Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN11G0450 Fragaria x ananassa HOM05D019050 ORTHO05D035374 6.3e-272 940.3 505 100.0
FAN16G1216 Fragaria x ananassa HOM05D019050 ORTHO05D035374 5.9e-270 933.7 507 99.4
FvH4_3g42260 Fragaria vesca HOM05D019050 ORTHO05D035374 2.9e-245 851.7 514 91.1
FAN21G1050 Fragaria x ananassa HOM05D019050 ORTHO05D204215 3.3e-236 821.6 514 88.3
FAN26G0730 Fragaria x ananassa HOM05D000476 ORTHO05D005719 1.1e-29 135.6 497 29.2
FAN19G2503 Fragaria x ananassa HOM05D000476 ORTHO05D005719 2.7e-28 131.0 500 28.4
FvH4_1g11140 Fragaria vesca HOM05D000476 ORTHO05D005719 3.5e-28 130.6 500 28.4
Prupe.7G174500 Prunus persica HOM05D000476 ORTHO05D005719 7.7e-28 129.4 486 30.0
FAN28G1417 Fragaria x ananassa HOM05D000476 ORTHO05D005719 2.2e-27 127.9 497 28.4
RcHm_v2.0_Chr2g0098421 Rosa chinensis HOM05D000476 ORTHO05D005719 2.5e-26 124.4 469 28.4
PSO170G5898 Papaver somniferum HOM05D000476 ORTHO05D005719 5.2e-24 116.7 553 27.5
Nn6g31926 Nelumbo nucifera HOM05D000476 ORTHO05D005719 1.2e-23 115.5 549 27.5
Manes.01G150500 Manihot esculenta HOM05D000476 ORTHO05D005719 1.5e-23 115.2 509 29.9
QL06p051967 Quercus lobata HOM05D000476 ORTHO05D005719 2.6e-23 114.4 505 27.5
Dinv40142 Davidia involucrata HOM05D000476 ORTHO05D005719 9.8e-23 112.5 466 29.4
Duzib147G1555 Durio zibethinus HOM05D000476 ORTHO05D005719 6.3e-22 109.8 467 28.7
COL.COLO4_22490 Corchorus olitorius HOM05D000476 ORTHO05D005719 8.3e-22 109.4 500 27.4
Duzib248G0030 Durio zibethinus HOM05D000476 ORTHO05D005719 1.8e-21 108.2 542 28.0
Manes.02G109900 Manihot esculenta HOM05D000476 ORTHO05D005719 2.4e-21 107.8 505 26.5
Nn5g30832 Nelumbo nucifera HOM05D000476 ORTHO05D005719 3.1e-21 107.5 471 26.5
Gohir.D03G005900 Gossypium hirsutum HOM05D000476 ORTHO05D005719 4.1e-21 107.1 467 28.9
PSO210G5945 Papaver somniferum HOM05D000476 ORTHO05D005719 7.0e-21 106.3 505 26.5
CAN.G588.95 Capsicum annuum HOM05D000476 ORTHO05D005719 9.1e-21 105.9 548 25.0
Gohir.A02G173900 Gossypium hirsutum HOM05D000476 ORTHO05D005719 9.1e-21 105.9 467 28.9
Gohir.A01G170100 Gossypium hirsutum HOM05D000476 ORTHO05D005719 1.2e-20 105.5 488 25.8
Dinv41922 Davidia involucrata HOM05D000476 ORTHO05D005719 1.6e-20 105.1 530 26.0
Gohir.D01G161200 Gossypium hirsutum HOM05D000476 ORTHO05D005719 1.6e-20 105.1 489 26.4
Gorai.002G199800 Gossypium raimondii HOM05D000476 ORTHO05D005719 2.0e-20 104.8 489 26.4
Gorai.003G006300 Gossypium raimondii HOM05D000476 ORTHO05D005719 2.0e-20 104.8 467 28.7
MD02G1124000 Malus domestica HOM05D000476 ORTHO05D005719 2.0e-20 104.8 575 28.3
GSVIVG01005188001 Vitis vinifera HOM05D000476 ORTHO05D005719 2.7e-20 104.4 590 27.5
GSVIVG01006889001 Vitis vinifera HOM05D000476 ORTHO05D005719 2.7e-20 104.4 590 27.5
Cfa007026 Carpinus fangiana HOM05D000476 ORTHO05D005719 3.5e-20 104.0 565 25.7
Potri.004G177200 Populus trichocarpa HOM05D000476 ORTHO05D005719 3.5e-20 104.0 502 26.1
Manes.04G071400 Manihot esculenta HOM05D000476 ORTHO05D005719 5.9e-20 103.2 469 26.2
Potri.009G137500 Populus trichocarpa HOM05D000476 ORTHO05D005719 5.9e-20 103.2 550 26.0
Hma1.2p1_0561F.1_g178970 Hydrangea macrophylla HOM05D000476 ORTHO05D005719 1.3e-19 102.1 421 29.0
GSVIVG01023992001 Vitis vinifera HOM05D000476 ORTHO05D005719 2.3e-19 101.3 610 24.8
Oeu029648.1 Olea europaea HOM05D000476 ORTHO05D005719 2.9e-19 100.9 456 28.1
Ciclev10030360m.g Citrus clementina HOM05D000476 ORTHO05D005719 3.8e-19 100.5 558 26.7
Aqoxy5G01114 Aquilegia oxysepala HOM05D000476 ORTHO05D005719 6.5e-19 99.8 496 26.8
CDE02G2797 Ceratophyllum demersum HOM05D000476 ORTHO05D005719 6.5e-19 99.8 455 26.6
Thecc.02G056200 Theobroma cacao HOM05D000476 ORTHO05D005719 8.6e-19 99.4 541 26.8
TWI75G0421 Tripterygium wilfordii HOM05D000476 ORTHO05D005719 8.6e-19 99.4 516 25.6
Cpa.g.sc20.106 Carica papaya HOM05D000476 ORTHO05D005719 1.1e-18 99.0 476 27.1
Lj2A484T43 Lonicera japonica HOM05D000476 ORTHO05D005719 1.1e-18 99.0 436 28.0
CSS0012841 Camellia sinensis var. sinensis HOM05D000476 ORTHO05D005719 1.9e-18 98.2 546 26.2
Peaxi162Scf00362g00535 Petunia axillaris HOM05D000476 ORTHO05D005719 1.9e-18 98.2 473 26.4
Sabra09G0106700 Salix brachista HOM05D000476 ORTHO05D005719 1.9e-18 98.2 549 25.3
Dinv14122 Davidia involucrata HOM05D000476 ORTHO05D005719 3.2e-18 97.4 466 26.4
CiPaw.05G084600 Carya illinoinensis HOM05D000476 ORTHO05D005719 5.5e-18 96.7 497 25.4
RcHm_v2.0_Chr6g0278761 Rosa chinensis HOM05D000476 ORTHO05D005719 5.5e-18 96.7 466 27.0
TWI31G0618 Tripterygium wilfordii HOM05D000476 ORTHO05D005719 9.5e-18 95.9 529 26.8
TAR381G1494 Trochodendron aralioides HOM05D000476 ORTHO05D005719 9.5e-18 95.9 507 26.6
Nitab4.5_0003698g0070 Nicotiana tabacum HOM05D000476 ORTHO05D005719 2.1e-17 94.7 470 26.2
arahy.Tifrunner.gnm1.ann1.FXE6P8 Arachis hypogaea HOM05D000476 ORTHO05D005719 2.8e-17 94.4 360 28.9
Nitab4.5_0004864g0010 Nicotiana tabacum HOM05D000476 ORTHO05D005719 2.8e-17 94.4 468 25.9
Atru.chr5.3386 Acer truncatum HOM05D000476 ORTHO05D005719 3.6e-17 94.0 496 26.8
Rhsim11G0193200 Rhododendron simsii HOM05D000476 ORTHO05D005719 3.6e-17 94.0 542 25.8
PGSC0003DMG400018042 Solanum tuberosum HOM05D000476 ORTHO05D005719 3.6e-17 94.0 549 24.4
AUR62013007 Chenopodium quinoa HOM05D000476 ORTHO05D005719 6.1e-17 93.2 511 25.0
FAN27G1175 Fragaria x ananassa HOM05D000476 ORTHO05D005719 6.1e-17 93.2 464 25.9
Eucgr.I01453 Eucalyptus grandis HOM05D000476 ORTHO05D005719 8.0e-17 92.8 621 25.3
FAN15G2981 Fragaria x ananassa HOM05D000476 ORTHO05D005719 1.0e-16 92.4 464 26.7
Prupe.7G174400 Prunus persica HOM05D000476 ORTHO05D005719 1.0e-16 92.4 567 24.2
Hund14172 Selenicereus undatus HOM05D000476 ORTHO05D005719 1.0e-16 92.4 623 24.4
FvH4_2g15580 Fragaria vesca HOM05D000476 ORTHO05D005719 1.4e-16 92.0 466 25.8
Prupe.7G172100 Prunus persica HOM05D000476 ORTHO05D005719 1.4e-16 92.0 368 28.8
Sabra04G0119100 Salix brachista HOM05D000476 ORTHO05D005719 1.4e-16 92.0 577 25.0
arahy.Tifrunner.gnm1.ann1.5E9YX9 Arachis hypogaea HOM05D000476 ORTHO05D005719 1.8e-16 91.7 360 28.9
Lj9C400T3 Lonicera japonica HOM05D000476 ORTHO05D005719 1.8e-16 91.7 467 26.8
EL10Ac9g21346 Beta vulgaris HOM05D000476 ORTHO05D005719 2.3e-16 91.3 511 25.6
Cpa.g.sc6.308 Carica papaya HOM05D000476 ORTHO05D005719 2.3e-16 91.3 506 26.3
Potri.005G108400 Populus trichocarpa HOM05D000476 ORTHO05D005719 2.3e-16 91.3 465 26.2
Solyc01g111740.3 Solanum lycopersicum HOM05D000476 ORTHO05D005719 3.0e-16 90.9 548 24.1
Thecc.01G012000 Theobroma cacao HOM05D000476 ORTHO05D005719 3.0e-16 90.9 428 27.1
AUR62010017 Chenopodium quinoa HOM05D000476 ORTHO05D005719 4.0e-16 90.5 561 24.6
Ah.01g023180 Amaranthus hybridus HOM05D000476 ORTHO05D005719 5.2e-16 90.1 529 24.8
FAN20G0044 Fragaria x ananassa HOM05D000476 ORTHO05D005719 5.2e-16 90.1 464 26.3
FAN24G1070 Fragaria x ananassa HOM05D000476 ORTHO05D005719 6.8e-16 89.7 466 25.5
Sabra05G0088800 Salix brachista HOM05D000476 ORTHO05D005719 8.8e-16 89.4 357 27.2
SalBow1G8296 Salvia bowleyana HOM05D000476 ORTHO05D005719 1.2e-15 89.0 463 25.5
vmacro02286 Vaccinium macrocarpon HOM05D000476 ORTHO05D005719 1.2e-15 89.0 534 25.7
Haze_03708 Corylus avellana HOM05D000476 ORTHO05D005719 1.5e-15 88.6 515 26.0
HanXRQChr09g0257241 Helianthus annuus HOM05D000476 ORTHO05D005719 2.0e-15 88.2 422 28.2
CANSAT01G2246 Cannabis sativa HOM05D000476 ORTHO05D005719 3.4e-15 87.4 294 31.0
Glyma.20G106700 Glycine max HOM05D000476 ORTHO05D005719 3.4e-15 87.4 559 25.0
Hma1.2p1_0163F.1_g072630 Hydrangea macrophylla HOM05D000476 ORTHO05D005719 4.4e-15 87.0 508 25.2
Lsat_1_v5_gn_4_144401 Lactuca sativa HOM05D000476 ORTHO05D005719 5.7e-15 86.7 466 27.3
Prupe.8G168100 Prunus persica HOM05D000476 ORTHO05D005719 5.7e-15 86.7 503 24.1
Phvul.007G018200 Phaseolus vulgaris HOM05D000476 ORTHO05D005719 7.5e-15 86.3 362 27.6
Sopen01g053780 Solanum pennellii HOM05D000476 ORTHO05D005719 7.5e-15 86.3 470 25.1
Cc09_g10250 Coffea canephora HOM05D000476 ORTHO05D005719 9.8e-15 85.9 455 24.2
Lj9A397G33 Lonicera japonica HOM05D000476 ORTHO05D005719 1.3e-14 85.5 483 25.5
ECA234G3651 Erigeron canadensis HOM05D000476 ORTHO05D005719 2.2e-14 84.7 465 24.7
Cfa005281 Carpinus fangiana HOM05D000476 ORTHO05D005719 3.7e-14 84.0 476 25.2
Migut.B00063 Erythranthe guttata HOM05D000476 ORTHO05D005719 3.7e-14 84.0 465 24.3
FAN23G2355 Fragaria x ananassa HOM05D000476 ORTHO05D005719 3.7e-14 84.0 472 26.1
SEGI_40428 Sequoiadendron giganteum HOM05D000476 ORTHO05D004987 3.7e-14 84.0 455 26.4
VMungo0720G1528 Vigna mungo HOM05D000476 ORTHO05D005719 3.7e-14 84.0 356 27.5
Medtr1g112850 Medicago truncatula HOM05D000476 ORTHO05D005719 4.9e-14 83.6 445 25.4
Actinidia20522 Actinidia chinensis HOM05D000476 ORTHO05D005719 6.3e-14 83.2 388 25.5
DCAR_022959 Daucus carota HOM05D000476 ORTHO05D005719 6.3e-14 83.2 487 24.8
TAR381G1633 Trochodendron aralioides HOM05D000476 ORTHO05D005719 6.3e-14 83.2 536 25.2
MD02G1014200 Malus domestica HOM05D000476 ORTHO05D005719 8.3e-14 82.8 488 27.9
THA.LOC104804321 Tarenaya hassleriana HOM05D000476 ORTHO05D005719 8.3e-14 82.8 443 26.0
MELO3C020830.2 Cucumis melo HOM05D000476 ORTHO05D005719 1.1e-13 82.4 396 26.5
Lalb_Chr21g0307031 Lupinus albus HOM05D000476 ORTHO05D005719 1.4e-13 82.0 465 25.8
Hund06447 Selenicereus undatus HOM05D000476 ORTHO05D005719 1.4e-13 82.0 481 25.2
CANSAT25G2378 Cannabis sativa HOM05D000476 ORTHO05D005719 1.8e-13 81.6 536 25.0
HanXRQChr10g0300811 Helianthus annuus HOM05D000476 ORTHO05D005719 1.8e-13 81.6 474 24.1
Glyma.10G283000 Glycine max HOM05D000476 ORTHO05D005719 2.4e-13 81.3 365 28.5
Os09g0542500 Oryza sativa ssp. japonica HOM05D000476 ORTHO05D005719 2.4e-13 81.3 517 26.3
Ca_03300_v3 Cicer arietinum L. HOM05D000476 ORTHO05D005719 4.1e-13 80.5 438 26.0
Atru.chr3.902 Acer truncatum HOM05D000476 ORTHO05D005719 5.4e-13 80.1 423 27.2
AUR62026229 Chenopodium quinoa HOM05D000476 ORTHO05D005719 5.4e-13 80.1 580 22.8
Lsat_1_v5_gn_4_71841 Lactuca sativa HOM05D000476 ORTHO05D005719 5.4e-13 80.1 463 24.6
QL11p051500 Quercus lobata HOM05D000476 ORTHO05D005719 5.4e-13 80.1 318 28.3
MD10G1248400 Malus domestica HOM05D000476 ORTHO05D245651 7.0e-13 79.7 556 26.1
MSTRG.16926 Avicennia marina HOM05D000476 ORTHO05D005719 1.2e-12 79.0 502 23.9
HPP92_020729 Vanilla planifolia HOM05D000476 ORTHO05D005719 1.2e-12 79.0 489 24.3
Actinidia18045 Actinidia chinensis HOM05D000476 ORTHO05D005719 1.6e-12 78.6 391 26.1
TPR.G2450 Trifolium pratense HOM05D000476 ORTHO05D005719 2.7e-12 77.8 380 27.1
Ciclev10027576m.g Citrus clementina HOM05D000476 ORTHO05D005719 4.5e-12 77.0 531 23.9
Ah.01g008190 Amaranthus hybridus HOM05D000476 ORTHO05D005719 5.9e-12 76.6 490 25.3
Duzib264G0964 Durio zibethinus HOM05D000476 ORTHO05D005719 5.9e-12 76.6 261 30.3
FvH4_4g36511 Fragaria vesca HOM05D000476 ORTHO05D045612 5.9e-12 76.6 377 27.9
COL.COLO4_17370 Corchorus olitorius HOM05D000476 ORTHO05D005719 1.0e-11 75.9 543 24.5
Sc18g0006370 Simmondsia chinensis HOM05D000476 ORTHO05D005719 1.0e-11 75.9 347 25.4
Sed0002256 Sechium edule HOM05D000476 ORTHO05D005719 1.7e-11 75.1 504 24.0
ATR0661G123 Amborella trichopoda HOM05D000476 ORTHO05D005719 5.0e-11 73.6 342 26.0
MD10G1127200 Malus domestica HOM05D000476 ORTHO05D005719 5.0e-11 73.6 536 23.1
Psat6g232560 Pisum sativum HOM05D000476 ORTHO05D005719 5.0e-11 73.6 444 25.0
unitig_0.g814 Utricularia gibba HOM05D000476 ORTHO05D005719 6.6e-11 73.2 433 24.7
ClCG02G012060 Citrullus lanatus HOM05D000476 ORTHO05D005719 1.9e-10 71.6 451 25.3
Lj5g0010360 Lotus japonicus HOM05D000476 ORTHO05D005719 1.9e-10 71.6 544 23.9
PGR142G3087 Punica granatum HOM05D000476 ORTHO05D005719 3.3e-10 70.9 285 27.0
CsaV3_2G016220 Cucumis sativus L. HOM05D000476 ORTHO05D005719 1.6e-09 68.6 451 24.6
Sed0017619 Sechium edule HOM05D000476 ORTHO05D005719 1.6e-09 68.6 459 25.5
CDE09G0394 Ceratophyllum demersum HOM05D000476 ORTHO05D005719 2.1e-09 68.2 484 24.4
SEGI_17897 Sequoiadendron giganteum HOM05D000476 ORTHO05D005719 2.1e-09 68.2 452 23.0
unitig_0.g811 Utricularia gibba HOM05D000476 ORTHO05D002733 2.8e-09 67.8 256 27.3
TPR.G2490 Trifolium pratense HOM05D000476 ORTHO05D005719 1.4e-08 65.5 260 28.1
Actinidia28216 Actinidia chinensis HOM05D000476 ORTHO05D004987 2.3e-08 64.7 317 26.5
EL10Ac6g13329 Beta vulgaris HOM05D000476 ORTHO05D005719 2.3e-08 64.7 637 20.6
Ah.02g129130 Amaranthus hybridus HOM05D000476 ORTHO05D005719 3.0e-08 64.3 351 24.8
MSTRG.16948 Avicennia marina HOM05D000476 ORTHO05D002733 6.8e-08 63.2 254 25.6
Nn8g40976 Nelumbo nucifera HOM05D000476 ORTHO05D004987 6.8e-08 63.2 384 24.5
TPR.G9019 Trifolium pratense HOM05D000476 ORTHO05D004987 2.6e-07 61.2 290 26.2
Medtr2g036920 Medicago truncatula HOM05D000476 ORTHO05D004987 4.4e-07 60.5 280 26.1
Cpa.g.sc20.181 Carica papaya HOM05D000476 ORTHO05D002733 5.7e-07 60.1 256 26.2
Lalb_Chr20g0116291 Lupinus albus HOM05D000476 ORTHO05D004987 7.5e-07 59.7 279 28.3
TAR376G1218 Trochodendron aralioides HOM05D000476 ORTHO05D004793 7.5e-07 59.7 268 25.7
Glyma.09G058000 Glycine max HOM05D000476 ORTHO05D004987 9.8e-07 59.3 338 24.6
HanXRQChr10g0309241 Helianthus annuus HOM05D000476 ORTHO05D004987 9.8e-07 59.3 278 25.9
Sabra06G0058300 Salix brachista HOM05D000476 ORTHO05D004987 9.8e-07 59.3 272 27.6
SEGI_12122 Sequoiadendron giganteum HOM05D000476 ORTHO05D006845 9.8e-07 59.3 363 22.0
COL.COLO4_29314 Corchorus olitorius HOM05D000476 ORTHO05D004987 1.3e-06 58.9 272 27.6
VMungo1309G0449 Vigna mungo HOM05D000476 ORTHO05D004987 1.3e-06 58.9 337 24.0
Psat1g145880 Pisum sativum HOM05D000476 ORTHO05D004987 1.7e-06 58.5 349 24.1
Ciclev10007457m.g Citrus clementina HOM05D000476 ORTHO05D004987 2.2e-06 58.2 272 28.7
Cc06_g21650 Coffea canephora HOM05D000476 ORTHO05D004987 2.2e-06 58.2 288 27.1
Prupe.5G138800 Prunus persica HOM05D000476 ORTHO05D005719 2.2e-06 58.2 114 35.1
Actinidia29958 Actinidia chinensis HOM05D000476 ORTHO05D004987 2.9e-06 57.8 233 29.2
Ca_02043_v3 Cicer arietinum L. HOM05D000476 ORTHO05D004987 2.9e-06 57.8 349 24.4
Ca_02047_v3 Cicer arietinum L. HOM05D000476 ORTHO05D004987 2.9e-06 57.8 349 24.4
ECA234G2540 Erigeron canadensis HOM05D000476 ORTHO05D004987 2.9e-06 57.8 281 27.0
Ah.09g230180 Amaranthus hybridus HOM05D000476 ORTHO05D004987 3.7e-06 57.4 272 28.3
FAN22G2045 Fragaria x ananassa HOM05D011962 ORTHO05D016625 3.7e-06 57.4 504 24.4
Hund26320 Selenicereus undatus HOM05D000476 ORTHO05D004987 3.7e-06 57.4 312 26.0
TWI63G1758 Tripterygium wilfordii HOM05D000476 ORTHO05D004987 3.7e-06 57.4 279 26.9
Duzib150G0836 Durio zibethinus HOM05D000476 ORTHO05D004987 4.9e-06 57.0 272 27.9
Eucgr.D01227 Eucalyptus grandis HOM05D000818 ORTHO05D001324 4.9e-06 57.0 273 24.5
Lj6g0013002 Lotus japonicus HOM05D000476 ORTHO05D004987 4.9e-06 57.0 348 24.4
Atru.chr7.818 Acer truncatum HOM05D000476 ORTHO05D004987 6.4e-06 56.6 272 26.5
Lsat_1_v5_gn_5_82221 Lactuca sativa HOM05D000476 ORTHO05D004987 6.4e-06 56.6 315 26.3
Thecc.09G181300 Theobroma cacao HOM05D000476 ORTHO05D004987 6.4e-06 56.6 274 27.7
Nn5g29062 Nelumbo nucifera HOM05D000476 ORTHO05D006845 8.3e-06 56.2 276 25.7
Phvul.002G254100 Phaseolus vulgaris HOM05D000476 ORTHO05D006845 8.3e-06 56.2 263 26.2


User provided reference genes

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