Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN11G0738 Fragaria x ananassa HOM05D004092 ORTHO05D005448 0.0e+00 1546.6 832 100.0
FvH4_3g15370 Fragaria vesca HOM05D004092 ORTHO05D005448 0.0e+00 1535.4 846 97.4
FAN16G3313 Fragaria x ananassa HOM05D004092 ORTHO05D005448 0.0e+00 1498.4 832 96.4
FAN25G1415 Fragaria x ananassa HOM05D004092 ORTHO05D005448 0.0e+00 1415.6 832 92.1
RcHm_v2.0_Chr5g0025821 Rosa chinensis HOM05D004092 ORTHO05D005448 0.0e+00 1405.6 847 88.5
Prupe.4G136600 Prunus persica HOM05D004092 ORTHO05D005448 0.0e+00 1181.4 843 75.9
MD05G1223600 Malus domestica HOM05D004092 ORTHO05D005448 0.0e+00 1150.2 839 76.2
MD10G1205100 Malus domestica HOM05D004092 ORTHO05D005448 0.0e+00 1128.6 838 75.3
CiPaw.11G063100 Carya illinoinensis HOM05D004092 ORTHO05D005448 1.3e-298 1029.6 841 68.8
QL04p079824 Quercus lobata HOM05D004092 ORTHO05D005448 2.2e-298 1028.9 851 67.9
QL04p080030 Quercus lobata HOM05D004092 ORTHO05D005448 2.2e-298 1028.9 851 67.6
CANSAT80G2562 Cannabis sativa HOM05D004092 ORTHO05D005448 3.1e-292 1008.4 840 67.3
Duzib213G0752 Durio zibethinus HOM05D004092 ORTHO05D005448 6.9e-292 1007.3 847 66.1
Thecc.07G169400 Theobroma cacao HOM05D004092 ORTHO05D005448 1.5e-291 1006.1 844 66.8
Cfa005512 Carpinus fangiana HOM05D004092 ORTHO05D005448 2.6e-291 1005.4 840 67.1
Sabra05G0079500 Salix brachista HOM05D004092 ORTHO05D005448 5.8e-291 1004.2 846 65.8
Ciclev10004308m.g Citrus clementina HOM05D004092 ORTHO05D005448 2.9e-290 1001.9 850 66.4
Glyma.10G245700 Glycine max HOM05D004092 ORTHO05D005448 6.5e-290 1000.7 837 66.3
Glyma.12G070100 Glycine max HOM05D004092 ORTHO05D005448 1.2e-288 996.5 837 65.2
Atru.chr1.122 Acer truncatum HOM05D004092 ORTHO05D005448 2.1e-288 995.7 853 65.8
Phvul.011G076150 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 4.6e-288 994.6 838 64.9
Lalb_Chr01g0007101 Lupinus albus HOM05D004092 ORTHO05D005448 6.0e-288 994.2 846 64.7
Phvul.L001854 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 1.0e-287 993.4 838 64.8
VMungo1127G2087 Vigna mungo HOM05D004092 ORTHO05D005448 1.3e-287 993.0 839 65.0
GSVIVG01036806001 Vitis vinifera HOM05D004092 ORTHO05D005448 1.5e-286 989.6 844 64.8
MELO3C012616.2 Cucumis melo HOM05D004092 ORTHO05D005448 9.7e-286 986.9 837 65.9
Gorai.013G141600 Gossypium raimondii HOM05D004092 ORTHO05D005448 9.7e-286 986.9 850 64.6
Potri.005G096900 Populus trichocarpa HOM05D004092 ORTHO05D005448 1.6e-285 986.1 843 65.0
Gohir.D13G126400 Gossypium hirsutum HOM05D004092 ORTHO05D005448 5.3e-284 981.1 850 64.4
Lalb_Chr03g0031641 Lupinus albus HOM05D004092 ORTHO05D005448 6.9e-284 980.7 840 64.2
Gohir.A13G122400 Gossypium hirsutum HOM05D004092 ORTHO05D005448 9.0e-284 980.3 851 64.4
ClCG09G022650 Citrullus lanatus HOM05D004092 ORTHO05D005448 2.0e-283 979.2 834 66.3
Actinidia35425 Actinidia chinensis HOM05D004092 ORTHO05D005448 2.9e-282 975.3 849 64.8
arahy.Tifrunner.gnm1.ann1.7JS6EV Arachis hypogaea HOM05D004092 ORTHO05D005448 3.8e-282 974.9 845 64.3
Hma1.2p1_0334F.1_g128570 Hydrangea macrophylla HOM05D004092 ORTHO05D005448 6.5e-282 974.2 840 65.5
CsaV3_7G022820 Cucumis sativus L. HOM05D004092 ORTHO05D005448 1.1e-281 973.4 837 65.2
TWI38G0748 Tripterygium wilfordii HOM05D004092 ORTHO05D005448 9.4e-281 970.3 845 64.6
Eucgr.E01785 Eucalyptus grandis HOM05D004092 ORTHO05D005448 2.1e-280 969.1 841 63.6
Manes.14G011200 Manihot esculenta HOM05D004092 ORTHO05D005448 2.1e-280 969.1 843 64.8
arahy.Tifrunner.gnm1.ann1.R5WWIH Arachis hypogaea HOM05D004092 ORTHO05D005448 2.7e-280 968.8 845 63.9
Dinv19600 Davidia involucrata HOM05D004092 ORTHO05D005448 1.8e-279 966.1 851 65.5
Oeu051991.1 Olea europaea HOM05D004092 ORTHO05D005448 8.2e-277 957.2 845 63.4
Ca_07696_v3 Cicer arietinum L. HOM05D004092 ORTHO05D005448 2.4e-276 955.7 841 63.0
COL.COLO4_07946 Corchorus olitorius HOM05D004092 ORTHO05D005448 7.7e-275 950.7 848 64.0
CSS0013287 Camellia sinensis var. sinensis HOM05D004092 ORTHO05D005448 3.8e-274 948.3 862 65.5
Lj1g0019540 Lotus japonicus HOM05D004092 ORTHO05D005448 1.1e-273 946.8 837 62.2
THA.LOC104808127 Tarenaya hassleriana HOM05D004092 ORTHO05D005448 5.5e-273 944.5 847 63.2
TAR362G1264 Trochodendron aralioides HOM05D004092 ORTHO05D005448 1.6e-272 943.0 837 62.6
Sed0009567 Sechium edule HOM05D004092 ORTHO05D005448 7.9e-272 940.6 834 65.7
TPR.G6646 Trifolium pratense HOM05D004092 ORTHO05D005448 1.8e-271 939.5 843 62.5
MSTRG.7071 Avicennia marina HOM05D004092 ORTHO05D005448 6.5e-266 921.0 838 61.2
Psat3g124440 Pisum sativum HOM05D004092 ORTHO05D005448 1.9e-265 919.5 828 61.7
PGR044G0523 Punica granatum HOM05D004092 ORTHO05D005448 4.2e-265 918.3 829 61.5
DCAR_026669 Daucus carota HOM05D004092 ORTHO05D005448 2.1e-264 916.0 838 62.2
Migut.M01537 Erythranthe guttata HOM05D004092 ORTHO05D005448 2.1e-264 916.0 834 60.2
CAN.G851.30 Capsicum annuum HOM05D004092 ORTHO05D005448 8.0e-264 914.1 840 60.8
Solyc04g074090.4 Solanum lycopersicum HOM05D004092 ORTHO05D005448 5.7e-262 907.9 841 61.0
Medtr7g070240 Medicago truncatula HOM05D004092 ORTHO05D005448 1.3e-261 906.7 842 61.0
MBI18_g01899_MAGBIO Magnolia biondii HOM05D004092 ORTHO05D005448 4.5e-259 898.3 841 61.8
SalBow8G5525 Salvia bowleyana HOM05D004092 ORTHO05D005448 5.2e-255 884.8 837 59.5
SalBow6G0067 Salvia bowleyana HOM05D004092 ORTHO05D005448 9.7e-254 880.6 845 59.1
Peaxi162Scf00041g01738 Petunia axillaris HOM05D004092 ORTHO05D005448 8.3e-253 877.5 838 61.1
SGA_v2.0_scaffold186G40203 Striga asiatica HOM05D004092 ORTHO05D005448 1.8e-252 876.3 863 58.3
Lsat_1_v5_gn_7_110180 Lactuca sativa HOM05D004092 ORTHO05D005448 1.7e-250 869.8 845 59.5
Cc05_g16260 Coffea canephora HOM05D004092 ORTHO05D005448 2.2e-250 869.4 834 60.2
ECA236G4689 Erigeron canadensis HOM05D004092 ORTHO05D005448 9.4e-249 864.0 843 58.2
Aa31LG4G1850 Aethionema arabicum HOM05D004092 ORTHO05D005448 1.2e-248 863.6 846 58.7
Aqoxy3G03661 Aquilegia oxysepala HOM05D004092 ORTHO05D005448 1.5e-246 856.7 835 60.2
HanXRQChr11g0335681 Helianthus annuus HOM05D004092 ORTHO05D005448 1.7e-245 853.2 843 58.2
vmacro09775 Vaccinium macrocarpon HOM05D004092 ORTHO05D005448 5.4e-244 848.2 928 55.0
SalBow6G4089 Salvia bowleyana HOM05D004092 ORTHO05D005448 1.6e-243 846.7 845 56.7
AT1G79150 Arabidopsis thaliana HOM05D004092 ORTHO05D005448 5.9e-243 844.7 845 58.2
CDE01G0334 Ceratophyllum demersum HOM05D004092 ORTHO05D005448 7.7e-243 844.3 842 57.7
Carub.0002s2602 Capsella rubella HOM05D004092 ORTHO05D005448 1.1e-241 840.5 818 60.3
BolC6t40319H Brassica oleracea HOM05D004092 ORTHO05D005448 2.3e-239 832.8 822 59.4
AL2G39620 Arabidopsis lyrata HOM05D004092 ORTHO05D005448 3.0e-239 832.4 847 58.3
BcaC08g47477 Brassica carinata HOM05D004092 ORTHO05D005448 2.0e-238 829.7 840 58.6
C06p53020 Brassica napus HOM05D004092 ORTHO05D005448 2.0e-238 829.7 840 58.6
PSO063G0010 Papaver somniferum HOM05D004092 ORTHO05D005448 2.6e-238 829.3 857 58.2
Sc08g0008610 Simmondsia chinensis HOM05D004092 ORTHO05D005448 1.4e-236 823.5 791 58.8
A07p44270 Brassica napus HOM05D004092 ORTHO05D005448 2.4e-236 822.8 841 58.7
BraA07t31936Z Brassica rapa HOM05D004092 ORTHO05D005448 2.4e-236 822.8 841 58.7
HPP92_004307 Vanilla planifolia HOM05D004092 ORTHO05D005448 3.1e-236 822.4 856 55.3
CARHR072800 Cardamine hirsuta HOM05D004092 ORTHO05D005448 7.8e-235 817.8 844 57.8
PSO782G4649 Papaver somniferum HOM05D004092 ORTHO05D005448 8.6e-234 814.3 855 57.1
EL10Ac2g03277 Beta vulgaris HOM05D004092 ORTHO05D005448 3.6e-232 808.9 875 53.9
Nitab4.5_0005777g0060 Nicotiana tabacum HOM05D004092 ORTHO05D005448 1.8e-231 806.6 836 55.9
BcaB02g08669 Brassica carinata HOM05D004092 ORTHO05D005448 4.0e-231 805.4 844 57.0
Lju337C5G4 Lonicera japonica HOM05D004092 ORTHO05D005448 1.2e-230 803.9 830 59.2
ATR0763G063 Amborella trichopoda HOM05D004092 ORTHO05D005448 9.8e-230 800.8 841 54.5
Nitab4.5_0000232g0210 Nicotiana tabacum HOM05D004092 ORTHO05D005448 1.2e-222 777.3 833 54.9
AUR62026892 Chenopodium quinoa HOM05D004092 ORTHO05D005448 1.3e-218 763.8 841 54.1
Nn5g27645 Nelumbo nucifera HOM05D004092 ORTHO05D005448 1.3e-218 763.8 849 53.9
Zm00001eb020130 Zea mays HOM05D004092 ORTHO05D005448 1.4e-207 727.2 850 51.3
BcaNung04898 Brassica carinata HOM05D004092 ORTHO05D005448 1.5e-206 723.8 690 61.0
Os06g0498500 Oryza sativa ssp. japonica HOM05D004092 ORTHO05D005448 2.1e-203 713.4 812 52.7
Thhalv10018125m.g Eutrema salsugineum HOM05D004092 ORTHO05D005448 1.3e-202 710.7 681 59.5
SEGI_30171 Sequoiadendron giganteum HOM05D004092 ORTHO05D005448 1.1e-199 701.0 849 49.7
AUR62016815 Chenopodium quinoa HOM05D004092 ORTHO05D005448 3.8e-197 692.6 830 49.6
FAN21G2977 Fragaria x ananassa HOM05D004092 ORTHO05D005448 1.9e-196 690.3 373 97.1
Sp5g34210 Schrenkiella parvula HOM05D004092 ORTHO05D005448 1.5e-190 670.6 624 60.9
Phvul.L001940 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 1.1e-188 664.5 554 63.5
Rhsim04G0123500 Rhododendron simsii HOM05D004092 ORTHO05D005448 6.5e-165 585.5 611 57.6
unitig_32.g11083 Utricularia gibba HOM05D004092 ORTHO05D005448 1.7e-160 570.9 608 54.9
AagrBONN_evm.TU.Sc2ySwM_117.3368 Anthoceros agrestis HOM05D004092 ORTHO05D005448 3.9e-154 549.7 891 39.3
SMO169G0313 Selaginella moellendorffii HOM05D004092 ORTHO05D005448 2.4e-143 513.8 857 41.0
Mapoly0001s0281 Marchantia polymorpha HOM05D004092 ORTHO05D005448 4.0e-138 496.5 836 41.1
Cpa.g.sc4.30 Carica papaya HOM05D004092 ORTHO05D005448 1.3e-136 491.5 383 68.4
Pp3c3_9760 Physcomitrium patens HOM05D004092 ORTHO05D005448 1.7e-136 491.1 883 38.5
CAN.G101.16 Capsicum annuum HOM05D004092 ORTHO05D005448 4.1e-135 486.5 439 62.2
RhsimUnG0180500 Rhododendron simsii HOM05D004092 ORTHO05D005448 8.3e-128 462.2 495 57.2
Hma1.2p1_0334F.1_g128560 Hydrangea macrophylla HOM05D004092 ORTHO05D005448 1.3e-112 411.8 437 57.2
Eucgr.G02299 Eucalyptus grandis HOM05D004092 ORTHO05D005448 1.6e-107 394.8 424 53.1
CBR_g30814 Chara braunii HOM05D004092 ORTHO05D005448 3.5e-102 377.1 936 31.8
Sopen00g013080 Solanum pennellii HOM05D004092 ORTHO05D005448 2.0e-97 361.3 292 64.7
Rhsim04G0004800 Rhododendron simsii HOM05D004092 ORTHO05D005448 1.7e-96 358.2 327 61.5
CAN.G101.17 Capsicum annuum HOM05D004092 ORTHO05D005448 2.0e-89 334.7 326 58.9
Haze_01706 Corylus avellana HOM05D004092 ORTHO05D005448 1.4e-87 328.6 239 74.5
Haze_01709 Corylus avellana HOM05D004092 ORTHO05D005448 2.4e-87 327.8 238 74.4
SHI21021 Sapria himalayana HOM05D004092 ORTHO05D005448 2.5e-84 317.8 449 43.4
Haze_01704 Corylus avellana HOM05D004092 ORTHO05D005448 1.3e-83 315.5 298 63.1
Eucgr.F00934 Eucalyptus grandis HOM05D004092 ORTHO05D005448 6.2e-75 286.6 333 49.5
Sopen00g010230 Solanum pennellii HOM05D004092 ORTHO05D005448 9.6e-68 262.7 186 71.5
PGR138G0002 Punica granatum HOM05D004092 ORTHO05D005448 4.8e-67 260.4 273 57.5
Haze_01705 Corylus avellana HOM05D004092 ORTHO05D005448 1.2e-65 255.8 227 59.0
SHI21022 Sapria himalayana HOM05D004092 ORTHO05D005448 6.7e-61 240.0 197 65.5
Lsat_1_v5_gn_2_21921 Lactuca sativa HOM05D004092 ORTHO05D005448 1.7e-56 225.3 158 72.2
MCO10G157 Micromonas commoda HOM05D004092 ORTHO05D005448 2.2e-56 224.9 928 26.5
unitig_32.g11084 Utricularia gibba HOM05D004092 ORTHO05D005448 5.5e-55 220.3 217 56.2
Phvul.011G073301 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 1.9e-47 195.3 182 57.7
Rhsim04G0116800 Rhododendron simsii HOM05D005276 ORTHO05D006813 6.3e-43 180.3 209 53.6
SalBow7G2721 Salvia bowleyana HOM05D004092 ORTHO05D005448 1.6e-38 165.6 148 60.8
Rhsim04G0004600 Rhododendron simsii HOM05D004092 ORTHO05D005448 2.3e-37 161.8 145 62.8
Psat1g207400 Pisum sativum HOM05D004092 ORTHO05D005448 1.4e-34 152.5 171 53.2
PRCOL_00003431 Prasinoderma coloniale HOM05D004092 ORTHO05D005448 3.1e-34 151.4 575 27.5
Sopen00g012990 Solanum pennellii HOM05D004092 ORTHO05D005448 9.1e-34 149.8 160 55.6
BolC6t38166H Brassica oleracea HOM05D004092 ORTHO05D005448 6.5e-32 143.7 285 39.3
Glyma.11G148802 Glycine max HOM05D004092 ORTHO05D016651 1.1e-31 142.9 103 69.9
Cfa022337 Carpinus fangiana HOM05D004092 ORTHO05D005448 1.9e-31 142.1 587 27.1
C06p30050 Brassica napus HOM05D004092 ORTHO05D005448 1.8e-29 135.6 282 38.7
SalBow1G6550 Salvia bowleyana HOM05D004092 ORTHO05D005448 1.8e-29 135.6 170 47.1
BcaC08g45374 Brassica carinata HOM05D004092 ORTHO05D005448 8.8e-29 133.3 290 37.6
Actinidia37125 Actinidia chinensis HOM05D004092 ORTHO05D005448 2.2e-27 128.6 106 64.2
Cre16.g659600 Chlamydomonas reinhardtii HOM05D004092 ORTHO05D005448 3.5e-25 121.3 543 24.5
BcaB02g07203 Brassica carinata HOM05D004092 ORTHO05D005448 1.8e-21 109.0 118 51.7
Cpa.g.sc2160.2 Carica papaya HOM05D004092 ORTHO05D005448 2.2e-19 102.1 60 75.0
Actinidia37124 Actinidia chinensis HOM05D004092 ORTHO05D005448 6.3e-19 100.5 76 67.1
FAN24G0390 Fragaria x ananassa HOM05D004092 ORTHO05D016651 3.1e-18 98.2 60 81.7
FvH4_6g51840 Fragaria vesca HOM05D004092 ORTHO05D016651 1.2e-17 96.3 62 77.4
FAN01G1588 Fragaria x ananassa HOM05D004092 ORTHO05D016651 1.2e-17 96.3 62 77.4
Sopen00g013090 Solanum pennellii HOM05D004092 ORTHO05D005448 2.9e-16 91.7 96 54.2
QL04p079914 Quercus lobata HOM05D004092 ORTHO05D005448 4.2e-15 87.8 58 69.0
Phvul.L001640 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 5.2e-13 80.9 63 58.7
A07p27270 Brassica napus HOM05D004092 ORTHO05D005448 6.8e-13 80.5 188 41.0
BraA07t30370Z Brassica rapa HOM05D004092 ORTHO05D005448 2.6e-12 78.6 191 40.3
Rhsim04G0004900 Rhododendron simsii HOM05D004092 ORTHO05D005448 2.6e-12 78.6 69 58.0
AL4G15030 Arabidopsis lyrata HOM05D001020 ORTHO05D001137 6.3e-11 73.9 180 35.6
FAN14G4793 Fragaria x ananassa HOM05D004092 ORTHO05D016651 6.3e-11 73.9 49 73.5
ECA232G3953 Erigeron canadensis HOM05D015936 ORTHO05D022524 1.8e-10 72.4 65 55.4
FAN24G0029 Fragaria x ananassa HOM05D004092 ORTHO05D016651 1.8e-10 72.4 49 73.5
FAN03G1151 Fragaria x ananassa HOM05D004092 ORTHO05D016651 4.1e-10 71.2 52 67.3
Actinidia37123 Actinidia chinensis HOM05D004092 ORTHO05D005448 7.0e-10 70.5 126 41.3
arahy.Tifrunner.gnm1.ann1.83PK1U Arachis hypogaea HOM05D004092 ORTHO05D016651 1.0e-08 66.6 55 56.4
arahy.Tifrunner.gnm1.ann1.BR68XX Arachis hypogaea HOM05D002764 ORTHO05D002960 1.5e-07 62.8 89 47.2


User provided reference genes

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