Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_3g29370 Fragaria vesca HOM05D005924 ORTHO05D007290 1.1e-80 303.1 148 100.0
FAN11G0697 Fragaria x ananassa HOM05D005924 ORTHO05D007290 1.1e-80 303.1 148 100.0
FAN21G3132 Fragaria x ananassa HOM05D005924 ORTHO05D007290 6.3e-79 297.4 148 98.0
FAN25G0770 Fragaria x ananassa HOM05D005924 ORTHO05D007290 5.0e-76 287.7 148 96.6
RcHm_v2.0_Chr5g0053761 Rosa chinensis HOM05D005924 ORTHO05D007290 4.7e-66 254.6 151 85.4
MD03G1184300 Malus domestica HOM05D005924 ORTHO05D007290 4.7e-58 228.0 148 77.0
MD11G1201100 Malus domestica HOM05D005924 ORTHO05D007290 8.8e-57 223.8 148 77.7
Prupe.4G242300 Prunus persica HOM05D005924 ORTHO05D007290 1.5e-56 223.0 149 76.5
Ciclev10009817m.g Citrus clementina HOM05D005924 ORTHO05D007290 1.9e-51 206.1 149 69.8
CiPaw.12G137600 Carya illinoinensis HOM05D005924 ORTHO05D007290 4.2e-51 204.9 148 70.9
QL08p004337 Quercus lobata HOM05D005924 ORTHO05D007290 5.5e-51 204.5 147 69.4
QL11p054318 Quercus lobata HOM05D005924 ORTHO05D007290 5.5e-51 204.5 147 69.4
Duzib213G0633 Durio zibethinus HOM05D005924 ORTHO05D007290 1.6e-50 203.0 148 70.9
COL.COLO4_09820 Corchorus olitorius HOM05D005924 ORTHO05D007290 4.7e-50 201.4 148 68.2
Haze_09815 Corylus avellana HOM05D005924 ORTHO05D007290 8.8e-49 197.2 148 69.6
Manes.15G060600 Manihot esculenta HOM05D005924 ORTHO05D007290 3.4e-48 195.3 145 69.7
Cfa020200 Carpinus fangiana HOM05D005924 ORTHO05D007290 4.4e-48 194.9 148 68.9
Dinv10325 Davidia involucrata HOM05D005924 ORTHO05D007290 7.5e-48 194.1 151 68.9
Cpa.g.sc12.154 Carica papaya HOM05D005924 ORTHO05D007290 9.8e-48 193.7 128 75.0
CiPaw.11G203100 Carya illinoinensis HOM05D005924 ORTHO05D007290 1.7e-47 193.0 148 70.3
TWI39G1162 Tripterygium wilfordii HOM05D005924 ORTHO05D007290 3.7e-47 191.8 153 68.0
Thecc.07G014800 Theobroma cacao HOM05D005924 ORTHO05D007290 4.8e-47 191.4 148 66.2
TWI38G0037 Tripterygium wilfordii HOM05D005924 ORTHO05D007290 8.3e-47 190.7 153 65.4
CANSAT11G0122 Cannabis sativa HOM05D005924 ORTHO05D007290 4.1e-46 188.3 151 69.5
GSVIVG01014668001 Vitis vinifera HOM05D005924 ORTHO05D007290 4.1e-46 188.3 145 67.6
Gohir.A04G006200 Gossypium hirsutum HOM05D005924 ORTHO05D007290 7.0e-46 187.6 148 66.9
Eucgr.F02053 Eucalyptus grandis HOM05D005924 ORTHO05D007290 1.2e-45 186.8 148 64.2
Gohir.D05G383300 Gossypium hirsutum HOM05D005924 ORTHO05D007290 1.0e-44 183.7 148 65.5
Actinidia30411 Actinidia chinensis HOM05D005924 ORTHO05D007290 1.7e-44 183.0 148 64.2
Ca_06392_v3 Cicer arietinum L. HOM05D005924 ORTHO05D007290 1.7e-44 183.0 144 66.0
CSS0025987 Camellia sinensis var. sinensis HOM05D005924 ORTHO05D007290 6.5e-44 181.0 151 66.9
CSS0049690 Camellia sinensis var. sinensis HOM05D005924 ORTHO05D007290 6.5e-44 181.0 151 66.9
TAR629G1982 Trochodendron aralioides HOM05D001060 ORTHO05D000905 8.6e-44 180.6 143 65.0
Hma1.2p1_0036F.1_g022440 Hydrangea macrophylla HOM05D005924 ORTHO05D007290 4.2e-43 178.3 148 64.9
Sabra16G0240500 Salix brachista HOM05D005924 ORTHO05D007290 4.2e-43 178.3 144 67.4
Dinv40851 Davidia involucrata HOM05D005924 ORTHO05D007290 1.2e-42 176.8 143 66.4
CsaV3_7G015090 Cucumis sativus L. HOM05D005924 ORTHO05D007290 1.6e-42 176.4 143 66.4
Medtr5g095700 Medicago truncatula HOM05D005924 ORTHO05D007290 2.1e-42 176.0 144 63.9
CSS0023895 Camellia sinensis var. sinensis HOM05D005924 ORTHO05D007290 2.8e-42 175.6 148 62.8
Oeu057095.1 Olea europaea HOM05D005924 ORTHO05D007290 3.6e-42 175.3 143 65.7
Sed0014433 Sechium edule HOM05D005924 ORTHO05D007290 4.7e-42 174.9 143 65.0
Lj6g0020710 Lotus japonicus HOM05D005924 ORTHO05D007290 6.1e-42 174.5 140 64.3
arahy.Tifrunner.gnm1.ann1.7P25LN Arachis hypogaea HOM05D005924 ORTHO05D007290 1.4e-41 173.3 143 63.6
arahy.Tifrunner.gnm1.ann1.RJW0MD Arachis hypogaea HOM05D005924 ORTHO05D007290 1.4e-41 173.3 143 63.6
Potri.001G367200 Populus trichocarpa HOM05D005924 ORTHO05D007290 2.3e-41 172.6 144 64.6
TPR.G8617 Trifolium pratense HOM05D005924 ORTHO05D007290 2.3e-41 172.6 146 65.8
ClCG09G021250 Citrullus lanatus HOM05D005924 ORTHO05D007290 3.0e-41 172.2 143 65.0
Nn1g03196 Nelumbo nucifera HOM05D005924 ORTHO05D007290 6.8e-41 171.0 146 60.3
Cc05_g14880 Coffea canephora HOM05D005924 ORTHO05D007290 1.2e-40 170.2 145 64.8
Oeu049375.1 Olea europaea HOM05D005924 ORTHO05D007290 1.2e-40 170.2 143 63.6
Lj8A178T78 Lonicera japonica HOM05D005924 ORTHO05D007290 2.6e-40 169.1 129 68.2
Lalb_Chr04g0247881 Lupinus albus HOM05D005924 ORTHO05D007290 2.6e-40 169.1 146 64.4
Thhalv10014966m.g Eutrema salsugineum HOM05D005924 ORTHO05D007290 3.4e-40 168.7 145 65.5
SGA_v2.0_scaffold8G04406 Striga asiatica HOM05D005924 ORTHO05D007290 4.4e-40 168.3 143 62.2
Phvul.008G278700 Phaseolus vulgaris HOM05D005924 ORTHO05D007290 5.7e-40 167.9 143 62.9
MELO3C024930.2 Cucumis melo HOM05D005924 ORTHO05D007290 7.5e-40 167.5 143 63.6
Migut.H01759 Erythranthe guttata HOM05D005924 ORTHO05D007290 3.7e-39 165.2 144 61.8
Actinidia26779 Actinidia chinensis HOM05D005924 ORTHO05D007290 4.9e-39 164.9 143 65.0
AT5G55640 Arabidopsis thaliana HOM05D005924 ORTHO05D007290 4.9e-39 164.9 146 62.3
Hund23125 Selenicereus undatus HOM05D005924 ORTHO05D007290 4.9e-39 164.9 148 62.8
Gorai.009G449900 Gossypium raimondii HOM05D005924 ORTHO05D007290 6.3e-39 164.5 181 53.0
PGR083G1797 Punica granatum HOM05D005924 ORTHO05D007290 8.3e-39 164.1 151 62.3
Psat2g007680 Pisum sativum HOM05D000001 ORTHO05D000003 1.1e-38 163.7 145 62.1
ECA246G3128 Erigeron canadensis HOM05D005924 ORTHO05D007290 1.4e-38 163.3 148 59.5
Carub.0008s1601 Capsella rubella HOM05D005924 ORTHO05D007290 3.1e-38 162.2 146 63.7
Rhsim04G0012900 Rhododendron simsii HOM05D005924 ORTHO05D007290 3.1e-38 162.2 144 62.5
Glyma.02G300000 Glycine max HOM05D005924 ORTHO05D007290 7.0e-38 161.0 129 65.9
Sp6g17560 Schrenkiella parvula HOM05D005924 ORTHO05D007290 9.2e-38 160.6 144 65.3
Aqoxy1G04252 Aquilegia oxysepala HOM05D005924 ORTHO05D007290 3.5e-37 158.7 149 56.4
Glyma.14G013900 Glycine max HOM05D005924 ORTHO05D007290 3.5e-37 158.7 143 62.9
vmacro09651 Vaccinium macrocarpon HOM05D005924 ORTHO05D007290 3.5e-37 158.7 146 60.3
VMungo0647G1823 Vigna mungo HOM05D005924 ORTHO05D007290 3.5e-37 158.7 143 61.5
Lsat_1_v5_gn_5_1420 Lactuca sativa HOM05D005924 ORTHO05D007290 7.8e-37 157.5 147 60.5
Sed0006731 Sechium edule HOM05D005924 ORTHO05D007290 1.7e-36 156.4 144 61.1
Oeu049390.1 Olea europaea HOM05D005924 ORTHO05D007290 2.3e-36 156.0 123 66.7
ATR0624G098 Amborella trichopoda HOM05D005924 ORTHO05D007290 2.9e-36 155.6 144 56.9
HanXRQChr08g0231191 Helianthus annuus HOM05D005924 ORTHO05D007290 2.9e-36 155.6 146 60.3
MSTRG.13019 Avicennia marina HOM05D005924 ORTHO05D007290 3.8e-36 155.2 145 58.6
MBI16_g07767_MAGBIO Magnolia biondii HOM05D005924 ORTHO05D007290 2.5e-35 152.5 125 62.4
PGSC0003DMG400022173 Solanum tuberosum HOM05D005924 ORTHO05D007290 2.5e-35 152.5 144 56.9
Actinidia37157 Actinidia chinensis HOM05D005924 ORTHO05D007290 3.3e-35 152.1 138 63.0
DCAR_018844 Daucus carota HOM05D005924 ORTHO05D007290 5.6e-35 151.4 135 61.5
AUR62036442 Chenopodium quinoa HOM05D005924 ORTHO05D007290 9.5e-35 150.6 144 59.7
PSO302G0279 Papaver somniferum HOM05D005924 ORTHO05D007290 1.6e-34 149.8 149 56.4
PSO210G6324 Papaver somniferum HOM05D005924 ORTHO05D007290 2.8e-34 149.1 149 56.4
Peaxi162Scf01164g00127 Petunia axillaris HOM05D005924 ORTHO05D007290 2.8e-34 149.1 131 61.1
AUR62017085 Chenopodium quinoa HOM05D005924 ORTHO05D007290 4.7e-34 148.3 143 60.8
AUR62036411 Chenopodium quinoa HOM05D005924 ORTHO05D007290 4.7e-34 148.3 144 59.7
AL8G31220 Arabidopsis lyrata HOM05D005924 ORTHO05D007290 1.0e-33 147.1 142 60.6
MBI19_g12833_MAGBIO Magnolia biondii HOM05D005924 ORTHO05D007290 1.8e-33 146.4 147 56.5
THA.LOC104811656 Tarenaya hassleriana HOM05D005924 ORTHO05D007290 1.8e-33 146.4 151 57.6
Solyc07g065480.3 Solanum lycopersicum HOM05D005924 ORTHO05D007290 3.0e-33 145.6 144 54.9
Sc16g0008020 Simmondsia chinensis HOM05D005924 ORTHO05D007290 4.0e-33 145.2 149 56.4
Nitab4.5_0000461g0270 Nicotiana tabacum HOM05D005924 ORTHO05D007290 5.2e-33 144.8 148 56.1
Sopen07g033690 Solanum pennellii HOM05D005924 ORTHO05D007290 5.2e-33 144.8 145 53.8
Nitab4.5_0014607g0010 Nicotiana tabacum HOM05D005924 ORTHO05D007290 6.8e-33 144.4 148 55.4
unitig_0.g996 Utricularia gibba HOM05D005924 ORTHO05D007290 8.9e-33 144.1 144 55.6
EL10Ac4g07594 Beta vulgaris HOM05D005924 ORTHO05D007290 1.5e-32 143.3 150 59.3
BcaC04g20212 Brassica carinata HOM05D005924 ORTHO05D007290 1.5e-32 143.3 127 62.2
C09p46620 Brassica napus HOM05D005924 ORTHO05D007290 1.5e-32 143.3 127 62.2
Aa31LG3G11590 Aethionema arabicum HOM05D005924 ORTHO05D007290 3.4e-32 142.1 153 56.2
BolC9t57514H Brassica oleracea HOM05D005924 ORTHO05D007290 4.4e-32 141.7 127 62.2
BcaB08g35925 Brassica carinata HOM05D005924 ORTHO05D007290 1.3e-31 140.2 125 66.4
CARHR268960 Cardamine hirsuta HOM05D005924 ORTHO05D007290 4.9e-31 138.3 125 63.2
CDE10G1040 Ceratophyllum demersum HOM05D005924 ORTHO05D007290 8.3e-31 137.5 145 52.4
CDE10G1343 Ceratophyllum demersum HOM05D005924 ORTHO05D007290 2.4e-30 136.0 136 53.7
Atru.BG.148.p Acer truncatum HOM05D005924 ORTHO05D007290 3.2e-30 135.6 89 75.3
BraA10t43385Z Brassica rapa HOM05D005924 ORTHO05D007290 3.2e-30 135.6 126 60.3
A10p12930 Brassica napus HOM05D005924 ORTHO05D007290 1.2e-29 133.7 126 60.3
Os03g0595200 Oryza sativa ssp. japonica HOM05D005924 ORTHO05D007290 2.0e-29 132.9 123 55.3
Manes.03G140800 Manihot esculenta HOM05D005924 ORTHO05D007290 4.6e-29 131.7 136 58.8
QL08p004311 Quercus lobata HOM05D005924 ORTHO05D007290 7.8e-29 131.0 124 55.6
Ah.06g181380 Amaranthus hybridus HOM05D000864 ORTHO05D002353 4.3e-27 125.2 121 53.7
C09p47070 Brassica napus HOM05D005924 ORTHO05D007290 7.3e-27 124.4 123 60.2
Zm00001eb049780 Zea mays HOM05D005924 ORTHO05D007290 2.3e-25 119.4 144 48.6
BcaC04g20171 Brassica carinata HOM05D005924 ORTHO05D007290 4.0e-25 118.6 88 70.5
HPP92_006039 Vanilla planifolia HOM05D005924 ORTHO05D007290 2.6e-24 115.9 116 56.0
SEGI_16066 Sequoiadendron giganteum HOM05D005924 ORTHO05D007290 9.8e-24 114.0 145 45.5
Pp3c5_24890 Physcomitrium patens HOM05D005924 ORTHO05D007290 1.2e-21 107.1 146 43.2
Pp3c6_3770 Physcomitrium patens HOM05D005924 ORTHO05D007290 1.9e-19 99.8 143 43.4
Mapoly0038s0106 Marchantia polymorpha HOM05D005924 ORTHO05D007290 9.5e-19 97.4 149 43.0
TAR626G0711 Trochodendron aralioides HOM05D005924 ORTHO05D007290 2.1e-18 96.3 130 45.4
arahy.Tifrunner.gnm1.ann1.HJ67LJ Arachis hypogaea HOM05D005924 ORTHO05D007290 6.2e-18 94.7 98 57.1
BolC9t57844H Brassica oleracea HOM05D005924 ORTHO05D007290 3.4e-16 89.0 103 57.3
BcaC04g19914 Brassica carinata HOM05D005924 ORTHO05D007290 1.3e-15 87.0 103 56.3
Os03g0412200 Oryza sativa ssp. japonica HOM05D005924 ORTHO05D007290 1.7e-15 86.7 111 49.5
SMO145G0101 Selaginella moellendorffii HOM05D005924 ORTHO05D007290 2.2e-15 86.3 154 42.9
Zm00001eb019850 Zea mays HOM05D005924 ORTHO05D007290 7.8e-13 77.8 121 41.3
C09p49910 Brassica napus HOM05D005924 ORTHO05D007290 1.5e-08 63.5 43 69.8
arahy.Tifrunner.gnm1.ann1.7WZH36 Arachis hypogaea HOM05D005924 ORTHO05D007290 2.6e-08 62.8 53 50.9
TAR371G0507 Trochodendron aralioides HOM05D005924 ORTHO05D007290 8.4e-07 57.8 89 38.2


User provided reference genes

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