Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_3g24060 Fragaria vesca HOM05D006454 ORTHO05D008024 3.2e-204 715.3 489 100.0
FAN11G0689 Fragaria x ananassa HOM05D006454 ORTHO05D008024 3.2e-204 715.3 489 100.0
FAN21G2064 Fragaria x ananassa HOM05D006454 ORTHO05D008024 3.3e-201 705.3 489 98.0
FAN25G3289 Fragaria x ananassa HOM05D006454 ORTHO05D008024 2.0e-198 696.0 489 98.6
FAN25G1123 Fragaria x ananassa HOM05D006454 ORTHO05D008024 2.6e-198 695.7 489 98.4
RcHm_v2.0_Chr5g0042641 Rosa chinensis HOM05D006454 ORTHO05D008024 6.2e-184 647.9 492 93.7
MD11G1204700 Malus domestica HOM05D006454 ORTHO05D008024 4.0e-154 548.9 495 83.8
Prupe.4G234400 Prunus persica HOM05D006454 ORTHO05D008024 5.9e-150 535.0 497 82.3
MD03G1188700 Malus domestica HOM05D006454 ORTHO05D008024 4.4e-137 492.3 496 77.6
QL08p005504 Quercus lobata HOM05D006454 ORTHO05D008024 8.3e-120 434.9 507 71.4
Haze_09788 Corylus avellana HOM05D006454 ORTHO05D008024 3.0e-117 426.4 521 71.6
Cfa020229 Carpinus fangiana HOM05D006454 ORTHO05D008024 8.9e-114 414.8 523 69.8
MELO3C024909.2 Cucumis melo HOM05D006454 ORTHO05D008024 3.5e-110 402.9 526 67.1
Carub.0008s1595 Capsella rubella HOM05D006454 ORTHO05D008024 2.1e-107 393.7 495 69.5
BcaC01g06383 Brassica carinata HOM05D006454 ORTHO05D008024 2.3e-106 390.2 481 70.1
CANSAT11G2145 Cannabis sativa HOM05D006454 ORTHO05D008024 2.3e-106 390.2 521 65.3
AL8G31150 Arabidopsis lyrata HOM05D006454 ORTHO05D008024 4.0e-106 389.4 489 68.9
C03p16380 Brassica napus HOM05D006454 ORTHO05D008024 6.8e-106 388.7 481 69.9
Thecc.07G022300 Theobroma cacao HOM05D006454 ORTHO05D008024 1.5e-105 387.5 516 67.6
A03p13940 Brassica napus HOM05D006454 ORTHO05D008024 3.4e-105 386.3 481 69.2
BraA03t10695Z Brassica rapa HOM05D006454 ORTHO05D008024 3.4e-105 386.3 481 69.2
Aa31LG3G11530 Aethionema arabicum HOM05D006454 ORTHO05D008024 1.3e-104 384.4 507 67.3
BolC3t14060H Brassica oleracea HOM05D006454 ORTHO05D008024 1.3e-104 384.4 491 68.2
Sp6g17500 Schrenkiella parvula HOM05D006454 ORTHO05D008024 1.7e-104 384.0 491 68.0
BcaB01g04358 Brassica carinata HOM05D006454 ORTHO05D008024 3.7e-104 382.9 486 68.5
MBI16_g11566_MAGBIO Magnolia biondii HOM05D006454 ORTHO05D008024 1.4e-103 380.9 503 69.2
TAR626G0559 Trochodendron aralioides HOM05D006454 ORTHO05D008024 1.9e-103 380.6 495 71.1
AT5G55580 Arabidopsis thaliana HOM05D006454 ORTHO05D008024 5.4e-103 379.0 485 68.0
Lalb_Chr04g0247971 Lupinus albus HOM05D006454 ORTHO05D008024 1.9e-100 370.5 467 70.9
ECA246G2030 Erigeron canadensis HOM05D006454 ORTHO05D008024 1.2e-99 367.9 479 65.6
Gohir.D13G138500 Gossypium hirsutum HOM05D006454 ORTHO05D008024 1.2e-99 367.9 480 67.7
Thhalv10013311m.g Eutrema salsugineum HOM05D006454 ORTHO05D008024 1.1e-98 364.8 492 56.3
Gorai.013G155100 Gossypium raimondii HOM05D006454 ORTHO05D008024 1.1e-98 364.8 480 67.5
Gohir.A13G134866 Gossypium hirsutum HOM05D006454 ORTHO05D008024 2.4e-98 363.6 480 67.1
DCAR_013215 Daucus carota HOM05D006454 ORTHO05D008024 3.1e-98 363.2 473 67.2
THA.LOC104813444 Tarenaya hassleriana HOM05D006454 ORTHO05D008024 8.9e-98 361.7 521 64.1
Phvul.008G275700 Phaseolus vulgaris HOM05D006454 ORTHO05D008024 1.5e-97 360.9 503 67.0
Potri.001G361800 Populus trichocarpa HOM05D006454 ORTHO05D008024 7.6e-97 358.6 499 65.7
Medtr5g094610 Medicago truncatula HOM05D006454 ORTHO05D008024 2.9e-96 356.7 504 66.5
Sabra11G0073300 Salix brachista HOM05D006454 ORTHO05D008024 2.4e-95 353.6 479 68.3
SalBow8G0989 Salvia bowleyana HOM05D006454 ORTHO05D008024 2.4e-95 353.6 503 66.2
Atru.chr2.3605 Acer truncatum HOM05D006454 ORTHO05D008024 9.3e-95 351.7 507 65.7
CsaV3_7G018450 Cucumis sativus L. HOM05D006454 ORTHO05D008024 2.1e-94 350.5 517 63.8
Manes.15G063200 Manihot esculenta HOM05D006454 ORTHO05D008024 1.0e-93 348.2 466 67.8
Sabra11G0078800 Salix brachista HOM05D006454 ORTHO05D008024 2.3e-93 347.1 479 67.6
Ciclev10008511m.g Citrus clementina HOM05D006454 ORTHO05D008024 3.0e-93 346.7 512 64.3
Migut.M01675 Erythranthe guttata HOM05D006454 ORTHO05D008024 1.9e-92 344.0 521 60.7
Nitab4.5_0000163g0310 Nicotiana tabacum HOM05D006454 ORTHO05D008024 3.3e-92 343.2 462 69.3
HanXRQChr08g0235811 Helianthus annuus HOM05D006454 ORTHO05D008024 4.3e-92 342.8 454 65.2
CiPaw.11G201000 Carya illinoinensis HOM05D006454 ORTHO05D008024 5.6e-92 342.4 371 79.8
CiPaw.12G136000 Carya illinoinensis HOM05D006454 ORTHO05D008024 5.6e-92 342.4 505 62.0
Sed0021870 Sechium edule HOM05D006454 ORTHO05D008024 7.3e-92 342.0 506 62.1
TWI39G0040 Tripterygium wilfordii HOM05D006454 ORTHO05D008024 1.3e-91 341.3 472 67.4
ClCG09G021120 Citrullus lanatus HOM05D006454 ORTHO05D008024 6.2e-91 339.0 525 62.7
CARHR268890 Cardamine hirsuta HOM05D006454 ORTHO05D008024 1.8e-90 337.4 338 85.8
LjContig00272g0005215 Lotus japonicus HOM05D006454 ORTHO05D008024 1.8e-90 337.4 490 65.7
arahy.Tifrunner.gnm1.ann1.AYWF3K Arachis hypogaea HOM05D006454 ORTHO05D008024 1.2e-89 334.7 445 68.3
TPR.G14154 Trifolium pratense HOM05D006454 ORTHO05D008024 1.2e-89 334.7 460 68.3
Peaxi162Scf00955g00214 Petunia axillaris HOM05D006454 ORTHO05D008024 2.6e-89 333.6 493 65.9
Aqoxy4G02215 Aquilegia oxysepala HOM05D006454 ORTHO05D008024 1.3e-88 331.3 477 64.4
Eucgr.F03524 Eucalyptus grandis HOM05D006454 ORTHO05D008024 1.3e-88 331.3 466 65.7
arahy.Tifrunner.gnm1.ann1.IBL7LR Arachis hypogaea HOM05D006454 ORTHO05D008024 1.7e-88 330.9 443 68.2
CSS0002313 Camellia sinensis var. sinensis HOM05D006454 ORTHO05D000036 1.9e-87 327.4 493 62.5
Glyma.14G015800 Glycine max HOM05D006454 ORTHO05D008024 2.4e-87 327.0 496 63.3
Cc05_g14700 Coffea canephora HOM05D006454 ORTHO05D008024 3.2e-87 326.6 503 62.4
Solyc12g015640.2 Solanum lycopersicum HOM05D006454 ORTHO05D008024 5.4e-87 325.9 451 69.4
Ca_06374_v3 Cicer arietinum L. HOM05D006454 ORTHO05D000136 1.2e-86 324.7 398 74.9
CAN.G1239.14 Capsicum annuum HOM05D006454 ORTHO05D008024 1.6e-86 324.3 462 67.5
Actinidia05032 Actinidia chinensis HOM05D006454 ORTHO05D008024 2.7e-86 323.6 508 63.4
Oeu054328.1 Olea europaea HOM05D006454 ORTHO05D008024 2.3e-85 320.5 491 62.1
Sopen12g007540 Solanum pennellii HOM05D006454 ORTHO05D008024 3.9e-85 319.7 457 68.1
Glyma.02G297900 Glycine max HOM05D006454 ORTHO05D008024 2.1e-83 313.9 493 63.1
Lsat_1_v5_gn_5_8060 Lactuca sativa HOM05D006454 ORTHO05D008024 3.6e-83 313.2 456 65.6
Nitab4.5_0002517g0040 Nicotiana tabacum HOM05D006454 ORTHO05D008024 6.2e-83 312.4 457 66.1
CDE12G0728 Ceratophyllum demersum HOM05D006454 ORTHO05D008024 8.1e-83 312.0 502 62.2
VMungo0647G1066 Vigna mungo HOM05D006454 ORTHO05D008024 3.4e-81 306.6 495 62.2
PSO675G2716 Papaver somniferum HOM05D006454 ORTHO05D008024 7.6e-81 305.4 516 59.5
MSTRG.6985 Avicennia marina HOM05D006454 ORTHO05D008024 1.7e-80 304.3 479 63.0
PSO541G2941 Papaver somniferum HOM05D006454 ORTHO05D008024 2.9e-80 303.5 514 59.7
ATR1149G086 Amborella trichopoda HOM05D006454 ORTHO05D008024 1.1e-79 301.6 504 59.9
Lj1A885G30 Lonicera japonica HOM05D006454 ORTHO05D008024 3.2e-79 300.1 375 75.2
Psat2g008800 Pisum sativum HOM05D006454 ORTHO05D008024 1.3e-77 294.7 472 61.9
vmacro11560 Vaccinium macrocarpon HOM05D006454 ORTHO05D008024 1.3e-77 294.7 337 81.3
PGR031G1939 Punica granatum HOM05D006454 ORTHO05D008024 7.4e-76 288.9 518 56.0
Rhsim06G0226800 Rhododendron simsii HOM05D006454 ORTHO05D008024 1.8e-74 284.3 521 56.2
AUR62017060 Chenopodium quinoa HOM05D006454 ORTHO05D008024 9.0e-74 282.0 444 61.9
GSVIVG01037780001 Vitis vinifera HOM05D006454 ORTHO05D008024 2.0e-73 280.8 447 61.7
AUR62040658 Chenopodium quinoa HOM05D006454 ORTHO05D008024 1.0e-72 278.5 466 57.7
Dinv40835 Davidia involucrata HOM05D006454 ORTHO05D008024 1.3e-72 278.1 292 89.0
COL.COLO4_09787 Corchorus olitorius HOM05D006454 ORTHO05D008024 4.9e-72 276.2 465 63.7
SGA_v2.0_scaffold171G38887 Striga asiatica HOM05D006454 ORTHO05D008024 1.9e-71 274.2 482 61.0
Ah.04g166440 Amaranthus hybridus HOM05D006454 ORTHO05D008024 5.3e-66 256.1 466 58.4
EL10Ac4g07613 Beta vulgaris HOM05D006454 ORTHO05D008024 6.9e-66 255.8 450 60.2
HPP92_007883 Vanilla planifolia HOM05D006454 ORTHO05D008024 1.6e-62 244.6 477 56.2
PGSC0003DMG401029813 Solanum tuberosum HOM05D006454 ORTHO05D008024 3.3e-60 236.9 292 84.9
Hund01917 Selenicereus undatus HOM05D006454 ORTHO05D008024 2.6e-57 227.3 336 71.7
Sc16g0003560 Simmondsia chinensis HOM05D006454 ORTHO05D008024 1.1e-55 221.9 383 61.6
CAN.G489.2 Capsicum annuum HOM05D006454 ORTHO05D008024 1.1e-52 211.8 303 59.4
Cpa.g.sc12.193 Carica papaya HOM05D006454 ORTHO05D008024 2.0e-52 211.1 265 50.6
Actinidia00093 Actinidia chinensis HOM05D006454 ORTHO05D008024 6.3e-51 206.1 449 55.7
Oeu031063.1 Olea europaea HOM05D006454 ORTHO05D008024 6.9e-50 202.6 292 77.4
Prupe.4G234100 Prunus persica HOM05D006454 ORTHO05D008024 2.6e-49 200.7 235 88.5
BcaNung06723 Brassica carinata HOM05D000081 ORTHO05D008024 4.7e-46 189.9 322 50.0
Hund01916 Selenicereus undatus HOM05D006454 ORTHO05D008024 2.2e-43 181.0 458 33.2
Cpa.g.sc12.192 Carica papaya HOM05D006454 ORTHO05D008024 9.1e-42 175.6 119 87.4
Os07g0583200 Oryza sativa ssp. japonica HOM05D006454 ORTHO05D008024 1.6e-41 174.9 352 60.5
HPP92_007898 Vanilla planifolia HOM05D006454 ORTHO05D008024 2.6e-41 174.1 290 72.1
Zm00001eb107900 Zea mays HOM05D006454 ORTHO05D008024 2.2e-40 171.0 470 52.1
Nn1g07440 Nelumbo nucifera HOM05D006454 ORTHO05D008024 6.3e-35 152.9 109 85.3
unitig_899.g15274 Utricularia gibba HOM05D006454 ORTHO05D008024 9.4e-31 139.0 351 59.0
BolC2t07758H Brassica oleracea HOM05D006454 ORTHO05D008024 6.1e-30 136.3 149 53.7
SEGI_11937 Sequoiadendron giganteum HOM05D047912 ORTHO05D008024 4.0e-21 107.1 323 52.9
Mapoly0042s0040 Marchantia polymorpha HOM05D006454 ORTHO05D008024 3.4e-20 104.0 410 45.9
Pp3c7_3780 Physcomitrium patens HOM05D006454 ORTHO05D008024 3.4e-20 104.0 336 54.2
vmacro10144 Vaccinium macrocarpon HOM05D006454 ORTHO05D008024 1.7e-19 101.7 330 29.4
BcaNung06724 Brassica carinata HOM05D006454 ORTHO05D008024 7.0e-18 96.3 54 81.5
Pp3c11_22990 Physcomitrium patens HOM05D006454 ORTHO05D008024 2.0e-17 94.7 336 50.0
Oeu034554.1 Olea europaea HOM05D006454 ORTHO05D008024 5.7e-12 76.6 87 49.4
AagrBONN_evm.TU.Sc2ySwM_117.1902 Anthoceros agrestis HOM05D006454 ORTHO05D008024 2.9e-11 74.3 328 24.1
MCO01G181 Micromonas commoda HOM05D006454 ORTHO05D008024 7.0e-10 69.7 120 46.7
BcaNung06726 Brassica carinata HOM05D006454 ORTHO05D008024 1.0e-08 65.9 151 33.1
PRCOL_00000825 Prasinoderma coloniale HOM05D006454 ORTHO05D008024 2.3e-08 64.7 118 29.7


User provided reference genes

Program Settings