Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN11G0338 Fragaria x ananassa HOM05D004683 ORTHO05D035386 3.3e-150 535.0 276 100.0
FvH4_3g16370 Fragaria vesca HOM05D037407 ORTHO05D035386 3.2e-60 236.1 219 64.4
FvH4_3g38640 Fragaria vesca HOM05D037407 ORTHO05D035386 6.2e-56 221.9 208 64.4
FvH4_3g00551 Fragaria vesca HOM05D004683 ORTHO05D005388 1.7e-29 134.0 136 61.0
RcHm_v2.0_Chr5g0000761 Rosa chinensis HOM05D004683 ORTHO05D005388 9.7e-25 118.2 140 57.1
FAN25G2373 Fragaria x ananassa HOM05D004683 ORTHO05D005388 1.0e-21 108.2 136 55.1
MD10G1336700 Malus domestica HOM05D004683 ORTHO05D005388 7.5e-17 92.0 138 52.2
ClCG01G010700 Citrullus lanatus HOM05D004683 ORTHO05D005388 2.8e-16 90.1 152 46.7
CsaV3_1G015800 Cucumis sativus L. HOM05D004683 ORTHO05D005388 8.3e-16 88.6 160 43.1
CsaV3_UNG061480 Cucumis sativus L. HOM05D004683 ORTHO05D005388 8.3e-16 88.6 160 43.1
Sed0018998 Sechium edule HOM05D004683 ORTHO05D005388 4.1e-15 86.3 152 45.4
MELO3C025532.2 Cucumis melo HOM05D004683 ORTHO05D005388 7.0e-15 85.5 153 43.8
FAN09G2739 Fragaria x ananassa HOM05D002378 ORTHO05D002936 1.2e-14 84.7 58 82.8
FvH4_6g45430 Fragaria vesca HOM05D002378 ORTHO05D002936 2.0e-14 84.0 58 82.8
FAN14G4540 Fragaria x ananassa HOM05D002378 ORTHO05D002936 2.0e-14 84.0 58 82.8
Cfa000066 Carpinus fangiana HOM05D004683 ORTHO05D005388 2.7e-14 83.6 154 44.8
CSS0001859 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 3.5e-14 83.2 91 56.0
CSS0016540 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 3.5e-14 83.2 91 56.0
CSS0027604 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 3.5e-14 83.2 91 56.0
Prupe.4G006700 Prunus persica HOM05D004683 ORTHO05D005388 3.5e-14 83.2 138 48.6
MD00G1058000 Malus domestica HOM05D004683 ORTHO05D005388 4.5e-14 82.8 138 50.0
AUR62021828 Chenopodium quinoa HOM05D004683 ORTHO05D005388 7.7e-14 82.0 148 43.2
TWI38G0781 Tripterygium wilfordii HOM05D004683 ORTHO05D005388 7.7e-14 82.0 81 58.0
Dinv04407 Davidia involucrata HOM05D004683 ORTHO05D005388 1.7e-13 80.9 89 53.9
Thecc.06G237400 Theobroma cacao HOM05D004683 ORTHO05D005388 2.2e-13 80.5 88 55.7
CSS0022133 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 2.9e-13 80.1 95 52.6
Hma1.2p1_0657F.1_g196900 Hydrangea macrophylla HOM05D004683 ORTHO05D005388 2.9e-13 80.1 159 40.3
CANSAT56G4109 Cannabis sativa HOM05D004683 ORTHO05D005388 5.0e-13 79.3 159 40.9
AUR62012829 Chenopodium quinoa HOM05D004683 ORTHO05D005388 5.0e-13 79.3 77 59.7
Lj2A259T33 Lonicera japonica HOM05D004683 ORTHO05D005388 5.0e-13 79.3 81 54.3
TAR626G1909 Trochodendron aralioides HOM05D004683 ORTHO05D005388 6.5e-13 79.0 80 61.2
Aqoxy4G02236 Aquilegia oxysepala HOM05D004683 ORTHO05D005388 1.1e-12 78.2 88 52.3
TWI63G0041 Tripterygium wilfordii HOM05D004683 ORTHO05D005388 1.1e-12 78.2 167 40.1
FAN05G2971 Fragaria x ananassa HOM05D002378 ORTHO05D002936 1.5e-12 77.8 57 77.2
CiPaw.09G105900 Carya illinoinensis HOM05D004683 ORTHO05D005388 2.5e-12 77.0 157 40.1
CSS0018655 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 3.2e-12 76.6 164 41.5
Actinidia11898 Actinidia chinensis HOM05D004683 ORTHO05D005388 9.4e-12 75.1 145 44.8
Actinidia39280 Actinidia chinensis HOM05D004683 ORTHO05D005388 1.6e-11 74.3 145 44.1
Ah.14g087460 Amaranthus hybridus HOM05D004683 ORTHO05D005388 1.6e-11 74.3 79 54.4
GSVIVG01007216001 Vitis vinifera HOM05D004683 ORTHO05D005388 2.1e-11 73.9 88 50.0
Duzib160G0680 Durio zibethinus HOM05D004683 ORTHO05D005388 2.7e-11 73.6 154 39.0
CSS0042800 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 3.6e-11 73.2 164 40.2
EL10Ac8g20240 Beta vulgaris HOM05D004683 ORTHO05D005388 4.7e-11 72.8 81 51.9
COL.COLO4_15259 Corchorus olitorius HOM05D004683 ORTHO05D005388 4.7e-11 72.8 91 51.6
Nitab4.5_0004646g0030 Nicotiana tabacum HOM05D004683 ORTHO05D005388 4.7e-11 72.8 165 38.2
Solyc11g012610.2 Solanum lycopersicum HOM05D004683 ORTHO05D005388 4.7e-11 72.8 83 54.2
Sopen00g010710 Solanum pennellii HOM05D004683 ORTHO05D005388 4.7e-11 72.8 83 54.2
CDE06G0298 Ceratophyllum demersum HOM05D000165 ORTHO05D005388 6.1e-11 72.4 79 54.4
Phvul.006G141000 Phaseolus vulgaris HOM05D004683 ORTHO05D005388 6.1e-11 72.4 164 36.0
Sabra16G0012500 Salix brachista HOM05D004683 ORTHO05D005388 8.0e-11 72.0 151 42.4
PGSC0003DMG400013358 Solanum tuberosum HOM05D004683 ORTHO05D005388 1.0e-10 71.6 83 53.0
Cpa.g.sc27.252 Carica papaya HOM05D004683 ORTHO05D005388 1.4e-10 71.2 163 39.9
Nitab4.5_0001109g0120 Nicotiana tabacum HOM05D004683 ORTHO05D005388 1.4e-10 71.2 168 37.5
Ah.09g234040 Amaranthus hybridus HOM05D004683 ORTHO05D005388 1.8e-10 70.9 81 54.3
Gohir.D10G008100 Gossypium hirsutum HOM05D004683 ORTHO05D005388 1.8e-10 70.9 154 36.4
QL05p068304 Quercus lobata HOM05D004683 ORTHO05D005388 1.8e-10 70.9 82 51.2
TAR341G0001 Trochodendron aralioides HOM05D004683 ORTHO05D005388 2.3e-10 70.5 84 51.2
TAR485G0001 Trochodendron aralioides HOM05D004683 ORTHO05D005388 2.3e-10 70.5 84 51.2
arahy.Tifrunner.gnm1.ann1.5M71YA Arachis hypogaea HOM05D004683 ORTHO05D005388 3.0e-10 70.1 137 41.6
Potri.016G008400 Populus trichocarpa HOM05D004683 ORTHO05D005388 3.0e-10 70.1 151 40.4
arahy.Tifrunner.gnm1.ann1.L4TARN Arachis hypogaea HOM05D004683 ORTHO05D005388 4.0e-10 69.7 137 41.6
FvH4_6g17761 Fragaria vesca HOM05D037407 ORTHO05D197226 4.0e-10 69.7 53 75.5
Gorai.011G008800 Gossypium raimondii HOM05D004683 ORTHO05D005388 4.0e-10 69.7 154 36.4
Nitab4.5_0001668g0040 Nicotiana tabacum HOM05D004683 ORTHO05D005388 4.0e-10 69.7 164 36.0
Psat1g173720 Pisum sativum HOM05D004683 ORTHO05D005388 4.0e-10 69.7 149 38.9
THA.LOC104806735 Tarenaya hassleriana HOM05D004683 ORTHO05D005388 4.0e-10 69.7 145 43.4
Lalb_Chr15g0088101 Lupinus albus HOM05D004683 ORTHO05D005388 5.2e-10 69.3 84 53.6
Peaxi162Scf00352g01036 Petunia axillaris HOM05D004683 ORTHO05D005388 5.2e-10 69.3 78 53.8
Sabra06G0012200 Salix brachista HOM05D004683 ORTHO05D005388 5.2e-10 69.3 84 53.6
Duzib235G0361 Durio zibethinus HOM05D004683 ORTHO05D005388 6.8e-10 68.9 147 38.1
FAN02G3097 Fragaria x ananassa HOM05D002378 ORTHO05D002936 6.8e-10 68.9 57 70.2
Potri.006G017200 Populus trichocarpa HOM05D004683 ORTHO05D005388 1.2e-09 68.2 151 40.4
RcHm_v2.0_Chr2g0163261 Rosa chinensis HOM05D002378 ORTHO05D002936 1.5e-09 67.8 59 69.5
SalBow8G0627 Salvia bowleyana HOM05D004683 ORTHO05D005388 1.5e-09 67.8 140 40.0
Sc05g0009730 Simmondsia chinensis HOM05D004683 ORTHO05D005388 2.0e-09 67.4 76 52.6
Lsat_1_v5_gn_0_24381 Lactuca sativa HOM05D004683 ORTHO05D005388 2.6e-09 67.0 92 46.7
Manes.09G081701 Manihot esculenta HOM05D004683 ORTHO05D005388 2.6e-09 67.0 151 41.7
Nn1g07478 Nelumbo nucifera HOM05D004683 ORTHO05D005388 2.6e-09 67.0 80 51.2
Peaxi162Scf01544g00025 Petunia axillaris HOM05D004683 ORTHO05D005388 2.6e-09 67.0 92 44.6
QL05p068796 Quercus lobata HOM05D004683 ORTHO05D005388 2.6e-09 67.0 130 38.5
Oeu052866.1 Olea europaea HOM05D004683 ORTHO05D005388 3.4e-09 66.6 86 47.7
Hund21139 Selenicereus undatus HOM05D004683 ORTHO05D005388 3.4e-09 66.6 76 51.3
TPR.G10575 Trifolium pratense HOM05D004683 ORTHO05D005388 3.4e-09 66.6 154 39.6
BcaC09g50454 Brassica carinata HOM05D004683 ORTHO05D005388 4.4e-09 66.2 137 43.1
C01p25270 Brassica napus HOM05D004683 ORTHO05D005388 4.4e-09 66.2 137 43.1
BcaNung00108 Brassica carinata HOM05D004683 ORTHO05D005388 5.7e-09 65.9 132 43.9
BolC1t02477H Brassica oleracea HOM05D004683 ORTHO05D005388 7.5e-09 65.5 132 43.2
PGSC0003DMG400023555 Solanum tuberosum HOM05D004683 ORTHO05D005388 7.5e-09 65.5 142 36.6
Medtr2g026550 Medicago truncatula HOM05D004683 ORTHO05D005388 9.8e-09 65.1 155 39.4
Oeu052851.1 Olea europaea HOM05D004683 ORTHO05D005388 1.3e-08 64.7 72 52.8
Sopen04g006980 Solanum pennellii HOM05D004683 ORTHO05D005388 1.3e-08 64.7 143 37.8
Gohir.A10G008300 Gossypium hirsutum HOM05D004683 ORTHO05D005388 1.7e-08 64.3 154 34.4
Solyc04g014850.3 Solanum lycopersicum HOM05D004683 ORTHO05D005388 1.7e-08 64.3 143 37.8
A01p20140 Brassica napus HOM05D004683 ORTHO05D005388 2.2e-08 63.9 130 42.3
BraA01t01938Z Brassica rapa HOM05D004683 ORTHO05D005388 2.2e-08 63.9 130 42.3
CDE04G2289 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 2.2e-08 63.9 76 51.3
Lj6g0001835 Lotus japonicus HOM05D004683 ORTHO05D005388 2.8e-08 63.5 150 38.0
Sp7g16950 Schrenkiella parvula HOM05D004683 ORTHO05D005388 2.8e-08 63.5 137 40.1
vmacro15736 Vaccinium macrocarpon HOM05D004683 ORTHO05D005388 2.8e-08 63.5 79 50.6
AL7G37470 Arabidopsis lyrata HOM05D004683 ORTHO05D005388 3.7e-08 63.2 139 41.7
Oeu030103.1 Olea europaea HOM05D004683 ORTHO05D005388 3.7e-08 63.2 133 37.6
PSO675G6369 Papaver somniferum HOM05D004683 ORTHO05D005388 3.7e-08 63.2 76 53.9
Cc09_g00590 Coffea canephora HOM05D004683 ORTHO05D005388 4.8e-08 62.8 75 49.3
PSO541G4951 Papaver somniferum HOM05D004683 ORTHO05D005388 4.8e-08 62.8 75 54.7
Sabra16G0012800 Salix brachista HOM05D004683 ORTHO05D005388 4.8e-08 62.8 152 40.1
COL.COLO4_30227 Corchorus olitorius HOM05D001156 ORTHO05D001006 6.3e-08 62.4 91 48.4
Lsat_1_v5_gn_7_14120 Lactuca sativa HOM05D004683 ORTHO05D005388 8.3e-08 62.0 93 44.1
Atru.chr1.2335 Acer truncatum HOM05D004683 ORTHO05D005388 1.1e-07 61.6 159 35.8
ATR0624G003 Amborella trichopoda HOM05D004683 ORTHO05D005388 1.4e-07 61.2 135 37.8
AT4G17240 Arabidopsis thaliana HOM05D004683 ORTHO05D005388 1.4e-07 61.2 139 40.3
Thhalv10025641m.g Eutrema salsugineum HOM05D004683 ORTHO05D005388 1.4e-07 61.2 150 36.7
MBI19_g44082_MAGBIO Magnolia biondii HOM05D004683 ORTHO05D005388 1.4e-07 61.2 161 36.0
Gorai.010G188900 Gossypium raimondii HOM05D004683 ORTHO05D005388 1.8e-07 60.8 157 37.6
PGR004G0928 Punica granatum HOM05D004683 ORTHO05D005388 1.8e-07 60.8 151 40.4
Aa31LG6G60 Aethionema arabicum HOM05D004683 ORTHO05D005388 2.4e-07 60.5 161 36.6
Ciclev10017876m.g Citrus clementina HOM05D004683 ORTHO05D005388 3.1e-07 60.1 153 39.9
Gohir.D06G161900 Gossypium hirsutum HOM05D004683 ORTHO05D005388 3.1e-07 60.1 157 36.9
Rhsim02G0091200 Rhododendron simsii HOM05D004683 ORTHO05D005388 3.1e-07 60.1 171 38.0
Carub.0007s2417 Capsella rubella HOM05D004683 ORTHO05D005388 7.0e-07 58.9 134 38.8
CAN.G696.10 Capsicum annuum HOM05D004683 ORTHO05D005388 7.0e-07 58.9 169 36.1
CARHR223850 Cardamine hirsuta HOM05D004683 ORTHO05D005388 7.0e-07 58.9 142 40.8
Gohir.A06G155500 Gossypium hirsutum HOM05D004683 ORTHO05D005388 7.0e-07 58.9 157 36.9
Os03g0750900 Oryza sativa ssp. japonica HOM05D004683 ORTHO05D005388 9.1e-07 58.5 71 50.7
Migut.M01430 Erythranthe guttata HOM05D004683 ORTHO05D005388 1.2e-06 58.2 139 37.4
Eucgr.D01443 Eucalyptus grandis HOM05D004683 ORTHO05D005388 1.6e-06 57.8 82 51.2
HanXRQChr15g0470281 Helianthus annuus HOM05D004683 ORTHO05D005388 2.0e-06 57.4 74 48.6
HPP92_014031 Vanilla planifolia HOM05D004683 ORTHO05D005388 2.7e-06 57.0 91 39.6
MSTRG.7144 Avicennia marina HOM05D004683 ORTHO05D005388 5.9e-06 55.8 134 35.8


User provided reference genes

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