Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN11G0281 Fragaria x ananassa HOM05D005193 ORTHO05D006316 0.0e+00 1840.1 939 100.0
FAN21G2135 Fragaria x ananassa HOM05D005193 ORTHO05D006316 0.0e+00 1673.7 939 92.9
FAN16G1885 Fragaria x ananassa HOM05D005193 ORTHO05D006316 0.0e+00 1641.7 901 94.0
FAN25G0346 Fragaria x ananassa HOM05D005193 ORTHO05D006316 0.0e+00 1569.7 1021 83.0
RcHm_v2.0_Chr5g0040821 Rosa chinensis HOM05D005193 ORTHO05D006316 0.0e+00 1566.2 939 87.3
FAN25G2894 Fragaria x ananassa HOM05D005193 ORTHO05D006316 0.0e+00 1449.1 971 81.1
FvH4_3g23170 Fragaria vesca HOM05D005193 ORTHO05D006316 0.0e+00 1428.3 755 97.6
MD03G1197400 Malus domestica HOM05D005193 ORTHO05D006316 0.0e+00 1371.3 934 76.2
Prupe.4G218100 Prunus persica HOM05D005193 ORTHO05D006316 0.0e+00 1327.8 869 77.8
QL08p009116 Quercus lobata HOM05D005193 ORTHO05D006316 0.0e+00 1234.2 924 69.2
CiPaw.11G192300 Carya illinoinensis HOM05D005193 ORTHO05D006316 0.0e+00 1140.6 931 64.2
TAR627G0707 Trochodendron aralioides HOM05D005193 ORTHO05D006316 0.0e+00 1111.7 892 65.0
Ciclev10007388m.g Citrus clementina HOM05D005193 ORTHO05D006316 0.0e+00 1104.0 931 61.8
Thecc.07G032100 Theobroma cacao HOM05D005193 ORTHO05D006316 0.0e+00 1092.0 928 62.7
Dinv40781 Davidia involucrata HOM05D005193 ORTHO05D006316 0.0e+00 1088.9 895 64.6
CANSAT11G2467 Cannabis sativa HOM05D005193 ORTHO05D006316 6.4e-312 1074.7 924 60.8
Atru.chr2.3490 Acer truncatum HOM05D005193 ORTHO05D006316 5.8e-311 1070.8 898 62.7
Potri.001G356700 Populus trichocarpa HOM05D005193 ORTHO05D006316 7.7e-311 1070.5 934 60.1
Gohir.D01G069100 Gossypium hirsutum HOM05D005193 ORTHO05D006316 5.4e-309 1064.3 945 59.2
Actinidia10743 Actinidia chinensis HOM05D005193 ORTHO05D006316 1.6e-308 1062.8 931 60.5
TWI38G1184 Tripterygium wilfordii HOM05D005193 ORTHO05D006316 5.0e-307 1057.7 932 58.7
Duzib268G1225 Durio zibethinus HOM05D005193 ORTHO05D006316 2.5e-306 1055.4 944 59.2
Gohir.A01G082500 Gossypium hirsutum HOM05D005193 ORTHO05D006316 2.5e-306 1055.4 945 58.9
Glyma.14G021300 Glycine max HOM05D005193 ORTHO05D006316 7.3e-306 1053.9 932 59.0
VMungo0647G2043 Vigna mungo HOM05D005193 ORTHO05D006316 7.3e-306 1053.9 934 58.9
Hma1.2p1_0036F.1_g023390 Hydrangea macrophylla HOM05D005193 ORTHO05D006316 1.4e-304 1049.7 905 59.9
Sabra16G0234700 Salix brachista HOM05D005193 ORTHO05D006316 1.8e-304 1049.3 953 57.5
arahy.Tifrunner.gnm1.ann1.K04HM7 Arachis hypogaea HOM05D005193 ORTHO05D006316 5.8e-303 1044.3 924 58.7
Gorai.002G091400 Gossypium raimondii HOM05D005193 ORTHO05D006316 1.3e-302 1043.1 930 59.1
Nn1g03454 Nelumbo nucifera HOM05D005193 ORTHO05D006316 8.3e-302 1040.4 931 59.6
Haze_09711 Corylus avellana HOM05D005193 ORTHO05D006316 3.5e-300 1035.0 906 60.6
RhsimUnG0248800 Rhododendron simsii HOM05D005193 ORTHO05D006316 4.6e-300 1034.6 986 56.2
LjContig00272g0004657 Lotus japonicus HOM05D005193 ORTHO05D006316 1.0e-299 1033.5 940 58.0
Ca_11685_v3 Cicer arietinum L. HOM05D005193 ORTHO05D006316 3.3e-298 1028.5 928 58.2
Phvul.008G270200 Phaseolus vulgaris HOM05D005193 ORTHO05D006316 1.1e-296 1023.5 925 58.2
COL.COLO4_09693 Corchorus olitorius HOM05D005193 ORTHO05D006316 3.4e-295 1018.5 977 58.0
Medtr1g056460 Medicago truncatula HOM05D005193 ORTHO05D006316 9.8e-295 1016.9 928 58.5
arahy.Tifrunner.gnm1.ann1.J5TE7C Arachis hypogaea HOM05D005193 ORTHO05D006316 7.8e-292 1007.3 924 57.4
Psat6g078440 Pisum sativum HOM05D005193 ORTHO05D006316 8.6e-291 1003.8 926 57.2
MELO3C013149.2 Cucumis melo HOM05D005193 ORTHO05D006316 2.7e-284 982.2 924 56.6
CsaV3_7G021980 Cucumis sativus L. HOM05D005193 ORTHO05D006316 2.0e-279 966.1 924 55.1
GSVIVG01037690001 Vitis vinifera HOM05D005193 ORTHO05D006316 1.9e-277 959.5 734 66.8
TPR.G2822 Trifolium pratense HOM05D005193 ORTHO05D006316 4.6e-276 954.9 933 55.1
MBI07_g09089_MAGBIO Magnolia biondii HOM05D005193 ORTHO05D006316 8.7e-275 950.7 938 55.0
Manes.15G068700 Manihot esculenta HOM05D005193 ORTHO05D006316 5.6e-274 948.0 800 61.4
PGR031G1204 Punica granatum HOM05D005193 ORTHO05D006316 4.6e-268 928.3 925 54.3
Aqoxy4G01697 Aquilegia oxysepala HOM05D005193 ORTHO05D006316 1.7e-267 926.4 938 53.3
Aqoxy1G03394 Aquilegia oxysepala HOM05D005193 ORTHO05D006316 3.0e-267 925.6 946 53.5
Sed0015549 Sechium edule HOM05D005193 ORTHO05D006316 4.8e-265 918.3 924 54.2
PSO210G7537 Papaver somniferum HOM05D005193 ORTHO05D006316 8.1e-265 917.5 928 53.4
PSO832G1529 Papaver somniferum HOM05D005193 ORTHO05D006316 1.5e-263 913.3 926 52.7
Lsat_1_v5_gn_7_111080 Lactuca sativa HOM05D005193 ORTHO05D006316 7.1e-261 904.4 930 51.9
MSTRG.6941 Avicennia marina HOM05D005193 ORTHO05D006316 5.8e-255 884.8 932 51.1
THA.LOC104816145 Tarenaya hassleriana HOM05D005193 ORTHO05D006316 1.7e-254 883.2 936 50.0
ECA236G2682 Erigeron canadensis HOM05D005193 ORTHO05D006316 6.4e-254 881.3 928 49.6
Sopen12g001090 Solanum pennellii HOM05D005193 ORTHO05D006316 1.9e-253 879.8 929 51.3
Cc05_g14020 Coffea canephora HOM05D005193 ORTHO05D006316 9.3e-253 877.5 921 50.9
HanXRQChr11g0335911 Helianthus annuus HOM05D005193 ORTHO05D006316 1.3e-251 873.6 884 51.8
AT1G50730 Arabidopsis thaliana HOM05D005193 ORTHO05D006316 1.8e-251 873.2 923 50.6
Sp1g37570 Schrenkiella parvula HOM05D005193 ORTHO05D006316 2.8e-249 865.9 924 51.0
Carub.0001s3976 Capsella rubella HOM05D005193 ORTHO05D006316 8.2e-249 864.4 924 49.9
Migut.M01736 Erythranthe guttata HOM05D005193 ORTHO05D006316 3.8e-246 855.5 918 50.0
BraA06t23495Z Brassica rapa HOM05D005193 ORTHO05D006316 2.3e-243 846.3 925 49.6
Eucgr.F03483 Eucalyptus grandis HOM05D005193 ORTHO05D006316 4.5e-239 832.0 811 56.1
BcaC08g43253 Brassica carinata HOM05D005193 ORTHO05D006316 2.5e-237 826.2 921 49.0
Ah.06g182590 Amaranthus hybridus HOM05D005193 ORTHO05D006316 9.4e-237 824.3 938 48.4
BcaB07g33512 Brassica carinata HOM05D005193 ORTHO05D006316 1.0e-235 820.8 914 49.7
C06p05990 Brassica napus HOM05D005193 ORTHO05D006316 3.9e-235 818.9 926 49.0
A06p02890 Brassica napus HOM05D005193 ORTHO05D006316 9.7e-234 814.3 922 48.4
Oeu041839.1 Olea europaea HOM05D005193 ORTHO05D006316 4.8e-233 812.0 756 55.0
CARHR040830 Cardamine hirsuta HOM05D005193 ORTHO05D006316 8.5e-230 801.2 861 50.9
Thhalv10011218m.g Eutrema salsugineum HOM05D005193 ORTHO05D006316 3.2e-229 799.3 948 48.2
Aa31LG10G3620 Aethionema arabicum HOM05D005193 ORTHO05D006316 4.4e-226 788.9 925 47.5
BolC6t35712H Brassica oleracea HOM05D005193 ORTHO05D006316 5.7e-218 761.9 956 46.2
AUR62020399 Chenopodium quinoa HOM05D005193 ORTHO05D006316 2.6e-215 753.1 855 49.6
ClCG09G010950 Citrullus lanatus HOM05D005193 ORTHO05D006316 1.1e-213 747.7 977 46.2
AUR62015820 Chenopodium quinoa HOM05D005193 ORTHO05D006316 1.7e-209 733.8 921 46.7
Cpa.g.sc12.274 Carica papaya HOM05D005193 ORTHO05D006316 8.3e-201 704.9 668 57.2
Peaxi162Scf00660g00118 Petunia axillaris HOM05D005193 ORTHO05D006316 8.9e-187 658.3 705 51.2
HPP92_008858 Vanilla planifolia HOM05D005193 ORTHO05D006316 2.7e-183 646.7 887 42.6
Hund02018 Selenicereus undatus HOM05D005193 ORTHO05D006316 7.3e-181 638.6 979 39.0
vmacro09699 Vaccinium macrocarpon HOM05D005193 ORTHO05D006316 1.7e-166 590.9 518 58.5
Lalb_Chr17g0348621 Lupinus albus HOM05D005193 ORTHO05D006316 9.9e-162 575.1 529 57.5
Mapoly0038s0063 Marchantia polymorpha HOM05D005193 ORTHO05D006316 9.0e-155 552.0 907 36.8
Pp3c16_8580 Physcomitrium patens HOM05D005193 ORTHO05D006316 1.5e-149 534.6 876 36.4
SMO115G0237 Selaginella moellendorffii HOM05D005193 ORTHO05D006316 5.8e-146 522.7 925 36.2
Nitab4.5_0000168g0220 Nicotiana tabacum HOM05D005193 ORTHO05D006316 3.3e-141 506.9 525 52.0
arahy.Tifrunner.gnm1.ann1.6PV7EE Arachis hypogaea HOM05D005193 ORTHO05D006316 2.7e-135 487.3 448 57.8
CBR_g49709 Chara braunii HOM05D005193 ORTHO05D000048 3.3e-125 453.8 877 34.8
CSS0020168 Camellia sinensis var. sinensis HOM05D005193 ORTHO05D006316 4.8e-124 449.9 494 51.0
Lj1C877G15 Lonicera japonica HOM05D005193 ORTHO05D006316 5.7e-117 426.4 417 54.0
Nitab4.5_0003450g0040 Nicotiana tabacum HOM05D005193 ORTHO05D006316 1.4e-112 411.8 490 47.3
Lalb_Chr17g0348631 Lupinus albus HOM05D005193 ORTHO05D006316 5.3e-107 393.3 381 55.1
AagrBONN_evm.TU.Sc2ySwM_344.2169 Anthoceros agrestis HOM05D005193 ORTHO05D006316 3.2e-104 384.0 664 36.9
ATR0585G046 Amborella trichopoda HOM05D005193 ORTHO05D006316 4.1e-99 367.1 416 46.2
arahy.Tifrunner.gnm1.ann1.89LBMG Arachis hypogaea HOM05D005193 ORTHO05D006316 5.0e-97 360.1 333 56.8
CDE02G4624 Ceratophyllum demersum HOM05D005193 ORTHO05D006316 5.9e-82 310.1 396 46.7
Nitab4.5_0003450g0030 Nicotiana tabacum HOM05D005193 ORTHO05D006316 3.8e-81 307.4 406 43.6
Lj1C877G9 Lonicera japonica HOM05D005193 ORTHO05D006316 8.3e-76 289.7 284 54.9
SalBow8G4471 Salvia bowleyana HOM05D005193 ORTHO05D006316 6.6e-65 253.4 477 34.6
CDE02G0254 Ceratophyllum demersum HOM05D005193 ORTHO05D006316 1.6e-55 222.2 286 43.0
AUR62015822 Chenopodium quinoa HOM05D005193 ORTHO05D006316 1.5e-53 215.7 551 29.8
arahy.Tifrunner.gnm1.ann1.DP08C5 Arachis hypogaea HOM05D005193 ORTHO05D006316 2.2e-52 211.8 278 46.4
arahy.Tifrunner.gnm1.ann1.SW2PFC Arachis hypogaea HOM05D005193 ORTHO05D006316 2.2e-52 211.8 278 46.4
Nitab4.5_0000168g0230 Nicotiana tabacum HOM05D005193 ORTHO05D006316 6.0e-50 203.8 209 48.8
Solyc12g005090.3 Solanum lycopersicum HOM05D005193 ORTHO05D006316 2.0e-45 188.7 202 47.0
CAN.G1219.3 Capsicum annuum HOM05D005193 ORTHO05D006316 4.4e-45 187.6 207 48.8
Lsat_1_v5_gn_6_67380 Lactuca sativa HOM05D005193 ORTHO05D006316 6.2e-39 167.2 215 45.1
Lsat_1_v5_gn_9_67960 Lactuca sativa HOM05D005193 ORTHO05D006316 6.2e-39 167.2 215 45.1
CDE02G0065 Ceratophyllum demersum HOM05D005193 ORTHO05D006316 2.7e-34 151.8 212 40.1
Gorai.011G223800 Gossypium raimondii HOM05D005193 ORTHO05D006316 1.1e-32 146.4 169 48.5
CDE02G4589 Ceratophyllum demersum HOM05D005193 ORTHO05D006316 5.6e-32 144.1 246 38.6
Peaxi162Scf00660g00119 Petunia axillaris HOM05D005193 ORTHO05D006316 1.3e-31 142.9 152 46.1
ATR0585G123 Amborella trichopoda HOM05D005193 ORTHO05D006316 2.8e-31 141.7 169 46.7
EL10Ac4g07765 Beta vulgaris HOM05D005193 ORTHO05D006316 3.2e-27 128.3 184 42.9
Sabra06G0024500 Salix brachista HOM05D005193 ORTHO05D006316 1.5e-24 119.4 98 61.2
Gohir.D10G199632 Gossypium hirsutum HOM05D005193 ORTHO05D006316 7.4e-24 117.1 140 46.4
MD16G1253600 Malus domestica HOM05D005193 ORTHO05D006316 9.6e-24 116.7 66 81.8
Sabra16G0098300 Salix brachista HOM05D005193 ORTHO05D006316 9.6e-24 116.7 96 61.5
Cpa.g.sc12.275 Carica papaya HOM05D005193 ORTHO05D006316 1.3e-23 116.3 95 56.8
CAN.G1219.2 Capsicum annuum HOM05D005193 ORTHO05D006316 8.1e-23 113.6 96 55.2
CSS0028155 Camellia sinensis var. sinensis HOM05D005193 ORTHO05D006316 1.1e-22 113.2 90 63.3
CSS0039097 Camellia sinensis var. sinensis HOM05D005193 ORTHO05D006316 1.1e-22 113.2 90 63.3
arahy.Tifrunner.gnm1.ann1.BLY3DW Arachis hypogaea HOM05D005193 ORTHO05D006316 5.8e-21 107.5 90 57.8
AagrBONN_evm.TU.Sc2ySwM_362.1473 Anthoceros agrestis HOM05D005193 ORTHO05D006316 3.2e-19 101.7 124 46.0
Haze_09712 Corylus avellana HOM05D005193 ORTHO05D006316 7.9e-18 97.1 114 55.3
CSS0047254 Camellia sinensis var. sinensis HOM05D005193 ORTHO05D006316 1.8e-17 95.9 192 35.4
Gorai.001G274400 Gossypium raimondii HOM05D005193 ORTHO05D006316 3.0e-17 95.1 121 44.6
Gohir.D08G017066 Gossypium hirsutum HOM05D005193 ORTHO05D006316 1.9e-16 92.4 75 61.3
GSVIVG01037691001 Vitis vinifera HOM05D005193 ORTHO05D006316 9.6e-16 90.1 114 51.8
ATR0585G071 Amborella trichopoda HOM05D005193 ORTHO05D006316 1.6e-15 89.4 144 33.3
Aqoxy4G00029 Aquilegia oxysepala HOM05D002071 ORTHO05D002109 1.6e-15 89.4 97 43.3
Cpa.g.sc12.273 Carica papaya HOM05D005193 ORTHO05D006316 8.2e-15 87.0 126 45.2
TPR.G2800 Trifolium pratense HOM05D005193 ORTHO05D006316 4.1e-14 84.7 119 43.7
Oeu041837.1 Olea europaea HOM05D005193 ORTHO05D006316 1.3e-12 79.7 91 45.1
SalBow8G0199 Salvia bowleyana HOM05D005193 ORTHO05D006316 1.7e-12 79.3 87 47.1
Eucgr.F03486 Eucalyptus grandis HOM05D005193 ORTHO05D006316 4.2e-11 74.7 114 43.9
SEGI_10601 Sequoiadendron giganteum HOM05D005193 ORTHO05D006316 1.0e-09 70.1 79 41.8
SEGI_35263 Sequoiadendron giganteum HOM05D005193 ORTHO05D006316 2.3e-09 68.9 60 51.7
SEGI_12195 Sequoiadendron giganteum HOM05D005193 ORTHO05D006316 1.6e-07 62.8 92 35.9
TPR.G2798 Trifolium pratense HOM05D005193 ORTHO05D006316 1.1e-06 60.1 60 53.3


User provided reference genes

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