Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_3g42280 Fragaria vesca HOM05D006736 ORTHO05D008459 2.0e-55 218.8 107 100.0
FAN11G0661 Fragaria x ananassa HOM05D006736 ORTHO05D008459 2.0e-55 218.8 107 100.0
FAN25G3397 Fragaria x ananassa HOM05D006736 ORTHO05D008459 2.0e-55 218.8 107 100.0
FAN16G2066 Fragaria x ananassa HOM05D002691 ORTHO05D003304 6.0e-55 217.2 107 99.1
FAN21G1732 Fragaria x ananassa HOM05D006736 ORTHO05D008459 1.3e-49 199.5 98 98.0
RcHm_v2.0_Chr5g0075611 Rosa chinensis HOM05D006736 ORTHO05D008459 1.1e-43 179.9 107 84.1
Prupe.6G028200 Prunus persica HOM05D006736 ORTHO05D008459 7.1e-32 140.6 112 67.0
Cfa021889 Carpinus fangiana HOM05D006736 ORTHO05D008459 4.6e-23 111.3 109 54.1
Haze_09864 Corylus avellana HOM05D004577 ORTHO05D005062 6.0e-23 110.9 95 58.9
QL08p003180 Quercus lobata HOM05D006736 ORTHO05D008459 3.9e-22 108.2 110 55.5
CiPaw.11G206800 Carya illinoinensis HOM05D006736 ORTHO05D008459 7.4e-21 104.0 115 53.9
Duzib268G0079 Durio zibethinus HOM05D006736 ORTHO05D008459 4.5e-18 94.7 112 49.1
Thecc.07G008000 Theobroma cacao HOM05D006736 ORTHO05D008459 2.2e-17 92.4 110 47.3
Medtr3g461010 Medicago truncatula HOM05D006736 ORTHO05D008459 1.4e-16 89.7 101 53.5
Duzib170G0862 Durio zibethinus HOM05D006736 ORTHO05D008459 1.6e-15 86.3 113 46.9
Eucgr.F02027 Eucalyptus grandis HOM05D006736 ORTHO05D008459 2.7e-15 85.5 93 50.5
COL.COLO4_07740 Corchorus olitorius HOM05D006736 ORTHO05D008459 4.6e-15 84.7 96 50.0
Phvul.006G059230 Phaseolus vulgaris HOM05D006736 ORTHO05D008459 7.9e-15 84.0 90 53.3
TPR.G17947 Trifolium pratense HOM05D006736 ORTHO05D008459 1.8e-14 82.8 95 55.8
Lalb_Chr20g0114121 Lupinus albus HOM05D006736 ORTHO05D008459 2.3e-14 82.4 111 45.9
VMungo0540G0896 Vigna mungo HOM05D006736 ORTHO05D008459 3.9e-14 81.6 92 55.4
Psat5g166560 Pisum sativum HOM05D006736 ORTHO05D008459 1.1e-13 80.1 113 48.7
MELO3C024968.2 Cucumis melo HOM05D006736 ORTHO05D008459 1.9e-13 79.3 74 54.1
TAR624G0983 Trochodendron aralioides HOM05D006736 ORTHO05D008459 3.3e-13 78.6 99 45.5
Sed0023265 Sechium edule HOM05D006736 ORTHO05D008459 7.4e-13 77.4 68 61.8
ClCG10G003900 Citrullus lanatus HOM05D006736 ORTHO05D008459 9.6e-13 77.0 98 43.9
ClCG10G004060 Citrullus lanatus HOM05D006736 ORTHO05D008459 9.6e-13 77.0 98 43.9
CsaV3_7G023850 Cucumis sativus L. HOM05D006736 ORTHO05D008459 1.6e-12 76.3 72 54.2
Lj6g0005510 Lotus japonicus HOM05D006736 ORTHO05D008459 1.6e-12 76.3 73 57.5
Oeu036994.1 Olea europaea HOM05D006736 ORTHO05D008459 2.1e-12 75.9 95 47.4
ClCG09G021530 Citrullus lanatus HOM05D006736 ORTHO05D008459 2.8e-12 75.5 74 52.7
Sed0014616 Sechium edule HOM05D006736 ORTHO05D008459 4.8e-12 74.7 94 41.5
Glyma.14G011700 Glycine max HOM05D006736 ORTHO05D008459 6.2e-12 74.3 115 40.9
Sabra16G0244100 Salix brachista HOM05D006736 ORTHO05D008459 8.2e-12 73.9 111 44.1
GSVIVG01014741001 Vitis vinifera HOM05D006736 ORTHO05D008459 1.1e-11 73.6 103 48.5
Glyma.18G074500 Glycine max HOM05D006736 ORTHO05D008459 1.8e-11 72.8 122 42.6
Lalb_Chr15g0082301 Lupinus albus HOM05D006736 ORTHO05D008459 1.8e-11 72.8 106 45.3
Glyma.08G332400 Glycine max HOM05D006736 ORTHO05D008459 2.4e-11 72.4 117 44.4
Potri.001G371400 Populus trichocarpa HOM05D006736 ORTHO05D008459 3.1e-11 72.0 85 47.1
Gohir.A01G093700 Gossypium hirsutum HOM05D006736 ORTHO05D008459 4.0e-11 71.6 89 44.9
Cpa.g.sc12.109 Carica papaya HOM05D006736 ORTHO05D008459 5.3e-11 71.2 70 57.1
MELO3C014070.2 Cucumis melo HOM05D006736 ORTHO05D008459 6.9e-11 70.9 87 41.4
Ciclev10010675m.g Citrus clementina HOM05D006736 ORTHO05D008459 1.2e-10 70.1 91 49.5
Aqoxy4G01886 Aquilegia oxysepala HOM05D006736 ORTHO05D008459 2.0e-10 69.3 109 45.0
CsaV3_3G003890 Cucumis sativus L. HOM05D006736 ORTHO05D008459 2.6e-10 68.9 98 39.8
Gohir.D01G078200 Gossypium hirsutum HOM05D006736 ORTHO05D008459 3.4e-10 68.6 89 42.7
Gorai.002G102800 Gossypium raimondii HOM05D006736 ORTHO05D008459 3.4e-10 68.6 89 42.7
MD03G1035000 Malus domestica HOM05D006736 ORTHO05D008459 3.4e-10 68.6 72 59.7
QL08p003109 Quercus lobata HOM05D006736 ORTHO05D008459 3.4e-10 68.6 80 46.2
Sabra11G0088600 Salix brachista HOM05D006736 ORTHO05D008459 3.4e-10 68.6 64 62.5
Gohir.A13G130900 Gossypium hirsutum HOM05D006736 ORTHO05D008459 1.3e-09 66.6 107 43.0
TWI38G1827 Tripterygium wilfordii HOM05D006736 ORTHO05D008459 1.3e-09 66.6 50 66.0
Atru.chr2.3834 Acer truncatum HOM05D006736 ORTHO05D008459 1.7e-09 66.2 90 48.9
LjContig00081g0022969 Lotus japonicus HOM05D006736 ORTHO05D008459 1.7e-09 66.2 105 41.9
Carub.0008s1632 Capsella rubella HOM05D006736 ORTHO05D008459 2.2e-09 65.9 68 55.9
SGA_v2.0_scaffold49G18393 Striga asiatica HOM05D006736 ORTHO05D008459 2.2e-09 65.9 113 39.8
Thhalv10015819m.g Eutrema salsugineum HOM05D006736 ORTHO05D008459 2.9e-09 65.5 57 57.9
AT5G55980 Arabidopsis thaliana HOM05D006736 ORTHO05D008459 3.8e-09 65.1 72 50.0
CARHR269350 Cardamine hirsuta HOM05D006736 ORTHO05D008459 3.8e-09 65.1 66 59.1
Sp6g17830 Schrenkiella parvula HOM05D006736 ORTHO05D008459 3.8e-09 65.1 56 58.9
Rhsim06G0178800 Rhododendron simsii HOM05D006736 ORTHO05D008459 4.9e-09 64.7 67 47.8
TWI39G1297 Tripterygium wilfordii HOM05D006736 ORTHO05D008459 4.9e-09 64.7 70 55.7
BcaB08g35964 Brassica carinata HOM05D006736 ORTHO05D008459 6.5e-09 64.3 89 47.2
BcaC04g20175 Brassica carinata HOM05D006736 ORTHO05D008459 6.5e-09 64.3 89 44.9
A10p13210 Brassica napus HOM05D006736 ORTHO05D008459 6.5e-09 64.3 57 57.9
BraA10t43419Z Brassica rapa HOM05D006736 ORTHO05D008459 6.5e-09 64.3 57 57.9
Gohir.D13G134200 Gossypium hirsutum HOM05D006736 ORTHO05D008459 8.4e-09 63.9 66 53.0
Gorai.013G150500 Gossypium raimondii HOM05D006736 ORTHO05D008459 8.4e-09 63.9 66 53.0
Sc03g0011540 Simmondsia chinensis HOM05D006736 ORTHO05D008459 8.4e-09 63.9 94 41.5
AL8G31560 Arabidopsis lyrata HOM05D006736 ORTHO05D008459 1.1e-08 63.5 67 53.7
Sopen07g023750 Solanum pennellii HOM05D006736 ORTHO05D008459 1.1e-08 63.5 90 46.7
Manes.01G003400 Manihot esculenta HOM05D006736 ORTHO05D008459 1.4e-08 63.2 94 44.7
Peaxi162Scf00047g02119 Petunia axillaris HOM05D006736 ORTHO05D008459 1.9e-08 62.8 94 43.6
Aa31LG3G11890 Aethionema arabicum HOM05D006736 ORTHO05D008459 3.2e-08 62.0 67 58.2
Hma1.2p1_0599F.1_g186970 Hydrangea macrophylla HOM05D006736 ORTHO05D008459 4.2e-08 61.6 84 45.2
Manes.05G200400 Manihot esculenta HOM05D006736 ORTHO05D008459 4.2e-08 61.6 72 51.4
C09p46970 Brassica napus HOM05D006736 ORTHO05D008459 5.5e-08 61.2 89 43.8
BolC9t57545H Brassica oleracea HOM05D006736 ORTHO05D008459 5.5e-08 61.2 89 43.8
DCAR_008749 Daucus carota HOM05D006736 ORTHO05D008459 9.3e-08 60.5 89 40.4
Sopen12g002170 Solanum pennellii HOM05D006736 ORTHO05D008459 9.3e-08 60.5 90 44.4
BcaB01g04378 Brassica carinata HOM05D006736 ORTHO05D008459 1.2e-07 60.1 57 54.4
Solyc12g006220.3 Solanum lycopersicum HOM05D006736 ORTHO05D008459 1.2e-07 60.1 90 44.4
Solyc07g045200.1 Solanum lycopersicum HOM05D006736 ORTHO05D008459 1.6e-07 59.7 55 56.4
Phvul.008G281200 Phaseolus vulgaris HOM05D006736 ORTHO05D008459 2.1e-07 59.3 89 42.7
ECA236G2479 Erigeron canadensis HOM05D006736 ORTHO05D008459 2.7e-07 58.9 52 57.7
EL10Ac4g07540 Beta vulgaris HOM05D006736 ORTHO05D008459 4.6e-07 58.2 103 39.8
CSS0010283 Camellia sinensis var. sinensis HOM05D006736 ORTHO05D008459 6.0e-07 57.8 85 42.4
Migut.H01277 Erythranthe guttata HOM05D006736 ORTHO05D008459 6.0e-07 57.8 58 58.6
Lsat_1_v5_gn_5_122340 Lactuca sativa HOM05D006736 ORTHO05D008459 6.0e-07 57.8 78 46.2
Ah.06g181490 Amaranthus hybridus HOM05D006736 ORTHO05D008459 1.3e-06 56.6 99 39.4
AT3G13227 Arabidopsis thaliana HOM05D006736 ORTHO05D008459 1.8e-06 56.2 59 55.9
MBI14_g39127_MAGBIO Magnolia biondii HOM05D006736 ORTHO05D008459 1.8e-06 56.2 62 54.8
Migut.M00067 Erythranthe guttata HOM05D006736 ORTHO05D008459 2.3e-06 55.8 109 34.9
Peaxi162Scf01164g00020 Petunia axillaris HOM05D006736 ORTHO05D008459 2.3e-06 55.8 85 45.9
Sp3g11420 Schrenkiella parvula HOM05D006736 ORTHO05D008459 3.0e-06 55.5 107 39.3
ECA234G2793 Erigeron canadensis HOM05D006736 ORTHO05D008459 5.1e-06 54.7 81 39.5
Oeu019702.1 Olea europaea HOM05D006736 ORTHO05D008459 5.1e-06 54.7 43 65.1
CARHR087850 Cardamine hirsuta HOM05D006736 ORTHO05D008459 8.7e-06 53.9 112 37.5
Dinv15222 Davidia involucrata HOM05D007247 ORTHO05D009208 8.7e-06 53.9 71 46.5
FAN12G2765 Fragaria x ananassa HOM05D007247 ORTHO05D009208 8.7e-06 53.9 46 54.3


User provided reference genes

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