Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN11G0404 Fragaria x ananassa HOM05D005349 ORTHO05D006901 5.4e-92 340.9 163 100.0
FvH4_3g38110 Fragaria vesca HOM05D005349 ORTHO05D006901 3.5e-91 338.2 163 99.4
FAN16G1977 Fragaria x ananassa HOM05D005349 ORTHO05D006901 6.7e-90 334.0 163 98.2
RcHm_v2.0_Chr5g0068461 Rosa chinensis HOM05D005349 ORTHO05D006901 8.7e-90 333.6 163 96.9
MD03G1077000 Malus domestica HOM05D005349 ORTHO05D006901 6.9e-79 297.4 162 85.2
MD11G1081300 Malus domestica HOM05D005349 ORTHO05D006901 1.2e-78 296.6 162 85.2
Prupe.6G061600 Prunus persica HOM05D005349 ORTHO05D006901 3.4e-78 295.0 159 86.8
Thecc.09G306800 Theobroma cacao HOM05D005349 ORTHO05D006901 3.4e-78 295.0 163 84.7
QL01p027076 Quercus lobata HOM05D005349 ORTHO05D006901 1.0e-77 293.5 162 84.6
CiPaw.13G081900 Carya illinoinensis HOM05D005349 ORTHO05D006901 1.7e-77 292.7 163 82.2
COL.COLO4_19094 Corchorus olitorius HOM05D005349 ORTHO05D006901 2.2e-77 292.4 163 84.0
Gorai.013G260800 Gossypium raimondii HOM05D005349 ORTHO05D006901 4.9e-77 291.2 163 83.4
Gohir.A13G225100 Gossypium hirsutum HOM05D005349 ORTHO05D006901 6.5e-77 290.8 163 83.4
Gohir.D13G230100 Gossypium hirsutum HOM05D005349 ORTHO05D006901 2.5e-76 288.9 163 82.8
Duzib168G1908 Durio zibethinus HOM05D005349 ORTHO05D006901 4.2e-76 288.1 163 83.4
Lj4P290T21 Lonicera japonica HOM05D005349 ORTHO05D006901 7.1e-76 287.3 163 82.8
Cfa011642 Carpinus fangiana HOM05D005349 ORTHO05D006901 1.2e-75 286.6 163 81.0
Manes.17G019100 Manihot esculenta HOM05D005349 ORTHO05D006901 2.1e-75 285.8 163 81.6
Haze_24248 Corylus avellana HOM05D005349 ORTHO05D006901 3.5e-75 285.0 163 81.0
Dinv28589 Davidia involucrata HOM05D005349 ORTHO05D006901 6.1e-75 284.3 163 81.6
Dinv28608 Davidia involucrata HOM05D005349 ORTHO05D006901 6.1e-75 284.3 163 81.6
CSS0008956 Camellia sinensis var. sinensis HOM05D005349 ORTHO05D006901 1.9e-73 279.3 163 81.0
Cpa.g.sc112.60 Carica papaya HOM05D005349 ORTHO05D006901 1.3e-72 276.6 147 87.8
THA.LOC104810731 Tarenaya hassleriana HOM05D005349 ORTHO05D006901 3.7e-72 275.0 163 77.9
Potri.009G042300 Populus trichocarpa HOM05D005349 ORTHO05D006901 1.1e-71 273.5 163 77.9
Sabra09G0029800 Salix brachista HOM05D005349 ORTHO05D006901 2.4e-71 272.3 163 77.3
PGR102G2751 Punica granatum HOM05D005349 ORTHO05D006901 5.3e-71 271.2 150 83.3
Oeu049278.1 Olea europaea HOM05D005349 ORTHO05D006901 1.2e-70 270.0 163 76.7
PGR102G2487 Punica granatum HOM05D005349 ORTHO05D006901 1.5e-70 269.6 163 77.9
Hma1.2p1_3368F.1_g335610 Hydrangea macrophylla HOM05D005349 ORTHO05D006901 4.5e-70 268.1 151 80.1
Migut.I00090 Erythranthe guttata HOM05D005349 ORTHO05D006901 5.9e-70 267.7 163 75.5
Eucgr.B02277 Eucalyptus grandis HOM05D005349 ORTHO05D006901 5.9e-70 267.7 163 77.9
CAN.G206.119 Capsicum annuum HOM05D005349 ORTHO05D006901 1.0e-69 266.9 154 81.2
Oeu009384.1 Olea europaea HOM05D005349 ORTHO05D006901 1.3e-69 266.5 146 83.6
Sed0012895 Sechium edule HOM05D005349 ORTHO05D006901 1.7e-69 266.2 163 74.2
Solyc02g087650.4 Solanum lycopersicum HOM05D005349 ORTHO05D006901 1.7e-69 266.2 156 79.5
Sp6g20620 Schrenkiella parvula HOM05D005349 ORTHO05D006901 2.2e-69 265.8 163 74.2
Hma1.2p1_0543F.1_g175200 Hydrangea macrophylla HOM05D005349 ORTHO05D006901 2.9e-69 265.4 151 79.5
Rhsim01G0234700 Rhododendron simsii HOM05D005349 ORTHO05D006901 5.0e-69 264.6 163 76.1
Sopen02g032400 Solanum pennellii HOM05D005349 ORTHO05D006901 5.0e-69 264.6 155 78.7
AL8G35250 Arabidopsis lyrata HOM05D005349 ORTHO05D006901 6.5e-69 264.2 163 73.6
CsaV3_1G035930 Cucumis sativus L. HOM05D005349 ORTHO05D006901 6.5e-69 264.2 163 74.8
Aa31LG1G11620 Aethionema arabicum HOM05D005349 ORTHO05D006901 8.5e-69 263.8 163 74.8
Nitab4.5_0002265g0210 Nicotiana tabacum HOM05D005349 ORTHO05D006901 1.1e-68 263.5 154 78.6
Thhalv10014880m.g Eutrema salsugineum HOM05D005349 ORTHO05D006901 1.4e-68 263.1 163 73.6
BolC3t13854H Brassica oleracea HOM05D005349 ORTHO05D006901 3.2e-68 261.9 163 73.0
BraA03t10509Z Brassica rapa HOM05D005349 ORTHO05D006901 3.2e-68 261.9 163 73.0
DCAR_005899 Daucus carota HOM05D005349 ORTHO05D006901 3.2e-68 261.9 163 73.6
Nitab4.5_0000021g0450 Nicotiana tabacum HOM05D001216 ORTHO05D008355 3.2e-68 261.9 152 78.3
Hund18861 Selenicereus undatus HOM05D005349 ORTHO05D006901 3.2e-68 261.9 163 76.1
Carub.0008s1956 Capsella rubella HOM05D005349 ORTHO05D006901 4.2e-68 261.5 163 73.0
Nn2g13609 Nelumbo nucifera HOM05D005349 ORTHO05D006901 5.5e-68 261.2 148 81.8
AUR62001690 Chenopodium quinoa HOM05D005349 ORTHO05D006901 7.2e-68 260.8 163 76.1
DCAR_007395 Daucus carota HOM05D005349 ORTHO05D006901 7.2e-68 260.8 163 73.6
Peaxi162Scf00129g00059 Petunia axillaris HOM05D005349 ORTHO05D006901 7.2e-68 260.8 149 79.9
MELO3C020577.2 Cucumis melo HOM05D005349 ORTHO05D006901 9.4e-68 260.4 163 73.6
BcaC03g14066 Brassica carinata HOM05D005349 ORTHO05D006901 1.2e-67 260.0 163 73.0
BraA02t05823Z Brassica rapa HOM05D005349 ORTHO05D006901 1.2e-67 260.0 163 72.4
AUR62020092 Chenopodium quinoa HOM05D005349 ORTHO05D006901 1.2e-67 260.0 163 76.1
Cc01_g13820 Coffea canephora HOM05D005349 ORTHO05D006901 1.2e-67 260.0 163 75.5
PGSC0003DMG400001310 Solanum tuberosum HOM05D005349 ORTHO05D006901 1.2e-67 260.0 148 81.1
PGSC0003DMG400001415 Solanum tuberosum HOM05D005349 ORTHO05D006901 1.2e-67 260.0 148 81.1
AT5G58920 Arabidopsis thaliana HOM05D005349 ORTHO05D006901 1.6e-67 259.6 163 72.4
Sc12g0000960 Simmondsia chinensis HOM05D005349 ORTHO05D006901 2.7e-67 258.8 163 74.8
BolC2t07413H Brassica oleracea HOM05D005349 ORTHO05D006901 4.6e-67 258.1 163 72.4
TAR369G0898 Trochodendron aralioides HOM05D005349 ORTHO05D006901 4.6e-67 258.1 163 73.0
Lalb_Chr17g0344951 Lupinus albus HOM05D005349 ORTHO05D006901 6.1e-67 257.7 163 76.1
CARHR272860 Cardamine hirsuta HOM05D005349 ORTHO05D006901 7.9e-67 257.3 163 70.6
ClCG03G001010 Citrullus lanatus HOM05D005349 ORTHO05D006901 1.4e-66 256.5 163 74.8
arahy.Tifrunner.gnm1.ann1.AUQG9H Arachis hypogaea HOM05D005349 ORTHO05D006901 3.9e-66 255.0 143 82.5
arahy.Tifrunner.gnm1.ann1.S3TFE0 Arachis hypogaea HOM05D005349 ORTHO05D006901 3.9e-66 255.0 143 82.5
arahy.Tifrunner.gnm1.ann1.2I3SKZ Arachis hypogaea HOM05D005349 ORTHO05D006901 5.1e-66 254.6 143 82.5
BcaB05g22458 Brassica carinata HOM05D005349 ORTHO05D006901 5.1e-66 254.6 162 72.2
arahy.Tifrunner.gnm1.ann1.TC15WI Arachis hypogaea HOM05D005349 ORTHO05D006901 6.7e-66 254.2 143 82.5
Ciclev10029468m.g Citrus clementina HOM05D005349 ORTHO05D006901 6.7e-66 254.2 163 74.2
MSTRG.12084 Avicennia marina HOM05D005349 ORTHO05D006901 8.8e-66 253.8 146 79.5
A03p11980 Brassica napus HOM05D005349 ORTHO05D006901 1.5e-65 253.1 152 75.0
C03p14070 Brassica napus HOM05D005349 ORTHO05D006901 1.5e-65 253.1 152 75.0
Ah.13g068160 Amaranthus hybridus HOM05D005349 ORTHO05D006901 2.0e-65 252.7 144 81.2
TAR633G1541 Trochodendron aralioides HOM05D005349 ORTHO05D006901 2.0e-65 252.7 152 76.3
unitig_0.g448 Utricularia gibba HOM05D005349 ORTHO05D006901 3.3e-65 251.9 153 77.8
Ah.13g068140 Amaranthus hybridus HOM05D005349 ORTHO05D006901 4.3e-65 251.5 139 82.7
A02p07450 Brassica napus HOM05D005349 ORTHO05D006901 5.7e-65 251.1 152 74.3
C02p13010 Brassica napus HOM05D005349 ORTHO05D006901 1.7e-64 249.6 152 75.0
MBI06_g38157_MAGBIO Magnolia biondii HOM05D005349 ORTHO05D006901 1.1e-63 246.9 148 77.0
Ca_05579_v3 Cicer arietinum L. HOM05D005349 ORTHO05D006901 3.1e-63 245.4 144 79.2
SalBow2G1455 Salvia bowleyana HOM05D005349 ORTHO05D006901 3.1e-63 245.4 163 71.8
TAR369G0142 Trochodendron aralioides HOM05D005349 ORTHO05D006901 3.1e-63 245.4 141 78.7
Nn7g36392 Nelumbo nucifera HOM05D005349 ORTHO05D006901 4.1e-63 245.0 142 79.6
LjContig00155g0000909 Lotus japonicus HOM05D005349 ORTHO05D006901 6.9e-63 244.2 143 77.6
Glyma.14G191200 Glycine max HOM05D005349 ORTHO05D006901 9.1e-63 243.8 163 71.2
PSO017G5320 Papaver somniferum HOM05D005349 ORTHO05D006901 1.5e-62 243.0 144 77.8
PSO675G4048 Papaver somniferum HOM05D005349 ORTHO05D006901 1.5e-62 243.0 144 77.8
VMungo0647G2322 Vigna mungo HOM05D005349 ORTHO05D006901 1.5e-62 243.0 163 71.2
Psat2g059680 Pisum sativum HOM05D005349 ORTHO05D006901 2.6e-62 242.3 144 76.4
SGA_v2.0_scaffold120G32925 Striga asiatica HOM05D005349 ORTHO05D006901 7.7e-62 240.7 157 69.4
Medtr5g069660 Medicago truncatula HOM05D005349 ORTHO05D006901 1.3e-61 240.0 143 76.2
TAR369G0502 Trochodendron aralioides HOM05D005349 ORTHO05D006901 1.7e-61 239.6 137 78.8
TWI31G0683 Tripterygium wilfordii HOM05D005349 ORTHO05D006901 6.5e-61 237.7 164 68.9
Phvul.008G263400 Phaseolus vulgaris HOM05D005349 ORTHO05D006901 1.9e-60 236.1 163 69.3
CANSAT54G2462 Cannabis sativa HOM05D005349 ORTHO05D006901 7.2e-60 234.2 163 66.9
HanXRQChr08g0237161 Helianthus annuus HOM05D005349 ORTHO05D006901 1.6e-59 233.0 149 72.5
Aqoxy3G03834 Aquilegia oxysepala HOM05D005349 ORTHO05D006901 6.1e-59 231.1 149 71.1
Lsat_1_v5_gn_9_25761 Lactuca sativa HOM05D005349 ORTHO05D006901 2.3e-58 229.2 163 66.3
TPR.G24015 Trifolium pratense HOM05D005349 ORTHO05D006901 3.0e-58 228.8 142 73.2
Actinidia23901 Actinidia chinensis HOM05D005349 ORTHO05D006901 6.7e-58 227.6 163 66.3
Ah.06g188660 Amaranthus hybridus HOM05D005349 ORTHO05D006901 6.7e-58 227.6 124 85.5
ECA236G3830 Erigeron canadensis HOM05D005329 ORTHO05D006858 8.8e-58 227.3 143 73.4
RcHm_v2.0_Chr5g0068491 Rosa chinensis HOM05D005349 ORTHO05D006901 3.3e-57 225.3 153 74.5
Zm00001eb031680 Zea mays HOM05D005349 ORTHO05D006901 4.4e-57 224.9 136 74.3
HanXRQChr02g0036251 Helianthus annuus HOM05D005349 ORTHO05D006901 7.4e-57 224.2 160 66.9
Aqoxy5G03549 Aquilegia oxysepala HOM05D005349 ORTHO05D006901 2.8e-56 222.2 139 73.4
ATR0618G061 Amborella trichopoda HOM05D005349 ORTHO05D006901 3.7e-56 221.9 144 70.1
GSVIVG01024797001 Vitis vinifera HOM05D005349 ORTHO05D006901 1.1e-55 220.3 160 68.1
CDE05G1614 Ceratophyllum demersum HOM05D005349 ORTHO05D006901 7.7e-54 214.2 158 60.1
BcaB01g04630 Brassica carinata HOM05D005349 ORTHO05D006901 7.2e-52 207.6 163 62.6
COL.COLO4_19096 Corchorus olitorius HOM05D005349 ORTHO05D006901 1.2e-51 206.8 115 84.3
Lalb_Chr15g0082641 Lupinus albus HOM05D005349 ORTHO05D006901 3.1e-47 192.2 163 54.6
Lalb_Chr15g0082661 Lupinus albus HOM05D005349 ORTHO05D006901 4.5e-46 188.3 163 53.4
SEGI_38965 Sequoiadendron giganteum HOM05D005349 ORTHO05D006901 8.5e-45 184.1 123 69.9
SEGI_26492 Sequoiadendron giganteum HOM05D005349 ORTHO05D006901 2.1e-43 179.5 129 65.9
Lj6g0020380 Lotus japonicus HOM05D005349 ORTHO05D006901 8.0e-43 177.6 160 58.1
Mapoly0132s0009 Marchantia polymorpha HOM05D005349 ORTHO05D006901 5.7e-41 171.4 123 64.2
Ca_14903_v3 Cicer arietinum L. HOM05D005349 ORTHO05D006901 1.4e-39 166.8 147 55.8
ECA247G0916 Erigeron canadensis HOM05D000773 ORTHO05D006901 2.7e-38 162.5 103 72.8
Psat5g161800 Pisum sativum HOM05D005349 ORTHO05D006901 5.0e-37 158.3 161 50.3
arahy.Tifrunner.gnm1.ann1.B244J5 Arachis hypogaea HOM05D005349 ORTHO05D006901 4.2e-36 155.2 173 52.0
arahy.Tifrunner.gnm1.ann1.NW0IJW Arachis hypogaea HOM05D005349 ORTHO05D006901 7.2e-36 154.5 173 52.0
Pp3c5_10690 Physcomitrium patens HOM05D005349 ORTHO05D006901 1.2e-35 153.7 126 57.9
Medtr3g462700 Medicago truncatula HOM05D005349 ORTHO05D006901 1.6e-35 153.3 161 47.8
Glyma.18G064800 Glycine max HOM05D005349 ORTHO05D006901 1.4e-34 150.2 160 48.1
Phvul.006G066000 Phaseolus vulgaris HOM05D005349 ORTHO05D006901 2.8e-32 142.5 161 46.0
Os01g0362000 Oryza sativa ssp. japonica HOM05D005349 ORTHO05D006901 3.7e-32 142.1 90 73.3
TPR.G13285 Trifolium pratense HOM05D005349 ORTHO05D006901 3.1e-31 139.0 162 44.4
CSS0044332 Camellia sinensis var. sinensis HOM05D005349 ORTHO05D006901 4.5e-30 135.2 138 55.1
BcaC04g19863 Brassica carinata HOM05D005349 ORTHO05D023983 4.4e-25 118.6 140 43.6
Nitab4.5_0000564g0380 Nicotiana tabacum HOM05D005349 ORTHO05D006901 3.7e-24 115.5 67 85.1
A10p15360 Brassica napus HOM05D005349 ORTHO05D006901 4.1e-15 85.5 63 60.3
BcaB01g04628 Brassica carinata HOM05D005349 ORTHO05D023983 1.0e-13 80.9 53 67.9
BolC9t57969H Brassica oleracea HOM05D005349 ORTHO05D023983 1.5e-12 77.0 122 35.2
HanXRQChr08g0237061 Helianthus annuus HOM05D005349 ORTHO05D006901 9.5e-12 74.3 62 59.7
C09p51090 Brassica napus HOM05D005349 ORTHO05D023983 1.4e-10 70.5 49 63.3
SEGI_40143 Sequoiadendron giganteum HOM05D005349 ORTHO05D006901 3.1e-10 69.3 58 56.9
TAR623G0970 Trochodendron aralioides HOM05D005349 ORTHO05D415159 2.2e-08 63.2 43 67.4
BraA10t43697Z Brassica rapa HOM05D005349 ORTHO05D023983 6.4e-08 61.6 46 58.7


User provided reference genes

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