Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN11G0545 Fragaria x ananassa HOM05D003712 ORTHO05D004368 6.8e-105 384.0 199 100.0
FAN16G2577 Fragaria x ananassa HOM05D003712 ORTHO05D004368 4.9e-103 377.9 199 98.5
FvH4_3g03882 Fragaria vesca HOM05D003712 ORTHO05D004368 1.2e-43 180.6 90 100.0
RcHm_v2.0_Chr5g0006161 Rosa chinensis HOM05D003712 ORTHO05D004368 1.8e-41 173.3 110 80.9
FAN25G1764 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.2e-35 154.1 134 67.2
FAN21G1388 Fragaria x ananassa HOM05D003712 ORTHO05D004368 3.7e-34 149.1 108 75.0
FvH4_3g03881 Fragaria vesca HOM05D003712 ORTHO05D004368 4.8e-34 148.7 90 85.6
Nitab4.5_0008774g0010 Nicotiana tabacum HOM05D003712 ORTHO05D004368 1.6e-32 143.7 207 40.1
FAN16G1684 Fragaria x ananassa HOM05D003712 ORTHO05D004368 7.7e-32 141.4 90 83.3
RcHm_v2.0_Chr5g0006151 Rosa chinensis HOM05D003712 ORTHO05D004368 5.5e-30 135.2 91 80.2
FAN25G2638 Fragaria x ananassa HOM05D003712 ORTHO05D004368 4.4e-27 125.6 58 96.6
FAN05G3297 Fragaria x ananassa HOM05D004871 ORTHO05D005755 7.5e-27 124.8 193 37.3
FAN02G1220 Fragaria x ananassa HOM05D003712 ORTHO05D004368 6.3e-26 121.7 190 36.3
Haze_06583 Corylus avellana HOM05D003712 ORTHO05D004368 3.8e-23 112.5 103 54.4
Potri.007G109600 Populus trichocarpa HOM05D003712 ORTHO05D004368 3.8e-23 112.5 90 61.1
ECA234G4130 Erigeron canadensis HOM05D003712 ORTHO05D004368 3.3e-22 109.4 190 32.6
Prupe.4G037900 Prunus persica HOM05D003712 ORTHO05D004368 6.1e-21 105.1 98 56.1
Thecc.06G200700 Theobroma cacao HOM05D003712 ORTHO05D004368 1.2e-19 100.9 106 51.9
MBI18_g37562_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 4.4e-19 99.0 154 35.1
Oeu006542.1 Olea europaea HOM05D003712 ORTHO05D004368 4.4e-19 99.0 106 49.1
Potri.005G061780 Populus trichocarpa HOM05D003712 ORTHO05D004368 4.4e-19 99.0 91 53.8
TAR626G1156 Trochodendron aralioides HOM05D003712 ORTHO05D004368 5.7e-19 98.6 108 46.3
Potri.007G106900 Populus trichocarpa HOM05D003712 ORTHO05D004368 9.8e-19 97.8 90 53.3
TAR626G0105 Trochodendron aralioides HOM05D003712 ORTHO05D004368 9.8e-19 97.8 108 46.3
MBI06_g08453_MAGBIO Magnolia biondii HOM05D003712 ORTHO05D004368 2.2e-18 96.7 98 51.0
Manes.13G034200 Manihot esculenta HOM05D003712 ORTHO05D004368 2.2e-18 96.7 93 53.8
CiPaw.10G118000 Carya illinoinensis HOM05D003712 ORTHO05D004368 2.9e-18 96.3 106 49.1
Potri.007G117900 Populus trichocarpa HOM05D003712 ORTHO05D004368 3.7e-18 95.9 90 53.3
Actinidia24056 Actinidia chinensis HOM05D003712 ORTHO05D004368 1.1e-17 94.4 104 48.1
Gohir.A06G127300 Gossypium hirsutum HOM05D003712 ORTHO05D004368 1.4e-17 94.0 105 47.6
Hma1.2p1_0565F.1_g179580 Hydrangea macrophylla HOM05D003712 ORTHO05D004368 2.4e-17 93.2 106 45.3
Gohir.D06G128000 Gossypium hirsutum HOM05D003712 ORTHO05D004368 4.1e-17 92.4 105 47.6
Gohir.D10G127900 Gossypium hirsutum HOM05D003712 ORTHO05D004368 4.1e-17 92.4 92 48.9
Gorai.010G149700 Gossypium raimondii HOM05D003712 ORTHO05D004368 4.1e-17 92.4 105 47.6
Oeu006541.1 Olea europaea HOM05D003712 ORTHO05D004368 4.1e-17 92.4 106 48.1
Gohir.D10G127800 Gossypium hirsutum HOM05D003712 ORTHO05D004368 5.4e-17 92.0 113 43.4
Gorai.011G140900 Gossypium raimondii HOM05D003712 ORTHO05D004368 5.4e-17 92.0 113 43.4
Hma1.2p1_0565F.1_g179590 Hydrangea macrophylla HOM05D003712 ORTHO05D004368 7.0e-17 91.7 104 46.2
Gohir.A10G139000 Gossypium hirsutum HOM05D003712 ORTHO05D004368 9.2e-17 91.3 112 42.9
Gorai.011G141000 Gossypium raimondii HOM05D003712 ORTHO05D004368 9.2e-17 91.3 92 47.8
Ciclev10033348m.g Citrus clementina HOM05D003712 ORTHO05D004368 1.2e-16 90.9 87 52.9
DCAR_008077 Daucus carota HOM05D003712 ORTHO05D004368 3.5e-16 89.4 87 49.4
Prupe.3G230700 Prunus persica HOM05D003712 ORTHO05D004368 3.5e-16 89.4 99 46.5
COL.COLO4_31595 Corchorus olitorius HOM05D003712 ORTHO05D004368 7.8e-16 88.2 94 52.1
Gohir.A10G138900 Gossypium hirsutum HOM05D003712 ORTHO05D004368 7.8e-16 88.2 92 46.7
Aqoxy4G02045 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 1.0e-15 87.8 108 41.7
Eucgr.E03691 Eucalyptus grandis HOM05D003712 ORTHO05D004368 1.0e-15 87.8 91 47.3
ATR0693G124 Amborella trichopoda HOM05D003712 ORTHO05D004368 1.3e-15 87.4 105 45.7
CANSAT56G2493 Cannabis sativa HOM05D003712 ORTHO05D004368 1.3e-15 87.4 104 40.4
Manes.12G082800 Manihot esculenta HOM05D003712 ORTHO05D004368 1.3e-15 87.4 91 48.4
Prupe.3G230500 Prunus persica HOM05D003712 ORTHO05D004368 1.7e-15 87.0 91 47.3
DCAR_004145 Daucus carota HOM05D003712 ORTHO05D004368 3.0e-15 86.3 91 42.9
Sed0020030 Sechium edule HOM05D003712 ORTHO05D004368 3.0e-15 86.3 112 42.9
Ciclev10003665m.g Citrus clementina HOM05D003712 ORTHO05D004368 3.9e-15 85.9 96 46.9
COL.COLO4_06989 Corchorus olitorius HOM05D003712 ORTHO05D004368 3.9e-15 85.9 90 44.4
Dinv13825 Davidia involucrata HOM05D003712 ORTHO05D004368 5.0e-15 85.5 82 48.8
Hma1.2p1_0565F.1_g179610 Hydrangea macrophylla HOM05D003712 ORTHO05D004368 6.6e-15 85.1 98 41.8
Nitab4.5_0000649g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 6.6e-15 85.1 100 44.0
Aqoxy4G02044 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 8.6e-15 84.7 96 41.7
Ciclev10017864m.g Citrus clementina HOM05D003712 ORTHO05D004368 8.6e-15 84.7 99 43.4
DCAR_024926 Daucus carota HOM05D003712 ORTHO05D004368 8.6e-15 84.7 90 52.2
MBI19_g03250_MAGBIO Magnolia biondii HOM05D000165 ORTHO05D008234 8.6e-15 84.7 54 63.0
MD17G1084800 Malus domestica HOM05D003712 ORTHO05D004368 8.6e-15 84.7 98 42.9
Aqoxy5G01666 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 1.1e-14 84.3 85 54.1
Migut.H01521 Erythranthe guttata HOM05D003712 ORTHO05D004368 1.1e-14 84.3 108 36.1
CsaV3_6G049680 Cucumis sativus L. HOM05D003712 ORTHO05D004368 1.5e-14 84.0 55 63.6
Nitab4.5_0005389g0030 Nicotiana tabacum HOM05D003712 ORTHO05D004368 1.5e-14 84.0 104 40.4
Sed0026588 Sechium edule HOM05D003712 ORTHO05D004368 1.5e-14 84.0 105 42.9
Migut.M00336 Erythranthe guttata HOM05D003712 ORTHO05D004368 1.9e-14 83.6 94 40.4
Ciclev10003398m.g Citrus clementina HOM05D003712 ORTHO05D004368 4.3e-14 82.4 101 42.6
CsaV3_6G049690 Cucumis sativus L. HOM05D003712 ORTHO05D004368 4.3e-14 82.4 106 42.5
DCAR_004146 Daucus carota HOM05D003712 ORTHO05D004368 4.3e-14 82.4 90 48.9
QL01p014092 Quercus lobata HOM05D003712 ORTHO05D004368 4.3e-14 82.4 76 48.7
DCAR_004148 Daucus carota HOM05D003712 ORTHO05D004368 5.6e-14 82.0 53 60.4
DCAR_008079 Daucus carota HOM05D003712 ORTHO05D004368 9.5e-14 81.3 87 47.1
DCAR_008081 Daucus carota HOM05D003712 ORTHO05D004368 9.5e-14 81.3 87 47.1
Actinidia09903 Actinidia chinensis HOM05D003712 ORTHO05D004368 1.2e-13 80.9 79 49.4
Aqoxy4G02036 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 1.2e-13 80.9 96 40.6
Aqoxy5G01667 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 1.2e-13 80.9 99 42.4
Cpa.g.sc228.6 Carica papaya HOM05D003712 ORTHO05D004368 1.6e-13 80.5 95 40.0
Cfa014527 Carpinus fangiana HOM05D003712 ORTHO05D004368 1.6e-13 80.5 90 42.2
ClCG00G003860 Citrullus lanatus HOM05D003712 ORTHO05D004368 1.6e-13 80.5 54 59.3
ClCG01G022520 Citrullus lanatus HOM05D003712 ORTHO05D004368 1.6e-13 80.5 54 59.3
Peaxi162Scf00779g00018 Petunia axillaris HOM05D003712 ORTHO05D004368 1.6e-13 80.5 101 40.6
PGSC0003DMG401022401 Solanum tuberosum HOM05D003712 ORTHO05D004368 1.6e-13 80.5 90 45.6
Eucgr.I00207 Eucalyptus grandis HOM05D003712 ORTHO05D004368 2.1e-13 80.1 108 39.8
Peaxi162Scf00779g00008 Petunia axillaris HOM05D003712 ORTHO05D004368 3.6e-13 79.3 107 40.2
FvH4_6g44501 Fragaria vesca HOM05D003712 ORTHO05D004368 6.2e-13 78.6 91 42.9
FAN14G5484 Fragaria x ananassa HOM05D003712 ORTHO05D004368 6.2e-13 78.6 91 42.9
Potri.005G224300 Populus trichocarpa HOM05D003712 ORTHO05D004368 6.2e-13 78.6 98 42.9
FAN14G2952 Fragaria x ananassa HOM05D003712 ORTHO05D004368 8.0e-13 78.2 92 42.4
FAN14G3502 Fragaria x ananassa HOM05D003712 ORTHO05D004368 8.0e-13 78.2 92 42.4
SalBow8G4951 Salvia bowleyana HOM05D003712 ORTHO05D004368 8.0e-13 78.2 105 41.0
ClCG00G003850 Citrullus lanatus HOM05D003712 ORTHO05D004368 1.8e-12 77.0 53 58.5
ClCG01G022510 Citrullus lanatus HOM05D003712 ORTHO05D004368 1.8e-12 77.0 53 58.5
Oeu032463.1 Olea europaea HOM05D003712 ORTHO05D004368 1.8e-12 77.0 107 43.0
Prupe.3G230900 Prunus persica HOM05D003712 ORTHO05D004368 2.3e-12 76.6 87 44.8
Prupe.3G230600 Prunus persica HOM05D003712 ORTHO05D004368 3.1e-12 76.3 104 37.5
Nitab4.5_0014858g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 5.2e-12 75.5 104 36.5
Potri.002G038350 Populus trichocarpa HOM05D003712 ORTHO05D004368 5.2e-12 75.5 83 49.4
Nitab4.5_0002791g0030 Nicotiana tabacum HOM05D003712 ORTHO05D004368 6.8e-12 75.1 104 36.5
RcHm_v2.0_Chr2g0161661 Rosa chinensis HOM05D003712 ORTHO05D004368 6.8e-12 75.1 53 56.6
RcHm_v2.0_Chr2g0161721 Rosa chinensis HOM05D003712 ORTHO05D004368 6.8e-12 75.1 53 56.6
Lsat_1_v5_gn_4_56741 Lactuca sativa HOM05D003712 ORTHO05D004368 2.0e-11 73.6 86 45.3
MD09G1090300 Malus domestica HOM05D003712 ORTHO05D004368 2.0e-11 73.6 89 44.9
Nitab4.5_0005244g0050 Nicotiana tabacum HOM05D003712 ORTHO05D004368 3.4e-11 72.8 75 48.0
Oeu032464.1 Olea europaea HOM05D003712 ORTHO05D004368 3.4e-11 72.8 105 41.0
HanXRQChr15g0488611 Helianthus annuus HOM05D003712 ORTHO05D004368 4.4e-11 72.4 49 53.1
HanXRQChr15g0488621 Helianthus annuus HOM05D003712 ORTHO05D004368 4.4e-11 72.4 49 53.1
FAN02G2973 Fragaria x ananassa HOM05D003712 ORTHO05D004368 5.8e-11 72.0 79 45.6
FAN14G4046 Fragaria x ananassa HOM05D003712 ORTHO05D004368 5.8e-11 72.0 79 45.6
Prupe.3G230400 Prunus persica HOM05D003712 ORTHO05D004368 5.8e-11 72.0 104 36.5
Haze_13069 Corylus avellana HOM05D003712 ORTHO05D004368 7.5e-11 71.6 91 44.0
DCAR_004147 Daucus carota HOM05D003712 ORTHO05D004368 7.5e-11 71.6 109 33.9
FvH4_6g24132 Fragaria vesca HOM05D003712 ORTHO05D004368 7.5e-11 71.6 53 52.8
Peaxi162Scf00485g00072 Petunia axillaris HOM05D003712 ORTHO05D004368 7.5e-11 71.6 75 46.7
Actinidia11811 Actinidia chinensis HOM05D003712 ORTHO05D004368 9.8e-11 71.2 50 60.0
FAN14G3156 Fragaria x ananassa HOM05D003712 ORTHO05D004368 9.8e-11 71.2 91 36.3
DCAR_012976 Daucus carota HOM05D003712 ORTHO05D004368 1.3e-10 70.9 73 41.1
Migut.M00335 Erythranthe guttata HOM05D003712 ORTHO05D004368 1.3e-10 70.9 89 37.1
HanXRQChr05g0131191 Helianthus annuus HOM05D003712 ORTHO05D004368 1.3e-10 70.9 49 53.1
PGSC0003DMG400042227 Solanum tuberosum HOM05D003712 ORTHO05D004368 1.3e-10 70.9 52 55.8
Nitab4.5_0008654g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 1.7e-10 70.5 51 51.0
HanXRQChr16g0517551 Helianthus annuus HOM05D003712 ORTHO05D004368 2.2e-10 70.1 100 34.0
Prupe.1G064500 Prunus persica HOM05D003712 ORTHO05D004368 2.9e-10 69.7 55 50.9
ECA236G2370 Erigeron canadensis HOM05D003712 ORTHO05D004368 3.7e-10 69.3 49 53.1
Lsat_1_v5_gn_4_69400 Lactuca sativa HOM05D003712 ORTHO05D004368 3.7e-10 69.3 101 33.7
FvH4_6g44545 Fragaria vesca HOM05D003712 ORTHO05D004368 6.4e-10 68.6 79 45.6
Nitab4.5_0001871g0120 Nicotiana tabacum HOM05D003712 ORTHO05D004368 1.1e-09 67.8 53 50.9
Migut.M00339 Erythranthe guttata HOM05D003712 ORTHO05D004368 1.9e-09 67.0 76 43.4
Lsat_1_v5_gn_4_56561 Lactuca sativa HOM05D003712 ORTHO05D004368 1.9e-09 67.0 98 31.6
Lsat_1_v5_gn_4_56721 Lactuca sativa HOM05D003712 ORTHO05D004368 1.9e-09 67.0 98 31.6
RcHm_v2.0_Chr7g0234891 Rosa chinensis HOM05D003712 ORTHO05D004368 2.4e-09 66.6 85 36.5
Lsat_1_v5_gn_4_56541 Lactuca sativa HOM05D003712 ORTHO05D004368 3.2e-09 66.2 101 31.7
FvH4_6g44841 Fragaria vesca HOM05D003712 ORTHO05D004368 4.1e-09 65.9 49 51.0
SalBow7G0868 Salvia bowleyana HOM05D003712 ORTHO05D004368 4.1e-09 65.9 87 36.8
FvH4_3g39491 Fragaria vesca HOM05D003712 ORTHO05D004368 5.4e-09 65.5 105 37.1
Lsat_1_v5_gn_4_56621 Lactuca sativa HOM05D003712 ORTHO05D004368 7.0e-09 65.1 98 30.6
Os01g0783000 Oryza sativa ssp. japonica HOM05D003712 ORTHO05D004368 7.0e-09 65.1 52 46.2
RcHm_v2.0_Chr2g0161751 Rosa chinensis HOM05D003712 ORTHO05D004368 7.0e-09 65.1 104 35.6
FAN11G3078 Fragaria x ananassa HOM05D003712 ORTHO05D004368 9.2e-09 64.7 86 45.3
Lsat_1_v5_gn_4_56681 Lactuca sativa HOM05D003712 ORTHO05D004368 9.2e-09 64.7 98 31.6
HanXRQChr16g0517561 Helianthus annuus HOM05D003712 ORTHO05D004368 1.2e-08 64.3 84 41.7
Medtr4g091000 Medicago truncatula HOM05D003712 ORTHO05D004368 1.2e-08 64.3 50 46.0
Glyma.07G190500 Glycine max HOM05D003712 ORTHO05D004368 1.6e-08 63.9 98 31.6
Glyma.08G058700 Glycine max HOM05D003712 ORTHO05D004368 1.6e-08 63.9 93 36.6
TWI18G1344 Tripterygium wilfordii HOM05D003712 ORTHO05D004368 1.6e-08 63.9 89 38.2
Solyc07g054700.3 Solanum lycopersicum HOM05D003712 ORTHO05D004368 2.0e-08 63.5 99 30.3
FAN16G2504 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.7e-08 63.2 51 49.0
TPR.G32437 Trifolium pratense HOM05D003712 ORTHO05D004368 2.7e-08 63.2 97 37.1
FAN09G2580 Fragaria x ananassa HOM05D003712 ORTHO05D004368 3.5e-08 62.8 49 46.9
Nitab4.5_0002956g0060 Nicotiana tabacum HOM05D003712 ORTHO05D004368 3.5e-08 62.8 99 35.4
Phvul.002G222400 Phaseolus vulgaris HOM05D003712 ORTHO05D004368 3.5e-08 62.8 51 43.1
CiPaw.07G040700 Carya illinoinensis HOM05D003712 ORTHO05D004368 4.6e-08 62.4 102 32.4
FAN18G4187 Fragaria x ananassa HOM05D003712 ORTHO05D004368 6.0e-08 62.0 96 29.2
FAN21G1030 Fragaria x ananassa HOM05D003712 ORTHO05D004368 6.0e-08 62.0 105 35.2
FAN25G3769 Fragaria x ananassa HOM05D003712 ORTHO05D004368 6.0e-08 62.0 105 35.2
MBI18_g37563_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 6.0e-08 62.0 57 50.9
TPR.G32428 Trifolium pratense HOM05D003712 ORTHO05D004368 6.0e-08 62.0 89 34.8
Zm00001eb369810 Zea mays HOM05D003712 ORTHO05D004368 6.0e-08 62.0 52 46.2
FvH4_5g34303 Fragaria vesca HOM05D003712 ORTHO05D004368 7.8e-08 61.6 96 29.2
FAN08G3545 Fragaria x ananassa HOM05D003712 ORTHO05D004368 7.8e-08 61.6 96 29.2
Peaxi162Scf00089g01522 Petunia axillaris HOM05D003712 ORTHO05D004368 1.0e-07 61.2 88 39.8
TPR.G22155 Trifolium pratense HOM05D003712 ORTHO05D004368 1.0e-07 61.2 89 33.7
FvH4_3g39481 Fragaria vesca HOM05D003712 ORTHO05D004368 1.3e-07 60.8 104 32.7
Medtr4g091010 Medicago truncatula HOM05D003712 ORTHO05D004368 1.3e-07 60.8 97 28.9
Medtr4g091020 Medicago truncatula HOM05D003712 ORTHO05D004368 1.7e-07 60.5 53 39.6
Aqoxy1G03897 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 2.3e-07 60.1 68 47.1
Lj4g0012776 Lotus japonicus HOM05D003712 ORTHO05D004368 2.3e-07 60.1 43 51.2
Os01g0782901 Oryza sativa ssp. japonica HOM05D003712 ORTHO05D004368 2.3e-07 60.1 111 33.3
RcHm_v2.0_Chr5g0071201 Rosa chinensis HOM05D003712 ORTHO05D004368 2.3e-07 60.1 51 49.0
arahy.Tifrunner.gnm1.ann1.UHMW3K Arachis hypogaea HOM05D003712 ORTHO05D004368 3.0e-07 59.7 86 33.7
DCAR_028776 Daucus carota HOM05D003712 ORTHO05D004368 3.0e-07 59.7 50 52.0
Lj4g0026887 Lotus japonicus HOM05D003712 ORTHO05D004368 3.9e-07 59.3 96 32.3
SalBow7G4100 Salvia bowleyana HOM05D003712 ORTHO05D004368 3.9e-07 59.3 45 48.9
Solyc07g054710.2 Solanum lycopersicum HOM05D003712 ORTHO05D004368 5.0e-07 58.9 107 38.3
Nitab4.5_0004216g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 8.6e-07 58.2 51 49.0
Nitab4.5_0001871g0080 Nicotiana tabacum HOM05D003712 ORTHO05D004368 1.1e-06 57.8 52 42.3
Nitab4.5_0002956g0080 Nicotiana tabacum HOM05D003712 ORTHO05D004368 1.5e-06 57.4 52 42.3
FvH4_6g44490 Fragaria vesca HOM05D003712 ORTHO05D004368 2.5e-06 56.6 43 48.8


User provided reference genes

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