Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN11G0135 Fragaria x ananassa HOM05D005295 ORTHO05D005962 3.9e-117 424.9 223 100.0
FvH4_3g19520 Fragaria vesca HOM05D005295 ORTHO05D005962 4.6e-110 401.4 236 92.4
FAN21G0215 Fragaria x ananassa HOM05D005295 ORTHO05D005962 1.3e-107 393.3 236 91.1
FAN25G2205 Fragaria x ananassa HOM05D005295 ORTHO05D005962 4.5e-105 384.8 236 89.4
RcHm_v2.0_Chr5g0032761 Rosa chinensis HOM05D005295 ORTHO05D005962 8.2e-99 364.0 238 84.9
Prupe.4G176600 Prunus persica HOM05D005295 ORTHO05D005962 3.1e-74 282.3 232 66.4
MD03G1231400 Malus domestica HOM05D005295 ORTHO05D005962 2.0e-73 279.6 232 62.9
Haze_09452 Corylus avellana HOM05D005295 ORTHO05D005962 8.3e-67 257.7 235 62.1
Cfa020562 Carpinus fangiana HOM05D005295 ORTHO05D005962 1.6e-62 243.4 237 58.6
Lalb_Chr20g0109501 Lupinus albus HOM05D005295 ORTHO05D005962 1.4e-61 240.4 232 55.6
CiPaw.11G171800 Carya illinoinensis HOM05D005295 ORTHO05D005962 1.8e-61 240.0 232 57.3
VMungo1080G0752 Vigna mungo HOM05D005295 ORTHO05D005962 4.0e-61 238.8 232 56.9
Lj3g0021836 Lotus japonicus HOM05D005295 ORTHO05D005962 5.2e-61 238.4 232 57.3
Sed0001385 Sechium edule HOM05D005295 ORTHO05D005962 6.8e-61 238.0 233 53.6
Phvul.005G075000 Phaseolus vulgaris HOM05D005295 ORTHO05D005962 2.0e-60 236.5 232 56.0
Hma1.2p1_0387F.1_g141920 Hydrangea macrophylla HOM05D005295 ORTHO05D005962 5.8e-60 235.0 229 59.4
Glyma.13G273800 Glycine max HOM05D005295 ORTHO05D005962 2.2e-59 233.0 232 56.0
Sabra11G0101800 Salix brachista HOM05D005295 ORTHO05D005962 2.9e-59 232.6 229 58.5
Potri.011G116200 Populus trichocarpa HOM05D005295 ORTHO05D005962 3.7e-59 232.3 229 57.6
ClCG11G017890 Citrullus lanatus HOM05D005295 ORTHO05D005962 8.3e-59 231.1 233 54.1
Actinidia12794 Actinidia chinensis HOM05D005295 ORTHO05D005962 1.4e-58 230.3 233 55.8
CANSAT56G1083 Cannabis sativa HOM05D005295 ORTHO05D005962 2.4e-58 229.6 242 50.8
Manes.03G106500 Manihot esculenta HOM05D005295 ORTHO05D005962 3.2e-58 229.2 235 57.9
Medtr2g078650 Medicago truncatula HOM05D005295 ORTHO05D005962 4.1e-58 228.8 226 55.3
Aa31LG5G9970 Aethionema arabicum HOM05D005295 ORTHO05D005962 5.4e-58 228.4 231 51.1
CSS0001236 Camellia sinensis var. sinensis HOM05D005295 ORTHO05D005962 7.0e-58 228.0 244 55.3
arahy.Tifrunner.gnm1.ann1.3CLR9I Arachis hypogaea HOM05D005295 ORTHO05D005962 1.6e-57 226.9 247 53.0
CsaV3_4G033520 Cucumis sativus L. HOM05D005295 ORTHO05D005962 2.7e-57 226.1 230 52.6
Sabra16G0260000 Salix brachista HOM05D005295 ORTHO05D005962 2.7e-57 226.1 233 53.6
arahy.Tifrunner.gnm1.ann1.B1NQ7W Arachis hypogaea HOM05D005295 ORTHO05D005962 3.5e-57 225.7 247 52.6
MELO3C025603.2 Cucumis melo HOM05D005295 ORTHO05D005962 3.5e-57 225.7 232 53.0
TWI38G0013 Tripterygium wilfordii HOM05D005295 ORTHO05D005962 7.8e-57 224.6 235 51.5
Peaxi162Scf00000g00314 Petunia axillaris HOM05D005295 ORTHO05D005962 1.9e-55 219.9 232 54.3
Psat0s1402g0040 Pisum sativum HOM05D005295 ORTHO05D005962 2.5e-55 219.5 226 52.7
Migut.M00784 Erythranthe guttata HOM05D005295 ORTHO05D005962 4.3e-55 218.8 237 54.0
Thhalv10026112m.g Eutrema salsugineum HOM05D005295 ORTHO05D005962 5.6e-55 218.4 241 51.0
Thecc.07G095500 Theobroma cacao HOM05D005295 ORTHO05D005962 5.6e-55 218.4 237 51.1
Potri.001G396900 Populus trichocarpa HOM05D005295 ORTHO05D005962 7.3e-55 218.0 232 55.2
Rhsim06G0201600 Rhododendron simsii HOM05D005295 ORTHO05D005962 1.6e-54 216.9 236 55.5
TWI39G0015 Tripterygium wilfordii HOM05D005295 ORTHO05D005962 1.6e-54 216.9 234 51.3
CARHR235220 Cardamine hirsuta HOM05D005295 ORTHO05D005962 2.8e-54 216.1 242 51.7
GSVIVG01014296001 Vitis vinifera HOM05D005295 ORTHO05D005962 3.6e-54 215.7 231 50.6
THA.LOC104811877 Tarenaya hassleriana HOM05D005295 ORTHO05D005962 4.7e-54 215.3 229 50.2
C01p23710 Brassica napus HOM05D005295 ORTHO05D005962 8.1e-54 214.5 242 50.4
Carub.0007s1331 Capsella rubella HOM05D005295 ORTHO05D005962 8.1e-54 214.5 238 50.4
BcaNung06687 Brassica carinata HOM05D005295 ORTHO05D005962 1.1e-53 214.2 242 50.4
Cc05_g11790 Coffea canephora HOM05D005295 ORTHO05D005962 1.1e-53 214.2 241 51.5
Solyc12g013910.2 Solanum lycopersicum HOM05D005295 ORTHO05D005962 1.1e-53 214.2 240 52.9
Gohir.A04G035200 Gossypium hirsutum HOM05D005295 ORTHO05D005962 1.4e-53 213.8 239 49.0
Sopen12g005670 Solanum pennellii HOM05D005295 ORTHO05D005962 1.4e-53 213.8 240 52.9
A01p18770 Brassica napus HOM05D005295 ORTHO05D005962 1.8e-53 213.4 243 50.2
BolC1t02323H Brassica oleracea HOM05D005295 ORTHO05D005962 1.8e-53 213.4 242 50.4
Sp7g25480 Schrenkiella parvula HOM05D005295 ORTHO05D005962 2.3e-53 213.0 241 50.6
PGSC0003DMG400015366 Solanum tuberosum HOM05D005295 ORTHO05D005962 2.3e-53 213.0 238 52.9
Duzib213G0204 Durio zibethinus HOM05D005295 ORTHO05D005962 3.1e-53 212.6 237 51.5
AL7G25230 Arabidopsis lyrata HOM05D005295 ORTHO05D005962 5.2e-53 211.8 241 50.6
Oeu019302.2 Olea europaea HOM05D005295 ORTHO05D005962 8.9e-53 211.1 240 47.9
AT4G27540 Arabidopsis thaliana HOM05D005295 ORTHO05D005962 1.2e-52 210.7 241 50.2
Gorai.009G376000 Gossypium raimondii HOM05D005295 ORTHO05D005962 2.0e-52 209.9 239 48.1
Ca_03531_v3 Cicer arietinum L. HOM05D005295 ORTHO05D005962 4.4e-52 208.8 232 54.7
Cpa.g.sc622.2 Carica papaya HOM05D005295 ORTHO05D005962 5.8e-52 208.4 230 51.3
PGR083G0729 Punica granatum HOM05D005295 ORTHO05D005962 7.5e-52 208.0 226 52.7
COL.COLO4_36711 Corchorus olitorius HOM05D005295 ORTHO05D005962 9.8e-52 207.6 238 48.7
BcaNung06688 Brassica carinata HOM05D005295 ORTHO05D005962 1.3e-51 207.2 243 49.0
BraA01t01821Z Brassica rapa HOM05D005295 ORTHO05D005962 1.3e-51 207.2 243 49.8
Eucgr.F01159 Eucalyptus grandis HOM05D005295 ORTHO05D005962 1.7e-51 206.8 228 53.5
ECA234G3281 Erigeron canadensis HOM05D005295 ORTHO05D005962 2.2e-51 206.5 241 51.5
Lsat_1_v5_gn_5_128440 Lactuca sativa HOM05D005295 ORTHO05D005962 3.7e-51 205.7 239 46.0
Lj8A154T78 Lonicera japonica HOM05D005295 ORTHO05D005962 4.9e-51 205.3 259 49.4
TPR.G7946 Trifolium pratense HOM05D005295 ORTHO05D005962 6.4e-51 204.9 226 50.4
Nn1g04175 Nelumbo nucifera HOM05D005295 ORTHO05D005962 1.9e-50 203.4 243 49.4
HanXRQChr12g0361161 Helianthus annuus HOM05D005295 ORTHO05D005962 3.2e-50 202.6 245 46.9
SGA_v2.0_scaffold34G13800 Striga asiatica HOM05D005295 ORTHO05D005962 3.2e-50 202.6 222 51.4
Aqoxy1G02337 Aquilegia oxysepala HOM05D005295 ORTHO05D005962 4.1e-50 202.2 236 50.4
SGA_v2.0_scaffold73G24237 Striga asiatica HOM05D005295 ORTHO05D005962 1.6e-49 200.3 230 48.7
Ciclev10009380m.g Citrus clementina HOM05D005295 ORTHO05D005962 6.0e-49 198.4 228 52.6
Ciclev10009383m.g Citrus clementina HOM05D005295 ORTHO05D005962 6.0e-49 198.4 228 53.1
CAN.G213.18 Capsicum annuum HOM05D005295 ORTHO05D005962 7.8e-49 198.0 243 50.2
PSO675G2991 Papaver somniferum HOM05D005295 ORTHO05D005962 1.7e-48 196.8 250 46.0
SalBow8G4458 Salvia bowleyana HOM05D005295 ORTHO05D005962 6.6e-48 194.9 233 48.9
unitig_0.g1149 Utricularia gibba HOM05D005295 ORTHO05D005962 8.6e-48 194.5 229 47.2
Hund22882 Selenicereus undatus HOM05D005295 ORTHO05D005962 1.9e-47 193.4 257 47.9
EL10Ac4g08225 Beta vulgaris HOM05D005295 ORTHO05D005962 4.3e-47 192.2 252 48.0
Ah.06g184530 Amaranthus hybridus HOM05D005295 ORTHO05D005962 9.5e-47 191.0 257 44.7
Nitab4.5_0000332g0010 Nicotiana tabacum HOM05D005295 ORTHO05D005962 8.1e-46 188.0 259 45.2
MBI02_g22345_MAGBIO Magnolia biondii HOM05D005295 ORTHO05D005962 3.1e-45 186.0 232 47.0
AUR62036172 Chenopodium quinoa HOM05D005295 ORTHO05D005962 5.8e-44 181.8 258 46.5
Gohir.D05G348200 Gossypium hirsutum HOM05D005295 ORTHO05D005962 7.6e-44 181.4 239 43.5
Sc16g0007150 Simmondsia chinensis HOM05D005295 ORTHO05D005962 2.2e-43 179.9 221 44.8
QL08p022700 Quercus lobata HOM05D005295 ORTHO05D005962 3.8e-43 179.1 350 37.7
Atru.chr2.2424 Acer truncatum HOM05D005295 ORTHO05D005962 2.1e-41 173.3 257 43.6
CDE05G1939 Ceratophyllum demersum HOM05D005295 ORTHO05D005962 5.1e-40 168.7 220 44.1
BolC2t07912H Brassica oleracea HOM05D005295 ORTHO05D005962 3.6e-38 162.5 226 41.6
CDE05G3097 Ceratophyllum demersum HOM05D006331 ORTHO05D008043 3.6e-38 162.5 224 45.1
BcaC03g14369 Brassica carinata HOM05D005295 ORTHO05D005962 6.2e-38 161.8 226 41.6
BcaB05g22086 Brassica carinata HOM05D005295 ORTHO05D005962 6.9e-37 158.3 218 41.3
MSTRG.6822 Avicennia marina HOM05D005295 ORTHO05D005962 8.9e-37 157.9 188 52.1
AUR62019458 Chenopodium quinoa HOM05D005295 ORTHO05D005962 3.4e-36 156.0 231 44.6
Zm00001eb231100 Zea mays HOM05D005295 ORTHO05D005962 4.4e-36 155.6 231 43.3
C02p17850 Brassica napus HOM05D005295 ORTHO05D005962 4.9e-35 152.1 226 38.5
DCAR_013119 Daucus carota HOM05D005295 ORTHO05D005962 4.9e-35 152.1 203 40.4
vmacro11885 Vaccinium macrocarpon HOM05D005295 ORTHO05D005962 8.4e-35 151.4 225 40.9
ATR0150G019 Amborella trichopoda HOM05D005295 ORTHO05D005962 4.6e-33 145.6 235 37.9
BcaC03g14372 Brassica carinata HOM05D005295 ORTHO05D005962 6.0e-33 145.2 236 38.1
BolC2t07916H Brassica oleracea HOM05D005295 ORTHO05D005962 6.0e-33 145.2 236 38.1
Thhalv10015755m.g Eutrema salsugineum HOM05D005295 ORTHO05D005962 1.7e-32 143.7 198 39.9
HPP92_003730 Vanilla planifolia HOM05D005295 ORTHO05D005962 1.7e-32 143.7 231 38.1
C02p17830 Brassica napus HOM05D005295 ORTHO05D005962 1.3e-30 137.5 168 42.3
A02p10710 Brassica napus HOM05D005295 ORTHO05D005962 9.0e-29 131.3 168 41.1
BraA02t06134Z Brassica rapa HOM05D005295 ORTHO05D005962 9.0e-29 131.3 168 41.1
SEGI_06803 Sequoiadendron giganteum HOM05D005295 ORTHO05D005962 7.6e-28 128.3 220 34.5
MD06G1175000 Malus domestica HOM05D005295 ORTHO05D005962 2.2e-27 126.7 107 58.9
Dinv14935 Davidia involucrata HOM05D005295 ORTHO05D005962 1.6e-25 120.6 133 57.1
Eucgr.F01198 Eucalyptus grandis HOM05D005295 ORTHO05D005962 2.7e-25 119.8 138 52.2
Ciclev10010240m.g Citrus clementina HOM05D005295 ORTHO05D005962 6.7e-24 115.2 219 42.5
Pp3c9_10810 Physcomitrium patens HOM05D005295 ORTHO05D005962 7.4e-23 111.7 239 33.1
Lj1C840T8 Lonicera japonica HOM05D005295 ORTHO05D005962 4.0e-21 105.9 125 48.8
Os09g0134400 Oryza sativa ssp. japonica HOM05D005295 ORTHO05D005962 5.8e-20 102.1 231 35.5
BcaNung07036 Brassica carinata HOM05D005295 ORTHO05D005962 1.3e-19 100.9 88 54.5
SMO285G0011 Selaginella moellendorffii HOM05D005295 ORTHO05D005962 1.1e-18 97.8 222 29.7
Dinv12314 Davidia involucrata HOM05D005295 ORTHO05D005962 7.9e-17 91.7 128 45.3
Mapoly0124s0020 Marchantia polymorpha HOM05D005295 ORTHO05D005962 3.0e-16 89.7 228 31.6
Carub.0003s1487 Capsella rubella HOM05D005295 ORTHO05D005962 2.1e-14 83.6 166 36.7
BcaB04g20941 Brassica carinata HOM05D001464 ORTHO05D005962 1.3e-11 74.3 150 36.7
BcaC09g48479 Brassica carinata HOM05D005295 ORTHO05D005962 2.2e-11 73.6 118 41.5
BolC1t04893H Brassica oleracea HOM05D005295 ORTHO05D005962 2.2e-11 73.6 118 41.5
BcaB06g26783 Brassica carinata HOM05D005295 ORTHO05D005962 6.5e-11 72.0 83 45.8
A01p38800 Brassica napus HOM05D005295 ORTHO05D005962 1.1e-10 71.2 118 40.7
C01p49340 Brassica napus HOM05D005295 ORTHO05D005962 1.1e-10 71.2 118 39.8
BraA01t03927Z Brassica rapa HOM05D005295 ORTHO05D005962 1.1e-10 71.2 118 40.7
Hma1.2p1_0387F.1_g141930 Hydrangea macrophylla HOM05D005295 ORTHO05D005962 1.2e-09 67.8 45 57.8
Duzib268G1416 Durio zibethinus HOM05D005295 ORTHO05D005962 2.7e-09 66.6 197 27.9
AagrBONN_evm.TU.Sc2ySwM_117.1842 Anthoceros agrestis HOM05D005295 ORTHO05D005962 9.6e-07 58.2 154 29.9
AL3G27610 Arabidopsis lyrata HOM05D005295 ORTHO05D005962 2.8e-06 56.6 127 31.5


User provided reference genes

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