Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN11G0660 Fragaria x ananassa HOM05D004277 ORTHO05D005148 0.0e+00 2641.3 1361 100.0
FAN16G3091 Fragaria x ananassa HOM05D004277 ORTHO05D005148 0.0e+00 2617.0 1361 99.1
FvH4_3g15310 Fragaria vesca HOM05D004277 ORTHO05D005148 0.0e+00 2605.9 1361 99.0
FAN21G0666 Fragaria x ananassa HOM05D004277 ORTHO05D005148 0.0e+00 2569.7 1361 97.7
RcHm_v2.0_Chr5g0025751 Rosa chinensis HOM05D004277 ORTHO05D005148 0.0e+00 2436.4 1351 92.7
Prupe.4G136200 Prunus persica HOM05D004277 ORTHO05D005148 0.0e+00 1894.0 1193 81.9
CANSAT80G1893 Cannabis sativa HOM05D004277 ORTHO05D005148 0.0e+00 1812.3 1374 69.4
GSVIVG01036797001 Vitis vinifera HOM05D004277 ORTHO05D005148 0.0e+00 1782.3 1401 66.5
CiPaw.11G062700 Carya illinoinensis HOM05D004277 ORTHO05D005148 0.0e+00 1721.8 1412 64.8
QL12p004433 Quercus lobata HOM05D004277 ORTHO05D005148 0.0e+00 1718.4 1327 68.1
Atru.chr1.126 Acer truncatum HOM05D004277 ORTHO05D005148 0.0e+00 1696.4 1367 65.6
Gohir.D08G252532 Gossypium hirsutum HOM05D004277 ORTHO05D005148 0.0e+00 1666.7 1360 64.7
Gohir.A08G232300 Gossypium hirsutum HOM05D004277 ORTHO05D005148 0.0e+00 1652.5 1358 64.4
COL.COLO4_05147 Corchorus olitorius HOM05D004277 ORTHO05D004634 0.0e+00 1629.8 1394 62.3
Potri.007G067700 Populus trichocarpa HOM05D004277 ORTHO05D005148 0.0e+00 1628.6 1365 63.2
vmacro11705 Vaccinium macrocarpon HOM05D004277 ORTHO05D005148 0.0e+00 1626.7 1426 61.2
TWI38G1370 Tripterygium wilfordii HOM05D004277 ORTHO05D005148 0.0e+00 1610.1 1383 61.2
Actinidia12771 Actinidia chinensis HOM05D004277 ORTHO05D005148 0.0e+00 1592.8 1342 62.8
CsaV3_7G022870 Cucumis sativus L. HOM05D004277 ORTHO05D005148 0.0e+00 1582.4 1360 61.8
Ciclev10007189m.g Citrus clementina HOM05D004277 ORTHO05D005148 0.0e+00 1581.6 1359 61.9
CSS0042003 Camellia sinensis var. sinensis HOM05D004277 ORTHO05D005148 0.0e+00 1578.5 1381 62.0
Sabra07G0053700 Salix brachista HOM05D004277 ORTHO05D005148 0.0e+00 1573.9 1373 61.9
Sed0006880 Sechium edule HOM05D004277 ORTHO05D005148 0.0e+00 1552.7 1367 60.3
Nn3g21002 Nelumbo nucifera HOM05D004277 ORTHO05D005148 0.0e+00 1547.3 1386 59.4
Aqoxy7G03893 Aquilegia oxysepala HOM05D004277 ORTHO05D005148 0.0e+00 1546.2 1392 59.4
Oeu019710.1 Olea europaea HOM05D004277 ORTHO05D005148 0.0e+00 1535.4 1382 58.8
PGR031G1415 Punica granatum HOM05D004277 ORTHO05D005148 0.0e+00 1530.8 1365 59.6
Manes.03G176500 Manihot esculenta HOM05D004277 ORTHO05D005148 0.0e+00 1529.6 1387 59.6
Eucgr.F04450 Eucalyptus grandis HOM05D004277 ORTHO05D005148 0.0e+00 1525.4 1384 58.8
Rhsim06G0241600 Rhododendron simsii HOM05D004277 ORTHO05D005148 0.0e+00 1524.6 1410 59.3
ClCG09G022670 Citrullus lanatus HOM05D004277 ORTHO05D005148 0.0e+00 1514.6 1461 57.3
MELO3C012612.2 Cucumis melo HOM05D004277 ORTHO05D005148 0.0e+00 1506.5 1370 59.3
Gorai.004G269300 Gossypium raimondii HOM05D004277 ORTHO05D005148 0.0e+00 1506.1 1369 60.1
Ca_12388_v3 Cicer arietinum L. HOM05D004277 ORTHO05D005148 0.0e+00 1499.6 1405 57.9
Psat6g100160 Pisum sativum HOM05D004277 ORTHO05D005148 0.0e+00 1495.7 1379 57.9
Lj2g0013005 Lotus japonicus HOM05D004277 ORTHO05D005148 0.0e+00 1494.2 1375 58.5
Glyma.09G284900 Glycine max HOM05D004277 ORTHO05D005148 0.0e+00 1492.2 1367 59.5
Ca_12380_v3 Cicer arietinum L. HOM05D004277 ORTHO05D005148 0.0e+00 1491.1 1387 58.3
AL2G39660 Arabidopsis lyrata HOM05D004277 ORTHO05D005148 0.0e+00 1483.8 1367 58.5
THA.LOC104812364 Tarenaya hassleriana HOM05D004277 ORTHO05D005148 0.0e+00 1483.8 1369 58.4
AT1G79190 Arabidopsis thaliana HOM05D004277 ORTHO05D005148 0.0e+00 1479.9 1366 58.1
PSO210G0403 Papaver somniferum HOM05D004277 ORTHO05D005148 0.0e+00 1479.2 1383 57.5
Thhalv10018016m.g Eutrema salsugineum HOM05D004277 ORTHO05D005148 0.0e+00 1470.3 1369 57.4
MD05G1224200 Malus domestica HOM05D004277 ORTHO05D005148 0.0e+00 1466.4 993 76.5
Aa31LG4G1820 Aethionema arabicum HOM05D004277 ORTHO05D005148 0.0e+00 1464.5 1377 56.7
Lalb_Chr18g0046601 Lupinus albus HOM05D004277 ORTHO05D005148 0.0e+00 1458.0 1342 58.8
PSO210G1337 Papaver somniferum HOM05D004277 ORTHO05D005148 0.0e+00 1454.5 1381 56.9
Medtr1g038850 Medicago truncatula HOM05D004277 ORTHO05D005148 0.0e+00 1451.0 1371 57.5
Lj2A15G78 Lonicera japonica HOM05D004277 ORTHO05D005148 0.0e+00 1438.3 1341 59.1
Phvul.003G002100 Phaseolus vulgaris HOM05D004277 ORTHO05D005148 0.0e+00 1437.9 1380 57.5
Sc06g0002790 Simmondsia chinensis HOM05D004277 ORTHO05D005148 0.0e+00 1427.9 1364 57.0
AUR62006227 Chenopodium quinoa HOM05D004277 ORTHO05D005148 0.0e+00 1425.6 1381 55.6
Solyc12g017280.2 Solanum lycopersicum HOM05D004277 ORTHO05D005148 0.0e+00 1424.8 1408 54.8
BcaB05g25178 Brassica carinata HOM05D004277 ORTHO05D005148 0.0e+00 1424.5 1366 57.3
Cc05_g16300 Coffea canephora HOM05D004277 ORTHO05D005148 0.0e+00 1420.6 1371 56.2
Migut.H01674 Erythranthe guttata HOM05D004277 ORTHO05D005148 0.0e+00 1419.4 1371 55.8
SalBow7G4120 Salvia bowleyana HOM05D004277 ORTHO05D005148 0.0e+00 1416.4 1415 54.5
BraA02t07267Z Brassica rapa HOM05D004277 ORTHO05D005148 0.0e+00 1414.4 1354 57.2
Peaxi162Scf00006g01510 Petunia axillaris HOM05D004277 ORTHO05D005148 0.0e+00 1414.4 1381 56.7
HanXRQChr03g0078241 Helianthus annuus HOM05D004277 ORTHO05D005148 0.0e+00 1408.7 1352 56.0
ECA240G2290 Erigeron canadensis HOM05D004277 ORTHO05D005148 0.0e+00 1408.3 1345 57.3
BcaC03g15873 Brassica carinata HOM05D004277 ORTHO05D005148 0.0e+00 1407.9 1357 57.1
SGA_v2.0_scaffold239G44031 Striga asiatica HOM05D004277 ORTHO05D005148 0.0e+00 1406.3 1408 53.6
BolC2t09641H Brassica oleracea HOM05D004277 ORTHO05D005148 0.0e+00 1402.9 1359 57.0
A02p22660 Brassica napus HOM05D004277 ORTHO05D005148 0.0e+00 1402.1 1357 56.6
C02p36270 Brassica napus HOM05D004277 ORTHO05D005148 0.0e+00 1398.6 1357 56.7
EL10Ac2g03265 Beta vulgaris HOM05D004277 ORTHO05D005148 0.0e+00 1390.9 1371 55.0
Lsat_1_v5_gn_7_70840 Lactuca sativa HOM05D004277 ORTHO05D005148 0.0e+00 1386.3 1365 57.3
Peaxi162Scf00078g01336 Petunia axillaris HOM05D004277 ORTHO05D005148 0.0e+00 1379.4 1483 53.3
Ah.02g131470 Amaranthus hybridus HOM05D004277 ORTHO05D005148 0.0e+00 1375.5 1365 55.1
VMungo0251G3136 Vigna mungo HOM05D004277 ORTHO05D005148 0.0e+00 1372.5 1372 55.4
arahy.Tifrunner.gnm1.ann1.J7P8I0 Arachis hypogaea HOM05D004277 ORTHO05D005148 0.0e+00 1367.8 1550 50.9
MBI02_g15959_MAGBIO Magnolia biondii HOM05D004277 ORTHO05D005148 0.0e+00 1333.5 1354 54.9
Dinv19596 Davidia involucrata HOM05D004277 ORTHO05D005148 0.0e+00 1309.3 1143 62.6
ATR0763G037 Amborella trichopoda HOM05D004277 ORTHO05D005148 0.0e+00 1288.5 1375 50.8
arahy.Tifrunner.gnm1.ann1.3DGA3E Arachis hypogaea HOM05D004277 ORTHO05D005148 0.0e+00 1288.5 1596 48.4
AUR62036983 Chenopodium quinoa HOM05D004277 ORTHO05D005148 0.0e+00 1281.2 1380 52.6
DCAR_019921 Daucus carota HOM05D004277 ORTHO05D005148 0.0e+00 1246.1 1383 51.3
Haze_07825 Corylus avellana HOM05D004277 ORTHO05D005148 0.0e+00 1134.0 1011 60.6
Zm00001eb224850 Zea mays HOM05D004277 ORTHO05D005148 0.0e+00 1131.3 1366 46.5
Sp5g34240 Schrenkiella parvula HOM05D004277 ORTHO05D005148 0.0e+00 1124.8 1037 57.7
Nitab4.5_0000388g0130 Nicotiana tabacum HOM05D004277 ORTHO05D005148 0.0e+00 1094.0 1123 54.5
CDE05G2591 Ceratophyllum demersum HOM05D004277 ORTHO05D005148 9.9e-296 1020.8 1156 48.1
Nitab4.5_0009962g0010 Nicotiana tabacum HOM05D004277 ORTHO05D005148 8.7e-284 981.1 1032 52.8
TAR626G0647 Trochodendron aralioides HOM05D004277 ORTHO05D005148 1.5e-275 953.7 843 59.5
unitig_8.g4753 Utricularia gibba HOM05D004277 ORTHO05D005148 1.3e-268 930.6 1354 41.1
CARHR072840 Cardamine hirsuta HOM05D004277 ORTHO05D005148 1.9e-267 926.8 832 59.5
Carub.0002s2606 Capsella rubella HOM05D004277 ORTHO05D005148 1.8e-249 867.1 745 61.7
Hma1.2p1_1054F.1_g252470 Hydrangea macrophylla HOM05D004277 ORTHO05D005148 1.6e-245 854.0 717 61.6
Sopen12g008100 Solanum pennellii HOM05D004277 ORTHO05D005148 9.1e-233 811.6 821 53.1
HPP92_021082 Vanilla planifolia HOM05D004277 ORTHO05D005148 8.3e-210 735.3 1341 37.7
Pp3c22_19900 Physcomitrium patens HOM05D004277 ORTHO05D005148 3.2e-185 653.7 1433 32.4
Mapoly0151s0022 Marchantia polymorpha HOM05D004277 ORTHO05D005148 9.6e-174 615.5 1432 31.9
TPR.G35532 Trifolium pratense HOM05D004277 ORTHO05D005148 3.4e-171 607.1 595 57.0
Sopen12g008110 Solanum pennellii HOM05D004277 ORTHO05D005148 4.2e-169 600.1 522 60.9
Thecc.07G167700 Theobroma cacao HOM05D004277 ORTHO05D005148 1.0e-167 595.5 444 70.0
TAR626G1109 Trochodendron aralioides HOM05D004277 ORTHO05D005148 1.3e-162 578.6 444 68.9
CARHR072830 Cardamine hirsuta HOM05D004277 ORTHO05D005148 2.4e-161 574.3 538 57.4
Carub.0002s2605 Capsella rubella HOM05D004277 ORTHO05D005148 9.3e-153 545.8 538 55.8
Haze_07823 Corylus avellana HOM05D004277 ORTHO05D005148 5.8e-147 526.6 340 77.6
Cpa.g.sc34.11 Carica papaya HOM05D004277 ORTHO05D005148 4.2e-145 520.4 393 68.4
SEGI_00999 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 5.1e-143 513.5 668 41.0
AagrBONN_evm.TU.Sc2ySwM_228.3209 Anthoceros agrestis HOM05D004277 ORTHO05D005148 2.4e-132 478.0 1018 33.7
Thecc.07G167800 Theobroma cacao HOM05D004277 ORTHO05D005148 8.8e-103 379.8 356 57.9
SEGI_07420 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 2.0e-99 368.6 470 39.4
Nitab4.5_0009962g0020 Nicotiana tabacum HOM05D004277 ORTHO05D005148 4.1e-92 344.4 275 66.2
SEGI_33780 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 1.2e-86 326.2 477 41.5
Cc00_g15170 Coffea canephora HOM05D004277 ORTHO05D005148 5.8e-86 323.9 580 39.0
Cc03_g14950 Coffea canephora HOM05D004277 ORTHO05D005148 6.0e-83 313.9 881 31.7
MELO3C008303.2 Cucumis melo HOM05D004277 ORTHO05D005148 1.9e-76 292.4 392 44.6
SEGI_06167 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 1.5e-70 272.7 440 36.8
MD10G1205800 Malus domestica HOM05D004277 ORTHO05D005148 9.2e-68 263.5 225 65.8
MD05G1224300 Malus domestica HOM05D004277 ORTHO05D005148 1.9e-65 255.8 149 87.2
Cpa.g.sc34.5 Carica papaya HOM05D004277 ORTHO05D005148 9.5e-65 253.4 229 59.0
TPR.G34228 Trifolium pratense HOM05D004277 ORTHO05D005148 3.4e-62 245.0 400 40.8
SEGI_16544 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 9.9e-62 243.4 354 41.5
MELO3C025974.2 Cucumis melo HOM05D004277 ORTHO05D005148 4.9e-61 241.1 159 74.2
Actinidia09631 Actinidia chinensis HOM05D004277 ORTHO05D005148 4.3e-57 228.0 138 79.7
Zm00001eb146320 Zea mays HOM05D004277 ORTHO05D005148 7.1e-52 210.7 246 42.3
Os10g0575800 Oryza sativa ssp. japonica HOM05D004277 ORTHO05D005148 8.7e-50 203.8 227 48.5
Cpa.g.sc34.4 Carica papaya HOM05D004277 ORTHO05D005148 2.5e-49 202.2 173 60.1
TAR624G0115 Trochodendron aralioides HOM05D004277 ORTHO05D005148 4.3e-49 201.4 191 60.2
MSTRG.12674 Avicennia marina HOM05D004277 ORTHO05D005148 9.6e-49 200.3 147 70.1
TPR.G40005 Trifolium pratense HOM05D004277 ORTHO05D005148 2.2e-45 189.1 150 66.0
Zm00001eb372650 Zea mays HOM05D004277 ORTHO05D005148 2.7e-43 182.2 258 37.6
MCO13G561 Micromonas commoda HOM05D004277 ORTHO05D005148 6.0e-43 181.0 1190 22.9
BcaB02g08672 Brassica carinata HOM05D004277 ORTHO05D005148 1.1e-41 176.8 173 59.0
CBR_g39747 Chara braunii HOM05D004277 ORTHO05D005148 6.0e-35 154.5 709 23.8
MD10G1205500 Malus domestica HOM05D004277 ORTHO05D005148 1.1e-33 150.2 195 47.7
SHI21617 Sapria himalayana HOM05D004277 ORTHO05D005148 1.9e-33 149.4 147 54.4
PSO478G2881 Papaver somniferum HOM05D004277 ORTHO05D005148 4.8e-32 144.8 198 48.0
PRCOL_00003205 Prasinoderma coloniale HOM05D004277 ORTHO05D005148 4.0e-31 141.7 1194 23.3
FAN06G0062 Fragaria x ananassa HOM05D016453 ORTHO05D017011 5.8e-30 137.9 157 54.8
FAN12G1216 Fragaria x ananassa HOM05D016453 ORTHO05D017011 1.3e-29 136.7 157 54.8
Zm00001eb060300 Zea mays HOM05D004277 ORTHO05D005148 2.2e-29 136.0 140 52.9
CBR_g39748 Chara braunii HOM05D004277 ORTHO05D005148 6.7e-26 124.4 464 25.2
MD10G1205700 Malus domestica HOM05D004277 ORTHO05D005148 4.3e-25 121.7 106 63.2
CDE05G3501 Ceratophyllum demersum HOM05D003316 ORTHO05D003690 1.4e-23 116.7 118 52.5
Actinidia07382 Actinidia chinensis HOM05D004277 ORTHO05D005148 1.8e-23 116.3 279 34.1
MELO3C029569.2 Cucumis melo HOM05D004277 ORTHO05D005148 2.4e-23 115.9 78 67.9
Cre01.g039600 Chlamydomonas reinhardtii HOM05D004277 ORTHO05D005148 2.0e-22 112.8 587 24.2
SHI21613 Sapria himalayana HOM05D004277 ORTHO05D002750 2.6e-22 112.5 152 43.4
SHI21614 Sapria himalayana HOM05D004277 ORTHO05D005148 5.9e-22 111.3 165 47.3
Cpa.g.sc34.6 Carica papaya HOM05D004277 ORTHO05D005148 1.3e-21 110.2 91 61.5
MD10G1205600 Malus domestica HOM05D004277 ORTHO05D005148 8.5e-21 107.5 61 82.0
FAN06G4064 Fragaria x ananassa HOM05D016453 ORTHO05D017011 1.4e-20 106.7 157 46.5
TPR.G23191 Trifolium pratense HOM05D003498 ORTHO05D005148 1.6e-19 103.2 91 61.5
FvH4_7g12450 Fragaria vesca HOM05D016453 ORTHO05D017011 4.6e-19 101.7 120 53.3
MELO3C027882.2 Cucumis melo HOM05D004277 ORTHO05D005148 6.1e-19 101.3 148 45.9
Zm00001eb307990 Zea mays HOM05D004277 ORTHO05D005148 5.1e-18 98.2 100 44.0
Thecc.08G194100 Theobroma cacao HOM05D004277 ORTHO05D005148 6.7e-18 97.8 68 76.5
TPR.G28108 Trifolium pratense HOM05D004277 ORTHO05D005148 4.3e-17 95.1 98 52.0
Zm00001eb269250 Zea mays HOM05D004277 ORTHO05D005148 9.7e-17 94.0 94 45.7
SEGI_27653 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 6.9e-15 87.8 120 42.5
TPR.G17466 Trifolium pratense HOM05D004277 ORTHO05D005148 2.9e-13 82.4 61 68.9
Zm00001eb307980 Zea mays HOM05D004277 ORTHO05D005148 4.2e-12 78.6 99 43.4
Zm00001eb086610 Zea mays HOM05D004277 ORTHO05D005148 7.2e-12 77.8 99 43.4
Hma1.2p1_0148F.1_g065920 Hydrangea macrophylla HOM05D001726 ORTHO05D001761 3.6e-11 75.5 73 53.4
Actinidia07375 Actinidia chinensis HOM05D004277 ORTHO05D005148 2.3e-10 72.8 139 32.4
TPR.G236 Trifolium pratense HOM05D004277 ORTHO05D005148 3.7e-08 65.5 51 60.8
Actinidia07374 Actinidia chinensis HOM05D004277 ORTHO05D005148 6.3e-08 64.7 144 34.7
QL04p080502 Quercus lobata HOM05D004277 ORTHO05D005148 8.2e-08 64.3 60 55.0
Zm00001eb329120 Zea mays HOM05D002219 ORTHO05D012612 3.1e-07 62.4 136 29.4
QL12p004446 Quercus lobata HOM05D004277 ORTHO05D050645 4.1e-07 62.0 68 52.9
Actinidia07381 Actinidia chinensis HOM05D004277 ORTHO05D005148 7.0e-07 61.2 142 33.1
SHI21618 Sapria himalayana HOM05D004277 ORTHO05D005148 5.9e-06 58.2 68 52.9


User provided reference genes

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