Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN11G0216 Fragaria x ananassa HOM05D003575 ORTHO05D045963 2.4e-270 934.9 458 100.0
FvH4_3g20450 Fragaria vesca HOM05D039614 ORTHO05D045963 7.0e-246 853.6 524 84.2
FAN21G0497 Fragaria x ananassa HOM05D003575 ORTHO05D003587 4.4e-38 163.3 184 50.5
FAN11G1554 Fragaria x ananassa HOM05D039614 ORTHO05D045439 3.7e-37 160.2 345 32.5
RcHm_v2.0_Chr5g0034301 Rosa chinensis HOM05D003575 ORTHO05D003587 1.4e-36 158.3 182 48.4
FvH4_3g20410 Fragaria vesca HOM05D003575 ORTHO05D003587 2.0e-35 154.5 184 48.4
FAN11G3075 Fragaria x ananassa HOM05D003575 ORTHO05D003587 2.0e-35 154.5 184 48.4
FAN16G0569 Fragaria x ananassa HOM05D003575 ORTHO05D003587 1.2e-32 145.2 140 55.0
RcHm_v2.0_Chr7g0213061 Rosa chinensis HOM05D003575 ORTHO05D003587 1.2e-27 128.6 135 49.6
FAN11G2840 Fragaria x ananassa HOM05D003575 ORTHO05D003587 2.0e-27 127.9 160 42.5
FAN21G1295 Fragaria x ananassa HOM05D003575 ORTHO05D003587 5.9e-27 126.3 160 42.5
FvH4_5g23730 Fragaria vesca HOM05D003575 ORTHO05D003587 1.3e-26 125.2 197 42.1
FAN14G3058 Fragaria x ananassa HOM05D003575 ORTHO05D003587 8.6e-26 122.5 127 51.2
FAN16G3603 Fragaria x ananassa HOM05D003575 ORTHO05D003587 1.9e-25 121.3 164 41.5
FAN18G2204 Fragaria x ananassa HOM05D003575 ORTHO05D003587 4.2e-25 120.2 137 46.7
RcHm_v2.0_Chr2g0155791 Rosa chinensis HOM05D003575 ORTHO05D003587 1.2e-24 118.6 117 51.3
FAN18G1810 Fragaria x ananassa HOM05D003575 ORTHO05D003587 1.6e-24 118.2 120 50.8
FvH4_6g40530 Fragaria vesca HOM05D003575 ORTHO05D003587 4.7e-24 116.7 114 53.5
Prupe.3G196500 Prunus persica HOM05D003575 ORTHO05D003587 1.0e-23 115.5 184 37.0
FvH4_3g17720 Fragaria vesca HOM05D003575 ORTHO05D003587 6.8e-23 112.8 170 38.2
FvH4_2g12920 Fragaria vesca HOM05D003575 ORTHO05D003587 1.2e-22 112.1 95 55.8
FAN24G1566 Fragaria x ananassa HOM05D003575 ORTHO05D003587 1.2e-22 112.1 95 55.8
MD17G1118100 Malus domestica HOM05D003575 ORTHO05D003587 1.2e-22 112.1 93 55.9
FAN15G3143 Fragaria x ananassa HOM05D003575 ORTHO05D003587 2.6e-22 110.9 95 54.7
FAN20G0397 Fragaria x ananassa HOM05D003575 ORTHO05D003587 2.6e-22 110.9 95 54.7
FAN14G2021 Fragaria x ananassa HOM05D003575 ORTHO05D003587 5.7e-22 109.8 156 38.5
FvH4_6g40510 Fragaria vesca HOM05D003575 ORTHO05D003587 2.2e-21 107.8 118 47.5
FvH4_6g40520 Fragaria vesca HOM05D003575 ORTHO05D003587 2.2e-21 107.8 96 52.1
MD09G1128800 Malus domestica HOM05D003575 ORTHO05D003587 2.8e-21 107.5 80 60.0
RcHm_v2.0_Chr2g0155771 Rosa chinensis HOM05D003575 ORTHO05D003587 2.0e-19 101.3 76 63.2
Potri.002G216900 Populus trichocarpa HOM05D003575 ORTHO05D003587 1.9e-17 94.7 178 33.7
TWI18G0759 Tripterygium wilfordii HOM05D003575 ORTHO05D003587 1.9e-17 94.7 151 36.4
TWI36G1168 Tripterygium wilfordii HOM05D003575 ORTHO05D003587 4.3e-17 93.6 99 45.5
CANSAT64G0731 Cannabis sativa HOM05D003575 ORTHO05D003587 4.7e-16 90.1 154 33.1
TAR626G1391 Trochodendron aralioides HOM05D003575 ORTHO05D003587 6.1e-16 89.7 91 45.1
CSS0012601 Camellia sinensis var. sinensis HOM05D003575 ORTHO05D003587 1.0e-15 89.0 114 41.2
CSS0035464 Camellia sinensis var. sinensis HOM05D003575 ORTHO05D003587 1.0e-15 89.0 114 41.2
Manes.12G063604 Manihot esculenta HOM05D003575 ORTHO05D003587 2.3e-15 87.8 123 35.0
MELO3C030470.2 Cucumis melo HOM05D003575 ORTHO05D003587 4.0e-15 87.0 93 43.0
Rhsim06G0177900 Rhododendron simsii HOM05D003575 ORTHO05D003587 5.2e-15 86.7 148 31.8
QL04p067739 Quercus lobata HOM05D003575 ORTHO05D003587 8.9e-15 85.9 121 35.5
CsaV3_3G046180 Cucumis sativus L. HOM05D003575 ORTHO05D003587 1.2e-14 85.5 93 44.1
Nn1g03152 Nelumbo nucifera HOM05D003575 ORTHO05D003587 1.2e-14 85.5 104 43.3
CANSAT21G1971 Cannabis sativa HOM05D003575 ORTHO05D003587 1.5e-14 85.1 135 33.3
Thecc.01G197600 Theobroma cacao HOM05D003575 ORTHO05D003587 2.0e-14 84.7 124 33.9
Dinv21311 Davidia involucrata HOM05D003575 ORTHO05D003587 2.6e-14 84.3 135 33.3
HanXRQChr04g0126411 Helianthus annuus HOM05D003575 ORTHO05D003587 2.6e-14 84.3 101 38.6
FAN25G1379 Fragaria x ananassa HOM05D003575 ORTHO05D003587 3.4e-14 84.0 118 39.0
Lsat_1_v5_gn_7_97980 Lactuca sativa HOM05D000074 ORTHO05D001293 4.4e-14 83.6 99 38.4
Sed0014379 Sechium edule HOM05D003575 ORTHO05D003587 4.4e-14 83.6 93 40.9
Actinidia07857 Actinidia chinensis HOM05D003575 ORTHO05D003587 7.5e-14 82.8 80 45.0
Gohir.A07G087300 Gossypium hirsutum HOM05D003575 ORTHO05D003587 7.5e-14 82.8 163 31.9
Ciclev10015675m.g Citrus clementina HOM05D003575 ORTHO05D003587 9.8e-14 82.4 140 32.1
Aqoxy4G01549 Aquilegia oxysepala HOM05D003575 ORTHO05D003587 1.3e-13 82.0 101 41.6
ClCG02G002950 Citrullus lanatus HOM05D003575 ORTHO05D003587 1.3e-13 82.0 103 40.8
Aqoxy5G03850 Aquilegia oxysepala HOM05D003575 ORTHO05D003587 1.7e-13 81.6 143 35.0
Hma1.2p1_0599F.1_g187070 Hydrangea macrophylla HOM05D003575 ORTHO05D003587 1.7e-13 81.6 124 34.7
Ah.01g002520 Amaranthus hybridus HOM05D004224 ORTHO05D006437 2.9e-13 80.9 101 39.6
CDE04G2197 Ceratophyllum demersum HOM05D003575 ORTHO05D003587 2.9e-13 80.9 82 45.1
DCAR_019672 Daucus carota HOM05D003575 ORTHO05D003587 2.9e-13 80.9 80 42.5
Aqoxy5G03849 Aquilegia oxysepala HOM05D003575 ORTHO05D003587 3.7e-13 80.5 97 41.2
Sabra02G0168700 Salix brachista HOM05D003575 ORTHO05D003587 3.7e-13 80.5 86 39.5
TPR.G22472 Trifolium pratense HOM05D003575 ORTHO05D003587 6.4e-13 79.7 78 38.5
vmacro12070 Vaccinium macrocarpon HOM05D003575 ORTHO05D003587 6.4e-13 79.7 114 36.8
Medtr3g082720 Medicago truncatula HOM05D003575 ORTHO05D003587 8.3e-13 79.3 90 38.9
ECA236G1196 Erigeron canadensis HOM05D003366 ORTHO05D004045 1.1e-12 79.0 153 32.0
Gohir.D07G092200 Gossypium hirsutum HOM05D003575 ORTHO05D003587 1.1e-12 79.0 100 36.0
Gorai.001G098800 Gossypium raimondii HOM05D003575 ORTHO05D003587 1.1e-12 79.0 100 36.0
Oeu029955.1 Olea europaea HOM05D003575 ORTHO05D003587 1.1e-12 79.0 116 32.8
TPR.G40538 Trifolium pratense HOM05D003575 ORTHO05D003587 1.9e-12 78.2 90 37.8
MBI15_g48140_MAGBIO Magnolia biondii HOM05D003575 ORTHO05D003587 2.4e-12 77.8 108 37.0
Duzib133G0340 Durio zibethinus HOM05D003575 ORTHO05D003587 3.2e-12 77.4 96 35.4
Phvul.007G122046 Phaseolus vulgaris HOM05D003575 ORTHO05D003587 3.2e-12 77.4 125 31.2
Ca_16343_v3 Cicer arietinum L. HOM05D003575 ORTHO05D003587 4.1e-12 77.0 105 37.1
ECA236G0897 Erigeron canadensis HOM05D003575 ORTHO05D003587 4.1e-12 77.0 91 38.5
Medtr3g082740 Medicago truncatula HOM05D003575 ORTHO05D003587 9.2e-12 75.9 120 33.3
HanXRQChr04g0126401 Helianthus annuus HOM05D003575 ORTHO05D003587 1.2e-11 75.5 116 37.1
PSO541G2609 Papaver somniferum HOM05D003575 ORTHO05D003587 1.2e-11 75.5 83 42.2
PSO675G6399 Papaver somniferum HOM05D003575 ORTHO05D003587 1.2e-11 75.5 83 42.2
Peaxi162Scf00047g02035 Petunia axillaris HOM05D003575 ORTHO05D003587 1.6e-11 75.1 94 34.0
Lj6g0014157 Lotus japonicus HOM05D003575 ORTHO05D003587 2.0e-11 74.7 108 34.3
PGSC0003DMG401004292 Solanum tuberosum HOM05D003575 ORTHO05D003587 2.0e-11 74.7 180 28.3
Sed0014111 Sechium edule HOM05D003575 ORTHO05D003587 2.7e-11 74.3 83 38.6
Peaxi162Scf00802g00028 Petunia axillaris HOM05D003575 ORTHO05D003587 3.5e-11 73.9 117 36.8
Solyc07g045320.3 Solanum lycopersicum HOM05D003575 ORTHO05D003587 3.5e-11 73.9 93 36.6
Solyc12g006060.2 Solanum lycopersicum HOM05D003575 ORTHO05D003587 3.5e-11 73.9 130 30.8
Sopen12g002030 Solanum pennellii HOM05D003575 ORTHO05D003587 3.5e-11 73.9 130 30.8
SGA_v2.0_scaffold407G51066 Striga asiatica HOM05D003575 ORTHO05D003587 4.6e-11 73.6 80 36.2
Hund01540 Selenicereus undatus HOM05D003575 ORTHO05D003587 6.0e-11 73.2 79 40.5
HanXRQChr16g0520571 Helianthus annuus HOM05D003575 ORTHO05D003587 7.8e-11 72.8 79 39.2
Lsat_1_v5_gn_7_97960 Lactuca sativa HOM05D003575 ORTHO05D003587 7.8e-11 72.8 109 33.9
AUR62029125 Chenopodium quinoa HOM05D003575 ORTHO05D003587 1.3e-10 72.0 80 41.2
Gohir.A11G148300 Gossypium hirsutum HOM05D003575 ORTHO05D003587 1.3e-10 72.0 123 32.5
Gorai.007G165400 Gossypium raimondii HOM05D003575 ORTHO05D003587 1.7e-10 71.6 96 36.5
Sopen07g023850 Solanum pennellii HOM05D003575 ORTHO05D003587 1.7e-10 71.6 93 36.6
AUR62035876 Chenopodium quinoa HOM05D003575 ORTHO05D003587 2.3e-10 71.2 80 40.0
Migut.L00790 Erythranthe guttata HOM05D003575 ORTHO05D003587 2.3e-10 71.2 82 37.8
Medtr6g042040 Medicago truncatula HOM05D003575 ORTHO05D003587 2.3e-10 71.2 138 30.4
Medtr6g042090 Medicago truncatula HOM05D003575 ORTHO05D003587 2.3e-10 71.2 90 34.4
VMungo0647G0230 Vigna mungo HOM05D003575 ORTHO05D003587 2.3e-10 71.2 126 31.0
AUR62014996 Chenopodium quinoa HOM05D003575 ORTHO05D003587 3.0e-10 70.9 80 38.8
Gohir.D11G155100 Gossypium hirsutum HOM05D003575 ORTHO05D003587 3.0e-10 70.9 96 35.4
Psat5g104640 Pisum sativum HOM05D003575 ORTHO05D003587 3.0e-10 70.9 90 36.7
arahy.Tifrunner.gnm1.ann1.04VE6P Arachis hypogaea HOM05D003575 ORTHO05D003587 3.9e-10 70.5 103 32.0
CiPaw.04G197600 Carya illinoinensis HOM05D003575 ORTHO05D003587 5.0e-10 70.1 83 36.1
MBI15_g44598_MAGBIO Magnolia biondii HOM05D003575 ORTHO05D003587 6.6e-10 69.7 108 35.2
PGSC0003DMG400017406 Solanum tuberosum HOM05D003575 ORTHO05D003587 6.6e-10 69.7 103 35.0
Glyma.13G186300 Glycine max HOM05D003575 ORTHO05D003587 8.6e-10 69.3 141 31.2
Nitab4.5_0004644g0050 Nicotiana tabacum HOM05D003575 ORTHO05D003587 1.5e-09 68.6 113 32.7
Nitab4.5_0009864g0030 Nicotiana tabacum HOM05D003575 ORTHO05D003587 1.5e-09 68.6 82 39.0
arahy.Tifrunner.gnm1.ann1.F2CSMS Arachis hypogaea HOM05D003575 ORTHO05D003587 1.9e-09 68.2 103 31.1
arahy.Tifrunner.gnm1.ann1.RMR7W1 Arachis hypogaea HOM05D003575 ORTHO05D003587 1.9e-09 68.2 103 31.1
CAN.G437.6 Capsicum annuum HOM05D003575 ORTHO05D003587 1.9e-09 68.2 93 36.6
Glyma.13G007400 Glycine max HOM05D003575 ORTHO05D003587 2.5e-09 67.8 74 39.2
ATR0751G270 Amborella trichopoda HOM05D003575 ORTHO05D003587 3.3e-09 67.4 134 28.4
MSTRG.426 Avicennia marina HOM05D003575 ORTHO05D003587 3.3e-09 67.4 89 34.8
CAN.G437.9 Capsicum annuum HOM05D003575 ORTHO05D003587 7.3e-09 66.2 85 36.5
Lalb_Chr14g0362581 Lupinus albus HOM05D003575 ORTHO05D003587 1.2e-08 65.5 116 31.0
Haze_12614 Corylus avellana HOM05D003366 ORTHO05D004045 1.6e-08 65.1 80 36.2
Haze_12603 Corylus avellana HOM05D003366 ORTHO05D004045 2.8e-08 64.3 74 37.8
Phvul.011G189400 Phaseolus vulgaris HOM05D003575 ORTHO05D003587 2.8e-08 64.3 82 29.3
Nitab4.5_0000622g0080 Nicotiana tabacum HOM05D003575 ORTHO05D003587 1.1e-07 62.4 93 33.3
SHI10168 Sapria himalayana HOM05D003575 ORTHO05D003587 1.4e-07 62.0 75 36.0
PSO339G5808 Papaver somniferum HOM05D003575 ORTHO05D003587 5.2e-07 60.1 64 40.6
SalBow1G3222 Salvia bowleyana HOM05D003575 ORTHO05D003587 3.4e-06 57.4 72 33.3


User provided reference genes

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