Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN11G0596 Fragaria x ananassa HOM05D004406 ORTHO05D005660 8.8e-287 989.6 492 100.0
FvH4_3g16570 Fragaria vesca HOM05D004406 ORTHO05D005660 2.6e-278 961.4 492 97.6
FAN25G0744 Fragaria x ananassa HOM05D004406 ORTHO05D005660 2.9e-274 948.0 477 98.3
FAN21G0297 Fragaria x ananassa HOM05D004406 ORTHO05D005660 4.0e-271 937.6 474 97.3
RcHm_v2.0_Chr5g0027601 Rosa chinensis HOM05D004406 ORTHO05D005660 5.2e-263 910.6 492 92.1
Prupe.4G148400 Prunus persica HOM05D004406 ORTHO05D005660 1.0e-250 869.8 492 87.6
FAN16G0888 Fragaria x ananassa HOM05D004406 ORTHO05D005660 4.6e-243 844.3 470 91.1
MD05G1209100 Malus domestica HOM05D004406 ORTHO05D005660 7.8e-243 843.6 469 87.8
MD10G1195500 Malus domestica HOM05D004406 ORTHO05D005660 4.3e-233 811.2 449 88.0
COL.COLO4_35795 Corchorus olitorius HOM05D004406 ORTHO05D005660 3.2e-228 795.0 469 81.0
TWI38G2065 Tripterygium wilfordii HOM05D004406 ORTHO05D005660 1.5e-225 786.2 466 81.3
Manes.10G061001 Manihot esculenta HOM05D004406 ORTHO05D005660 9.6e-225 783.5 469 80.4
Cfa019935 Carpinus fangiana HOM05D004406 ORTHO05D005660 1.6e-224 782.7 476 78.4
CANSAT25G0941 Cannabis sativa HOM05D004406 ORTHO05D005660 3.6e-224 781.6 472 80.1
CSS0020755 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 8.1e-224 780.4 465 80.2
Thecc.01G135800 Theobroma cacao HOM05D004406 ORTHO05D005660 8.1e-224 780.4 465 80.9
Potri.001G394300 Populus trichocarpa HOM05D004406 ORTHO05D005660 1.2e-222 776.5 465 81.1
TAR376G0792 Trochodendron aralioides HOM05D004406 ORTHO05D005660 5.8e-222 774.2 465 79.8
Eucgr.F01412 Eucalyptus grandis HOM05D004406 ORTHO05D005660 7.6e-222 773.9 466 79.2
Dinv26661 Davidia involucrata HOM05D004406 ORTHO05D005660 2.2e-221 772.3 468 79.3
CiPaw.01G106500 Carya illinoinensis HOM05D004406 ORTHO05D005660 2.9e-221 771.9 469 79.1
Lj1C808G13 Lonicera japonica HOM05D004406 ORTHO05D005660 2.9e-221 771.9 470 78.7
VMungo1080G1685 Vigna mungo HOM05D004406 ORTHO05D005660 4.2e-220 768.1 478 77.0
Medtr2g069330 Medicago truncatula HOM05D004406 ORTHO05D005660 9.3e-220 766.9 486 74.7
Lj3g0010925 Lotus japonicus HOM05D004406 ORTHO05D005660 1.2e-219 766.5 468 77.8
Atru.chr9.1518 Acer truncatum HOM05D004406 ORTHO05D005660 3.5e-219 765.0 469 78.7
Ciclev10001005m.g Citrus clementina HOM05D004406 ORTHO05D005660 3.5e-219 765.0 470 78.1
Gorai.007G217900 Gossypium raimondii HOM05D004406 ORTHO05D005660 7.9e-219 763.8 465 78.5
Lalb_Chr25g0284911 Lupinus albus HOM05D004406 ORTHO05D005660 7.9e-219 763.8 473 78.0
Gohir.D11G203200 Gossypium hirsutum HOM05D004406 ORTHO05D005660 1.0e-218 763.5 465 78.5
Phvul.005G057900 Phaseolus vulgaris HOM05D004406 ORTHO05D005660 3.9e-218 761.5 478 76.8
Glyma.15G256700 Glycine max HOM05D004406 ORTHO05D005660 5.1e-218 761.1 469 77.4
Sc03g0007790 Simmondsia chinensis HOM05D004406 ORTHO05D005660 8.7e-218 760.4 467 78.6
GSVIVG01009332001 Vitis vinifera HOM05D004406 ORTHO05D005660 8.7e-218 760.4 467 78.4
arahy.Tifrunner.gnm1.ann1.L0EV17 Arachis hypogaea HOM05D004406 ORTHO05D005660 1.9e-217 759.2 471 76.9
Ca_03669_v3 Cicer arietinum L. HOM05D004406 ORTHO05D005660 2.5e-217 758.8 463 77.8
MSTRG.6706 Avicennia marina HOM05D004406 ORTHO05D005660 9.6e-217 756.9 467 76.4
Hund02309 Selenicereus undatus HOM05D004406 ORTHO05D005660 2.1e-216 755.7 473 77.2
Actinidia18837 Actinidia chinensis HOM05D004406 ORTHO05D005660 4.8e-216 754.6 465 79.6
Nn5g30617 Nelumbo nucifera HOM05D004406 ORTHO05D005660 1.4e-215 753.1 468 78.2
Gohir.A11G220400 Gossypium hirsutum HOM05D004406 ORTHO05D005660 2.4e-215 752.3 465 77.4
HanXRQChr11g0329941 Helianthus annuus HOM05D004406 ORTHO05D005660 5.8e-214 747.7 486 75.9
Psat1g012120 Pisum sativum HOM05D004406 ORTHO05D005660 7.6e-214 747.3 468 76.1
Cc05_g10180 Coffea canephora HOM05D004406 ORTHO05D005660 1.4e-212 743.0 469 74.4
Cpa.g.sc132.61 Carica papaya HOM05D004406 ORTHO05D005660 3.2e-212 741.9 484 75.4
Peaxi162Scf00003g04835 Petunia axillaris HOM05D004406 ORTHO05D005660 4.2e-212 741.5 469 75.3
TAR628G1650 Trochodendron aralioides HOM05D004406 ORTHO05D005660 1.2e-211 740.0 457 77.9
EL10Ac9g22869 Beta vulgaris HOM05D004406 ORTHO05D005660 8.7e-210 733.8 474 74.9
ECA236G4460 Erigeron canadensis HOM05D004406 ORTHO05D005660 1.1e-209 733.4 469 75.5
vmacro12019 Vaccinium macrocarpon HOM05D004406 ORTHO05D005660 1.1e-209 733.4 446 78.9
Migut.M00660 Erythranthe guttata HOM05D004406 ORTHO05D005660 1.5e-209 733.0 465 76.3
Oeu002771.1 Olea europaea HOM05D004406 ORTHO05D005660 1.5e-209 733.0 452 77.4
PSO170G0587 Papaver somniferum HOM05D004406 ORTHO05D005660 5.6e-209 731.1 472 73.9
PGSC0003DMG400008359 Solanum tuberosum HOM05D004406 ORTHO05D005660 5.6e-209 731.1 465 75.3
vmacro15158 Vaccinium macrocarpon HOM05D004406 ORTHO05D005660 5.6e-209 731.1 461 77.0
Aqoxy6G02573 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 7.4e-209 730.7 471 74.1
Solyc10g078480.2 Solanum lycopersicum HOM05D004406 ORTHO05D005660 1.6e-208 729.6 465 75.1
Sopen10g029140 Solanum pennellii HOM05D004406 ORTHO05D005660 2.1e-208 729.2 465 75.1
PSO528G0243 Papaver somniferum HOM05D004406 ORTHO05D005660 1.8e-207 726.1 472 73.5
Aqoxy6G03019 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 3.4e-206 721.8 469 74.0
CAN.G960.55 Capsicum annuum HOM05D004406 ORTHO05D005660 2.2e-205 719.2 467 74.5
QL04p076605 Quercus lobata HOM05D004406 ORTHO05D005660 2.2e-205 719.2 428 79.7
Oeu044427.1 Olea europaea HOM05D004406 ORTHO05D005660 2.9e-205 718.8 555 65.0
Sed0020103 Sechium edule HOM05D004406 ORTHO05D005660 2.9e-205 718.8 469 73.8
Dinv13306 Davidia involucrata HOM05D004406 ORTHO05D005660 4.2e-204 714.9 441 78.2
arahy.Tifrunner.gnm1.ann1.BTSV3Q Arachis hypogaea HOM05D004406 ORTHO05D005660 7.1e-204 714.1 471 74.1
Nitab4.5_0006279g0030 Nicotiana tabacum HOM05D004406 ORTHO05D005660 7.1e-204 714.1 477 73.2
unitig_62.g23080 Utricularia gibba HOM05D004406 ORTHO05D005660 3.0e-202 708.8 467 72.4
Haze_15516 Corylus avellana HOM05D004406 ORTHO05D005660 2.5e-201 705.7 470 73.2
PGR004G1399 Punica granatum HOM05D004406 ORTHO05D005660 2.4e-199 699.1 467 73.4
ClCG03G009170 Citrullus lanatus HOM05D004406 ORTHO05D005660 4.5e-198 694.9 476 71.6
CsaV3_5G023450 Cucumis sativus L. HOM05D004406 ORTHO05D005660 1.7e-197 693.0 470 72.6
FAN21G3885 Fragaria x ananassa HOM05D004406 ORTHO05D005660 1.7e-197 693.0 350 96.6
Nitab4.5_0000812g0150 Nicotiana tabacum HOM05D004406 ORTHO05D005660 8.5e-197 690.6 473 71.2
ATR0739G109 Amborella trichopoda HOM05D004406 ORTHO05D005660 9.4e-196 687.2 472 69.9
MELO3C022781.2 Cucumis melo HOM05D004406 ORTHO05D005660 1.6e-195 686.4 471 71.8
SGA_v2.0_scaffold73G24357 Striga asiatica HOM05D004406 ORTHO05D005660 4.6e-195 684.9 476 71.4
Aa31LG7G1110 Aethionema arabicum HOM05D004406 ORTHO05D005660 2.3e-194 682.6 469 72.1
AUR62017618 Chenopodium quinoa HOM05D004406 ORTHO05D005660 3.3e-193 678.7 425 76.0
Duzib187G2008 Durio zibethinus HOM05D004406 ORTHO05D005660 4.8e-192 674.9 465 72.7
C05p14870 Brassica napus HOM05D004406 ORTHO05D005660 9.1e-191 670.6 473 70.6
BolC5t30202H Brassica oleracea HOM05D004406 ORTHO05D005660 2.6e-190 669.1 473 70.4
DCAR_013800 Daucus carota HOM05D004406 ORTHO05D005660 1.7e-189 666.4 480 70.2
A06p12560 Brassica napus HOM05D004406 ORTHO05D005660 3.8e-189 665.2 478 70.1
CARHR017050 Cardamine hirsuta HOM05D004406 ORTHO05D005660 5.0e-189 664.8 465 71.0
AL1G28740 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 3.2e-188 662.1 465 71.0
BraA06t24419Z Brassica rapa HOM05D004406 ORTHO05D005660 9.4e-188 660.6 473 70.2
AT1G16570 Arabidopsis thaliana HOM05D004406 ORTHO05D005660 1.2e-187 660.2 465 71.0
BolC8t51983H Brassica oleracea HOM05D004406 ORTHO05D005660 2.7e-187 659.1 472 70.8
Thhalv10007520m.g Eutrema salsugineum HOM05D004406 ORTHO05D005660 6.1e-187 657.9 465 71.0
Sp1g14730 Schrenkiella parvula HOM05D004406 ORTHO05D005660 6.1e-187 657.9 465 71.0
THA.LOC104808122 Tarenaya hassleriana HOM05D004406 ORTHO05D005660 3.9e-186 655.2 464 69.8
A09p60830 Brassica napus HOM05D004406 ORTHO05D005660 1.1e-185 653.7 479 68.7
C08p44420 Brassica napus HOM05D004406 ORTHO05D005660 1.1e-185 653.7 482 69.1
BraA09t41456Z Brassica rapa HOM05D004406 ORTHO05D005660 1.1e-185 653.7 479 68.7
Carub.0001s1633 Capsella rubella HOM05D004406 ORTHO05D005660 2.6e-185 652.5 465 69.9
SEGI_06613 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 3.7e-184 648.7 510 62.5
Aqoxy113s002 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 4.8e-184 648.3 407 75.7
CDE06G1959 Ceratophyllum demersum HOM05D004406 ORTHO05D005660 4.1e-183 645.2 494 65.6
SalBow5G0012 Salvia bowleyana HOM05D004406 ORTHO05D005660 7.7e-182 641.0 519 63.6
Gohir.A09G004700 Gossypium hirsutum HOM05D004406 ORTHO05D005660 3.8e-181 638.6 465 69.5
Zm00001eb401770 Zea mays HOM05D004406 ORTHO05D005660 1.9e-180 636.3 465 67.3
Os03g0180700 Oryza sativa ssp. japonica HOM05D004406 ORTHO05D005660 1.6e-179 633.3 471 66.5
Glyma.08G170200 Glycine max HOM05D004406 ORTHO05D005660 1.4e-178 630.2 409 73.3
HPP92_025666 Vanilla planifolia HOM05D004406 ORTHO05D005660 2.6e-177 625.9 468 66.0
BcaC05g25520 Brassica carinata HOM05D004406 ORTHO05D005660 7.7e-174 614.4 440 69.5
TPR.G9754 Trifolium pratense HOM05D004406 ORTHO05D005660 7.2e-172 607.8 361 79.5
Lsat_1_v5_gn_7_99701 Lactuca sativa HOM05D004406 ORTHO05D005660 9.4e-172 607.4 470 66.4
Rhsim06G0184400 Rhododendron simsii HOM05D004406 ORTHO05D005660 8.8e-170 600.9 475 66.7
SalBow5G1666 Salvia bowleyana HOM05D004406 ORTHO05D005660 1.4e-167 593.6 406 70.9
CDE04G2964 Ceratophyllum demersum HOM05D004406 ORTHO05D005660 1.2e-161 573.9 476 61.8
Mapoly0116s0013 Marchantia polymorpha HOM05D004406 ORTHO05D005660 3.5e-158 562.4 510 57.1
Gohir.A11G222401 Gossypium hirsutum HOM05D004406 ORTHO05D005660 2.0e-153 546.6 359 74.7
Pp3c22_7820 Physcomitrium patens HOM05D004406 ORTHO05D005660 2.6e-153 546.2 489 58.5
AL6G51100 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 3.7e-152 542.3 465 61.1
Actinidia35181 Actinidia chinensis HOM05D004406 ORTHO05D005660 1.9e-148 530.0 464 60.3
SMO353G0172 Selaginella moellendorffii HOM05D004406 ORTHO05D005660 9.5e-148 527.7 467 59.5
AagrBONN_evm.TU.Sc2ySwM_362.1435 Anthoceros agrestis HOM05D004406 ORTHO05D005660 1.1e-135 487.6 469 53.9
CBR_g37525 Chara braunii HOM05D004406 ORTHO05D005660 2.9e-128 463.0 539 47.3
Gorai.006G005600 Gossypium raimondii HOM05D004406 ORTHO05D005660 1.9e-124 450.3 464 52.6
Sabra16G0258600 Salix brachista HOM05D004406 ORTHO05D005660 2.6e-121 439.9 268 76.9
PSO017G0585 Papaver somniferum HOM05D004406 ORTHO05D005660 6.4e-112 408.7 305 64.3
Gorai.007G217600 Gossypium raimondii HOM05D004406 ORTHO05D005660 3.5e-110 402.9 325 66.2
Rhsim08G0107400 Rhododendron simsii HOM05D004406 ORTHO05D005660 1.1e-108 397.9 242 80.6
MCO08G055 Micromonas commoda HOM05D004406 ORTHO05D005660 2.1e-94 350.5 477 44.7
Gohir.D11G203050 Gossypium hirsutum HOM05D004406 ORTHO05D005660 1.9e-87 327.4 285 63.9
Cre12.g516550 Chlamydomonas reinhardtii HOM05D004406 ORTHO05D005660 1.1e-84 318.2 381 44.9
SHI18054 Sapria himalayana HOM05D004406 ORTHO05D005660 1.3e-83 314.7 272 61.0
SEGI_11739 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 3.4e-81 306.6 197 73.6
Haze_26719 Corylus avellana HOM05D004406 ORTHO05D005660 1.4e-79 301.2 512 36.7
SEGI_33737 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 1.7e-72 277.7 272 51.1
PRCOL_00002569 Prasinoderma coloniale HOM05D004406 ORTHO05D005660 1.2e-70 271.6 511 37.0
CSS0001722 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 1.6e-70 271.2 248 58.9
SGA_v2.0_scaffold181G39778 Striga asiatica HOM05D004406 ORTHO05D005660 5.1e-69 266.2 456 40.1
Cfa025278 Carpinus fangiana HOM05D004406 ORTHO05D005660 2.2e-67 260.8 461 39.0
FAN04G0447 Fragaria x ananassa HOM05D004406 ORTHO05D005660 7.0e-66 255.8 174 76.4
AL6G51070 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 2.3e-53 214.2 181 59.1
Actinidia18838 Actinidia chinensis HOM05D004406 ORTHO05D005660 1.5e-52 211.5 288 44.1
Zm00001eb421280 Zea mays HOM05D004406 ORTHO05D005660 3.4e-52 210.3 209 51.7
CSS0016238 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 3.7e-51 206.8 111 84.7
CSS0034904 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 1.4e-50 204.9 111 82.9
Zm00001eb023770 Zea mays HOM05D003078 ORTHO05D003545 1.4e-50 204.9 198 52.5
CSS0034423 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 4.1e-50 203.4 111 82.9
SHI18055 Sapria himalayana HOM05D004406 ORTHO05D005660 8.3e-43 179.1 207 52.2
CSS0028761 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 1.0e-40 172.2 111 73.0
Zm00001eb180660 Zea mays HOM05D004406 ORTHO05D000467 2.5e-39 167.5 129 62.0
TPR.G22508 Trifolium pratense HOM05D004406 ORTHO05D005660 6.1e-38 162.9 106 72.6
Os06g0564800 Oryza sativa ssp. japonica HOM05D004406 ORTHO05D005660 6.8e-37 159.5 103 73.8
Actinidia18840 Actinidia chinensis HOM05D004406 ORTHO05D005660 2.0e-36 157.9 341 32.8
Zm00001eb005970 Zea mays HOM05D004406 ORTHO05D005660 1.0e-32 145.6 122 59.0
Zm00001eb049380 Zea mays HOM05D004406 ORTHO05D005660 1.1e-31 142.1 104 66.3
Zm00001eb307610 Zea mays HOM05D004406 ORTHO05D005660 7.3e-31 139.4 92 66.3
Actinidia18841 Actinidia chinensis HOM05D004406 ORTHO05D005660 4.4e-28 130.2 66 93.9
Haze_08535 Corylus avellana HOM05D004406 ORTHO05D005660 9.5e-23 112.5 125 54.4
Lj3g0015683 Lotus japonicus HOM05D004406 ORTHO05D036510 9.5e-23 112.5 67 77.6
Hma1.2p1_0035F.1_g022190 Hydrangea macrophylla HOM05D004406 ORTHO05D005660 1.3e-16 92.0 58 72.4
C02p50710 Brassica napus HOM05D004406 ORTHO05D005660 2.8e-14 84.3 63 68.3
SEGI_01378 Sequoiadendron giganteum HOM05D000678 ORTHO05D001709 9.2e-10 69.3 42 81.0
DCAR_010031 Daucus carota HOM05D000781 ORTHO05D012367 2.3e-08 64.7 45 68.9
vmacro12020 Vaccinium macrocarpon HOM05D004406 ORTHO05D036510 5.6e-07 60.1 42 71.4
vmacro15157 Vaccinium macrocarpon HOM05D004406 ORTHO05D036510 1.2e-06 58.9 42 69.0
Gohir.D11G203250 Gossypium hirsutum HOM05D004406 ORTHO05D012367 2.8e-06 57.8 46 52.2


User provided reference genes

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