Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN11G0414 Fragaria x ananassa HOM05D003815 ORTHO05D004580 5.8e-195 684.1 359 100.0
FAN16G0735 Fragaria x ananassa HOM05D003815 ORTHO05D004580 1.6e-157 559.7 305 96.4
FAN21G2274 Fragaria x ananassa HOM05D003815 ORTHO05D004580 1.3e-151 540.0 282 97.5
RcHm_v2.0_Chr5g0033991 Rosa chinensis HOM05D003815 ORTHO05D004580 1.1e-150 537.0 283 94.3
MD03G1226400 Malus domestica HOM05D003815 ORTHO05D004580 2.1e-144 516.2 283 90.1
Prupe.4G183000 Prunus persica HOM05D003815 ORTHO05D004580 1.5e-142 510.0 302 86.8
MD11G1244700 Malus domestica HOM05D003815 ORTHO05D004580 1.3e-141 506.9 283 87.6
BcaC01g01350 Brassica carinata HOM05D003815 ORTHO05D004580 3.4e-139 498.8 281 86.5
C03p90950 Brassica napus HOM05D003815 ORTHO05D004580 3.4e-139 498.8 281 86.5
BolC3t21419H Brassica oleracea HOM05D003815 ORTHO05D004580 3.4e-139 498.8 281 86.5
Thecc.07G083700 Theobroma cacao HOM05D003815 ORTHO05D004580 5.9e-139 498.0 302 84.4
A08p01870 Brassica napus HOM05D003815 ORTHO05D004580 1.0e-138 497.3 281 86.1
BraA08t32239Z Brassica rapa HOM05D003815 ORTHO05D004580 1.0e-138 497.3 281 86.1
Eucgr.F01118 Eucalyptus grandis HOM05D003815 ORTHO05D004580 1.0e-138 497.3 283 86.6
Thhalv10011698m.g Eutrema salsugineum HOM05D003815 ORTHO05D004580 1.0e-138 497.3 283 85.5
FAN25G2093 Fragaria x ananassa HOM05D003815 ORTHO05D004580 1.0e-138 497.3 275 95.3
BcaB04g17128 Brassica carinata HOM05D003815 ORTHO05D004580 3.8e-138 495.4 281 85.8
Sabra16G0263000 Salix brachista HOM05D003815 ORTHO05D004580 3.8e-138 495.4 282 87.2
Cfa020596 Carpinus fangiana HOM05D003815 ORTHO05D004580 8.5e-138 494.2 281 86.8
Glyma.12G151500 Glycine max HOM05D003815 ORTHO05D004580 1.1e-137 493.8 283 86.2
Sp1g39560 Schrenkiella parvula HOM05D003815 ORTHO05D004580 1.4e-137 493.4 280 86.1
Manes.03G110800 Manihot esculenta HOM05D003815 ORTHO05D004580 1.9e-137 493.0 281 87.5
Gorai.009G389800 Gossypium raimondii HOM05D003815 ORTHO05D004580 2.5e-137 492.7 282 85.8
QL08p021520 Quercus lobata HOM05D003815 ORTHO05D004580 2.5e-137 492.7 279 86.7
A05p18730 Brassica napus HOM05D003815 ORTHO05D004580 4.2e-137 491.9 283 84.8
Gohir.D05G357300 Gossypium hirsutum HOM05D003815 ORTHO05D004580 4.2e-137 491.9 282 85.8
Phvul.011G157900 Phaseolus vulgaris HOM05D003815 ORTHO05D004580 4.2e-137 491.9 283 85.2
Potri.011G120100 Populus trichocarpa HOM05D003815 ORTHO05D004580 4.2e-137 491.9 283 86.2
AT1G53000 Arabidopsis thaliana HOM05D003815 ORTHO05D004580 5.5e-137 491.5 283 85.2
QL05p086088 Quercus lobata HOM05D003815 ORTHO05D004580 7.2e-137 491.1 279 86.7
AL1G61340 Arabidopsis lyrata HOM05D003815 ORTHO05D004580 9.4e-137 490.7 280 85.7
TWI38G0676 Tripterygium wilfordii HOM05D003815 ORTHO05D004580 9.4e-137 490.7 283 84.5
Glyma.06G245100 Glycine max HOM05D003815 ORTHO05D004580 1.2e-136 490.3 283 85.2
Gohir.A04G029700 Gossypium hirsutum HOM05D003815 ORTHO05D004580 1.2e-136 490.3 283 85.2
Sabra11G0104500 Salix brachista HOM05D003815 ORTHO05D004580 1.2e-136 490.3 283 85.5
Carub.0001s4215 Capsella rubella HOM05D003815 ORTHO05D004580 2.1e-136 489.6 283 84.5
BcaB02g10966 Brassica carinata HOM05D003815 ORTHO05D004580 2.7e-136 489.2 283 83.7
Nn1g06558 Nelumbo nucifera HOM05D003815 ORTHO05D004580 3.6e-136 488.8 288 85.1
Ciclev10009061m.g Citrus clementina HOM05D003815 ORTHO05D004580 4.7e-136 488.4 283 84.5
Potri.001G400900 Populus trichocarpa HOM05D003815 ORTHO05D004580 6.1e-136 488.0 283 86.2
Lalb_Chr03g0030621 Lupinus albus HOM05D003815 ORTHO05D004580 7.9e-136 487.6 283 84.1
Atru.chr2.2652 Acer truncatum HOM05D003815 ORTHO05D004580 1.4e-135 486.9 283 84.8
TWI38G0767 Tripterygium wilfordii HOM05D003815 ORTHO05D004580 1.4e-135 486.9 281 84.7
CARHR043220 Cardamine hirsuta HOM05D003815 ORTHO05D004580 2.3e-135 486.1 280 85.0
BraA05t20769Z Brassica rapa HOM05D003815 ORTHO05D004580 5.1e-135 485.0 281 84.0
PGSC0003DMG400025035 Solanum tuberosum HOM05D003815 ORTHO05D004580 5.1e-135 485.0 280 85.0
THA.LOC104818073 Tarenaya hassleriana HOM05D003815 ORTHO05D004580 5.1e-135 485.0 283 83.4
TAR629G1246 Trochodendron aralioides HOM05D003815 ORTHO05D004580 5.1e-135 485.0 286 85.0
Lj3g0026961 Lotus japonicus HOM05D003815 ORTHO05D004580 8.8e-135 484.2 283 83.0
Aa31LG10G2090 Aethionema arabicum HOM05D003815 ORTHO05D004580 1.1e-134 483.8 280 84.3
PGR083G0800 Punica granatum HOM05D003815 ORTHO05D004580 1.1e-134 483.8 284 84.5
Nn1g04083 Nelumbo nucifera HOM05D003815 ORTHO05D004580 2.0e-134 483.0 286 84.3
C06p14350 Brassica napus HOM05D003815 ORTHO05D004580 2.6e-134 482.6 277 85.6
Lj3g0002488 Lotus japonicus HOM05D003815 ORTHO05D004580 3.3e-134 482.3 283 83.0
Duzib170G0119 Durio zibethinus HOM05D003815 ORTHO05D004580 4.4e-134 481.9 282 83.7
Medtr1g057850 Medicago truncatula HOM05D003815 ORTHO05D004580 4.4e-134 481.9 280 83.6
Nitab4.5_0002383g0120 Nicotiana tabacum HOM05D003815 ORTHO05D004580 7.4e-134 481.1 307 81.1
arahy.Tifrunner.gnm1.ann1.46T9HD Arachis hypogaea HOM05D003815 ORTHO05D004580 1.3e-133 480.3 283 82.3
Psat5g229040 Pisum sativum HOM05D003815 ORTHO05D004580 1.3e-133 480.3 281 83.6
COL.COLO4_09397 Corchorus olitorius HOM05D003815 ORTHO05D004580 1.7e-133 479.9 275 86.2
Dinv04311 Davidia involucrata HOM05D003815 ORTHO05D004580 1.7e-133 479.9 286 84.3
vmacro11847 Vaccinium macrocarpon HOM05D003815 ORTHO05D004580 2.2e-133 479.6 282 84.8
GSVIVG01014351001 Vitis vinifera HOM05D003815 ORTHO05D004580 2.2e-133 479.6 285 82.5
TPR.G454 Trifolium pratense HOM05D003815 ORTHO05D004580 3.7e-133 478.8 282 84.4
PGR004G1265 Punica granatum HOM05D003815 ORTHO05D004580 4.8e-133 478.4 303 81.5
CSS0007181 Camellia sinensis var. sinensis HOM05D003815 ORTHO05D004580 8.2e-133 477.6 306 80.7
Sc07g0002580 Simmondsia chinensis HOM05D003815 ORTHO05D004580 1.1e-132 477.2 278 84.5
Nitab4.5_0001551g0080 Nicotiana tabacum HOM05D003815 ORTHO05D004580 1.8e-132 476.5 280 82.9
Sopen10g002890 Solanum pennellii HOM05D003815 ORTHO05D004580 1.8e-132 476.5 280 83.9
Nitab4.5_0000207g0160 Nicotiana tabacum HOM05D003815 ORTHO05D004580 3.1e-132 475.7 282 82.6
CSS0031480 Camellia sinensis var. sinensis HOM05D003815 ORTHO05D004580 4.1e-132 475.3 285 82.8
MELO3C016515.2 Cucumis melo HOM05D003815 ORTHO05D004580 4.1e-132 475.3 298 79.9
Solyc10g006980.3 Solanum lycopersicum HOM05D003815 ORTHO05D004580 4.1e-132 475.3 282 84.0
Nitab4.5_0003688g0100 Nicotiana tabacum HOM05D003815 ORTHO05D004580 5.3e-132 474.9 279 82.8
Aqoxy1G02432 Aquilegia oxysepala HOM05D003815 ORTHO05D004580 2.6e-131 472.6 284 83.5
Lalb_Chr01g0006511 Lupinus albus HOM05D003815 ORTHO05D004580 3.5e-131 472.2 283 81.6
PSO541G6182 Papaver somniferum HOM05D003815 ORTHO05D004580 4.5e-131 471.9 283 83.4
Peaxi162Scf00027g02616 Petunia axillaris HOM05D003815 ORTHO05D004580 5.9e-131 471.5 278 83.1
CAN.G162.63 Capsicum annuum HOM05D003815 ORTHO05D004580 1.0e-130 470.7 280 82.1
PSO675G7971 Papaver somniferum HOM05D003815 ORTHO05D004580 1.7e-130 469.9 283 83.0
CsaV3_3G006290 Cucumis sativus L. HOM05D003815 ORTHO05D004580 2.2e-130 469.5 298 78.5
MBI07_g32649_MAGBIO Magnolia biondii HOM05D003815 ORTHO05D004580 5.0e-130 468.4 294 81.3
Oeu005415.1 Olea europaea HOM05D003815 ORTHO05D004580 6.5e-130 468.0 297 80.1
DCAR_014380 Daucus carota HOM05D003815 ORTHO05D004580 1.1e-129 467.2 283 82.7
Migut.M00813 Erythranthe guttata HOM05D003815 ORTHO05D004580 2.5e-129 466.1 280 82.1
MSTRG.15225 Avicennia marina HOM05D003815 ORTHO05D004580 2.1e-128 463.0 282 80.1
EL10Ac4g08152 Beta vulgaris HOM05D003815 ORTHO05D004580 2.1e-128 463.0 299 77.9
SGA_v2.0_scaffold73G24269 Striga asiatica HOM05D003815 ORTHO05D004580 3.6e-128 462.2 295 81.7
ECA238G0528 Erigeron canadensis HOM05D003815 ORTHO05D004580 5.2e-127 458.4 284 81.3
Sed0012787 Sechium edule HOM05D003815 ORTHO05D004580 8.8e-127 457.6 280 81.4
ATR0605G309 Amborella trichopoda HOM05D003815 ORTHO05D004580 5.7e-126 454.9 282 80.1
Cc05_g12120 Coffea canephora HOM05D003815 ORTHO05D004580 5.7e-126 454.9 280 81.8
Duzib213G0989 Durio zibethinus HOM05D003815 ORTHO05D004580 7.4e-126 454.5 282 81.6
Hund02213 Selenicereus undatus HOM05D003815 ORTHO05D004580 4.8e-125 451.8 282 79.1
QL05p040244 Quercus lobata HOM05D003815 ORTHO05D004580 6.3e-125 451.4 284 80.3
GSVIVG01005203001 Vitis vinifera HOM05D003815 ORTHO05D004580 1.8e-124 449.9 283 78.8
Actinidia01882 Actinidia chinensis HOM05D003815 ORTHO05D004580 2.4e-124 449.5 288 78.1
arahy.Tifrunner.gnm1.ann1.NKF69P Arachis hypogaea HOM05D003815 ORTHO05D004580 2.4e-124 449.5 283 78.1
CDE10G1101 Ceratophyllum demersum HOM05D003815 ORTHO05D004580 2.4e-124 449.5 279 81.0
HanXRQChr11g0328431 Helianthus annuus HOM05D003815 ORTHO05D004580 2.4e-124 449.5 287 79.4
Cfa000456 Carpinus fangiana HOM05D003815 ORTHO05D004580 3.1e-124 449.1 297 76.4
ClCG10G006920 Citrullus lanatus HOM05D003815 ORTHO05D004580 3.1e-124 449.1 311 74.9
CAN.G1110.56 Capsicum annuum HOM05D003815 ORTHO05D004580 4.1e-124 448.7 265 83.0
AUR62029379 Chenopodium quinoa HOM05D003815 ORTHO05D004580 4.1e-124 448.7 282 79.1
FvH4_3g20180 Fragaria vesca HOM05D003815 ORTHO05D004580 1.2e-123 447.2 240 97.5
Lsat_1_v5_gn_7_21261 Lactuca sativa HOM05D003815 ORTHO05D004580 1.2e-123 447.2 286 78.7
CiPaw.09G059900 Carya illinoinensis HOM05D003815 ORTHO05D004580 2.6e-123 446.0 280 78.6
Lsat_1_v5_gn_7_105160 Lactuca sativa HOM05D003815 ORTHO05D004580 7.7e-123 444.5 284 78.9
Ah.06g184010 Amaranthus hybridus HOM05D003815 ORTHO05D004580 2.2e-122 443.0 281 78.3
HPP92_021319 Vanilla planifolia HOM05D003815 ORTHO05D004580 2.2e-122 443.0 289 77.2
Lj8A54T73 Lonicera japonica HOM05D003815 ORTHO05D004580 2.9e-122 442.6 310 75.2
unitig_899.g15563 Utricularia gibba HOM05D003815 ORTHO05D004580 2.9e-122 442.6 286 76.2
RcHm_v2.0_Chr5g0008351 Rosa chinensis HOM05D003815 ORTHO05D004580 6.5e-122 441.4 284 78.5
Peaxi162Scf00069g01341 Petunia axillaris HOM05D003815 ORTHO05D004580 3.2e-121 439.1 278 79.5
Zm00001eb343610 Zea mays HOM05D003815 ORTHO05D004580 5.5e-121 438.3 295 74.2
Lj1A1206T62 Lonicera japonica HOM05D003815 ORTHO05D004580 3.6e-120 435.6 304 74.0
Haze_09417 Corylus avellana HOM05D003815 ORTHO05D004580 6.7e-119 431.4 363 64.7
SEGI_36185 Sequoiadendron giganteum HOM05D003815 ORTHO05D004580 6.7e-119 431.4 281 76.9
Os05g0561500 Oryza sativa ssp. japonica HOM05D003815 ORTHO05D004580 8.8e-119 431.0 284 76.1
Actinidia09679 Actinidia chinensis HOM05D003815 ORTHO05D004580 1.5e-118 430.3 256 84.0
AUR62034260 Chenopodium quinoa HOM05D003815 ORTHO05D004580 6.3e-117 424.9 282 77.0
BcaC08g44025 Brassica carinata HOM05D003815 ORTHO05D004580 1.1e-116 424.1 274 77.4
SalBow8G0761 Salvia bowleyana HOM05D003815 ORTHO05D004580 1.0e-114 417.5 253 81.8
CiPaw.11G168500 Carya illinoinensis HOM05D003815 ORTHO05D004580 9.8e-110 401.0 221 88.7
Haze_06461 Corylus avellana HOM05D003815 ORTHO05D004580 4.8e-109 398.7 280 73.6
SGA_v2.0_scaffold34G13823 Striga asiatica HOM05D003815 ORTHO05D004580 8.3e-109 397.9 244 81.1
Rhsim06G0197600 Rhododendron simsii HOM05D003815 ORTHO05D004580 1.4e-108 397.1 221 87.8
Pp3c7_2170 Physcomitrium patens HOM05D003815 ORTHO05D004580 2.7e-107 392.9 278 69.1
Ca_12190_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 1.7e-106 390.2 218 86.7
Ca_30578_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 1.7e-106 390.2 218 86.7
Prupe.4G047000 Prunus persica HOM05D003815 ORTHO05D004580 2.3e-106 389.8 253 76.7
AagrBONN_evm.TU.Sc2ySwM_344.3202 Anthoceros agrestis HOM05D003815 ORTHO05D004580 2.5e-105 386.3 250 72.8
SMO196G0043 Selaginella moellendorffii HOM05D003815 ORTHO05D004580 2.1e-104 383.3 251 72.9
Mapoly0026s0027 Marchantia polymorpha HOM05D003815 ORTHO05D004580 1.0e-103 380.9 278 64.4
CBR_g31446 Chara braunii HOM05D003815 ORTHO05D004580 2.7e-99 366.3 255 68.2
Actinidia12813 Actinidia chinensis HOM05D003815 ORTHO05D004580 2.3e-98 363.2 291 67.0
Dinv40557 Davidia involucrata HOM05D003815 ORTHO05D004580 1.4e-95 354.0 200 85.0
PGSC0003DMG402012419 Solanum tuberosum HOM05D003815 ORTHO05D004580 2.5e-89 333.2 215 78.6
Duzib064G0003 Durio zibethinus HOM05D003815 ORTHO05D004580 1.4e-87 327.4 182 87.9
Cpa.g.sc80.53 Carica papaya HOM05D003815 ORTHO05D004580 1.5e-86 323.9 182 85.2
Oeu060549.1 Olea europaea HOM05D003815 ORTHO05D004580 6.4e-85 318.5 208 79.3
Duzib064G0004 Durio zibethinus HOM05D003815 ORTHO05D004580 1.8e-79 300.4 174 83.9
PSO017G1411 Papaver somniferum HOM05D003815 ORTHO05D004580 1.4e-76 290.8 183 79.8
Eucgr.F01114 Eucalyptus grandis HOM05D003815 ORTHO05D004580 8.6e-74 281.6 221 68.8
Lj3g0013472 Lotus japonicus HOM05D003815 ORTHO05D004580 7.6e-70 268.5 152 85.5
AagrBONN_evm.TU.Sc2ySwM_340.276 Anthoceros agrestis HOM05D003815 ORTHO05D004580 1.1e-65 254.6 194 65.5
ATR0730G188 Amborella trichopoda HOM05D003815 ORTHO05D004580 4.2e-60 236.1 146 79.5
BcaB07g33367 Brassica carinata HOM05D003815 ORTHO05D004580 4.8e-56 222.6 209 60.3
Pp3c11_23350 Physcomitrium patens HOM05D003815 ORTHO05D004580 2.8e-48 196.8 242 47.9
C07p00250 Brassica napus HOM05D003815 ORTHO05D004580 3.8e-45 186.4 119 74.8
Haze_06417 Corylus avellana HOM05D003815 ORTHO05D004580 5.5e-44 182.6 158 61.4
Haze_06421 Corylus avellana HOM05D003815 ORTHO05D004580 1.6e-43 181.0 136 69.9
Lj8A156T78 Lonicera japonica HOM05D003815 ORTHO05D004580 1.3e-40 171.4 179 56.4
BolC7t40476H Brassica oleracea HOM05D003815 ORTHO05D004580 6.9e-39 165.6 105 77.1
Hma1.2p1_0000F.1_g000160 Hydrangea macrophylla HOM05D003815 ORTHO05D004580 2.1e-35 154.1 86 82.6
BcaC06g36757 Brassica carinata HOM05D003815 ORTHO05D004580 5.1e-34 149.4 96 76.0
MCO07G610 Micromonas commoda HOM05D003815 ORTHO05D004580 5.3e-31 139.4 298 33.2
BolC6t36614H Brassica oleracea HOM05D003815 ORTHO05D004580 1.5e-30 137.9 82 82.9
Actinidia05634 Actinidia chinensis HOM05D003815 ORTHO05D004580 1.1e-28 131.7 88 75.0
Lj3g0015923 Lotus japonicus HOM05D003815 ORTHO05D004580 1.4e-26 124.8 191 43.5
CBR_g29613 Chara braunii HOM05D003815 ORTHO05D004580 1.1e-25 121.7 170 41.2
BcaC08g43686 Brassica carinata HOM05D003815 ORTHO05D004580 5.3e-23 112.8 66 83.3
BolC6t36186H Brassica oleracea HOM05D003815 ORTHO05D004580 5.3e-23 112.8 66 83.3
Ca_12192_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 3.0e-18 97.1 62 79.0
Ca_30580_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 3.0e-18 97.1 62 79.0
PSO017G7235 Papaver somniferum HOM05D003815 ORTHO05D004580 6.3e-16 89.4 53 77.4
Sopen05g017440 Solanum pennellii HOM05D003815 ORTHO05D004580 7.0e-15 85.9 158 37.3
Sopen05g018740 Solanum pennellii HOM05D000002 ORTHO05D000001 5.9e-14 82.8 85 50.6
Oeu044430.1 Olea europaea HOM05D003815 ORTHO05D004580 1.0e-13 82.0 79 54.4
BolC9t59438H Brassica oleracea HOM05D003815 ORTHO05D004580 1.2e-11 75.1 92 46.7
ATR0730G237 Amborella trichopoda HOM05D003815 ORTHO05D004580 2.1e-11 74.3 62 64.5
Lj8C156T6 Lonicera japonica HOM05D003815 ORTHO05D004580 4.7e-11 73.2 60 70.0
COL.COLO4_36023 Corchorus olitorius HOM05D006127 ORTHO05D161883 1.0e-10 72.0 59 62.7
C09p66180 Brassica napus HOM05D003815 ORTHO05D004580 1.4e-10 71.6 103 41.7
Solyc04g079020.4 Solanum lycopersicum HOM05D003815 ORTHO05D004580 2.2e-08 64.3 110 38.2
Oeu026881.1 Olea europaea HOM05D001611 ORTHO05D001464 1.8e-07 61.2 57 50.9
COL.COLO4_31682 Corchorus olitorius HOM05D000007 ORTHO05D000017 3.1e-07 60.5 43 72.1
Actinidia24031 Actinidia chinensis HOM05D003815 ORTHO05D004580 2.0e-06 57.8 34 79.4
Actinidia16545 Actinidia chinensis HOM05D003815 ORTHO05D056144 3.5e-06 57.0 53 58.5


User provided reference genes

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