233G4675 Erigeron canadensis HOM05D004280 ORTHO05D003273 6.7e-07 58.2 32 78.1
Sopen04g030300 Solanum pennellii HOM05D004280 ORTHO05D005059 3.3e-06 55.8 39 74.4


User provided reference genes

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