Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN11G0057 Fragaria x ananassa HOM05D000718 ORTHO05D007431 3.8e-271 937.6 469 100.0
FvH4_3g18310 Fragaria vesca HOM05D000718 ORTHO05D007431 1.6e-266 922.2 472 97.5
FAN16G1727 Fragaria x ananassa HOM05D000718 ORTHO05D007431 1.7e-263 912.1 481 95.4
FAN25G1161 Fragaria x ananassa HOM05D000718 ORTHO05D007431 7.9e-253 876.7 451 95.6
RcHm_v2.0_Chr5g0030941 Rosa chinensis HOM05D000718 ORTHO05D007431 2.3e-244 848.6 451 92.9
Prupe.4G164800 Prunus persica HOM05D000718 ORTHO05D007431 2.3e-228 795.4 458 85.2
MD03G1243500 Malus domestica HOM05D000718 ORTHO05D007431 6.3e-226 787.3 454 85.2
FAN21G3716 Fragaria x ananassa HOM05D000718 ORTHO05D007431 5.0e-223 777.7 393 96.2
Haze_09324 Corylus avellana HOM05D000718 ORTHO05D007431 2.1e-205 719.2 470 75.7
CANSAT35G0289 Cannabis sativa HOM05D000718 ORTHO05D007431 1.4e-204 716.5 456 76.8
CiPaw.11G160400 Carya illinoinensis HOM05D000718 ORTHO05D007431 2.0e-203 712.6 458 75.5
Lj3g0001987 Lotus japonicus HOM05D000718 ORTHO05D007431 2.0e-203 712.6 457 75.1
GSVIVG01014199001 Vitis vinifera HOM05D000718 ORTHO05D007431 7.0e-201 704.1 456 74.3
Ca_12194_v3 Cicer arietinum L. HOM05D000718 ORTHO05D007431 2.7e-200 702.2 457 73.3
Cfa019567 Carpinus fangiana HOM05D000718 ORTHO05D007431 8.6e-199 697.2 443 76.5
Eucgr.K01884 Eucalyptus grandis HOM05D000718 ORTHO05D007431 4.3e-198 694.9 450 74.7
Dinv18364 Davidia involucrata HOM05D000718 ORTHO05D007431 1.6e-197 693.0 459 74.7
PGR031G2045 Punica granatum HOM05D000718 ORTHO05D007431 8.1e-197 690.6 454 73.6
Duzib187G1570 Durio zibethinus HOM05D000718 ORTHO05D007431 1.1e-196 690.3 450 73.1
Psat0s1037g0040 Pisum sativum HOM05D000718 ORTHO05D007431 1.4e-196 689.9 460 72.8
Rhsim06G0207800 Rhododendron simsii HOM05D000718 ORTHO05D007431 2.3e-196 689.1 454 74.4
Lalb_Chr01g0006831 Lupinus albus HOM05D000718 ORTHO05D007431 4.0e-196 688.3 453 72.8
THA.LOC104822564 Tarenaya hassleriana HOM05D000718 ORTHO05D007431 4.4e-195 684.9 456 72.1
Thecc.07G114900 Theobroma cacao HOM05D000718 ORTHO05D007431 4.4e-195 684.9 447 72.5
arahy.Tifrunner.gnm1.ann1.6IHZ0U Arachis hypogaea HOM05D000718 ORTHO05D007431 5.8e-195 684.5 459 72.8
TPR.G16488 Trifolium pratense HOM05D000718 ORTHO05D007431 7.5e-195 684.1 458 72.3
Sed0007644 Sechium edule HOM05D000718 ORTHO05D007431 4.9e-194 681.4 453 71.1
Glyma.12G157600 Glycine max HOM05D000718 ORTHO05D007431 8.3e-194 680.6 457 72.0
Lj1A829G32 Lonicera japonica HOM05D000718 ORTHO05D007431 1.4e-193 679.9 457 71.8
COL.COLO4_17547 Corchorus olitorius HOM05D000718 ORTHO05D007431 1.9e-193 679.5 471 70.1
ClCG11G017460 Citrullus lanatus HOM05D000718 ORTHO05D007431 2.4e-193 679.1 457 72.2
MELO3C025639.2 Cucumis melo HOM05D000718 ORTHO05D007431 3.2e-193 678.7 457 72.4
QL08p026242 Quercus lobata HOM05D000718 ORTHO05D007431 1.2e-192 676.8 470 72.8
arahy.Tifrunner.gnm1.ann1.STN4DM Arachis hypogaea HOM05D000718 ORTHO05D007431 1.6e-192 676.4 455 72.5
Atru.chr2.2147 Acer truncatum HOM05D000718 ORTHO05D007431 2.7e-192 675.6 456 72.4
Glyma.06G228900 Glycine max HOM05D000718 ORTHO05D007431 3.0e-191 672.2 458 71.2
Ah.04g164270 Amaranthus hybridus HOM05D000718 ORTHO05D007431 4.3e-190 668.3 457 71.8
Actinidia12577 Actinidia chinensis HOM05D000718 ORTHO05D007431 9.5e-190 667.2 457 71.8
Thhalv10020708m.g Eutrema salsugineum HOM05D000718 ORTHO05D007431 2.1e-189 666.0 455 71.6
TWI39G0589 Tripterygium wilfordii HOM05D000718 ORTHO05D007431 3.6e-189 665.2 453 71.3
CARHR089850 Cardamine hirsuta HOM05D000718 ORTHO05D007431 1.4e-188 663.3 455 69.9
Medtr8g464030 Medicago truncatula HOM05D000718 ORTHO05D007431 1.4e-188 663.3 497 66.6
Carub.0003s1457 Capsella rubella HOM05D000718 ORTHO05D007431 2.4e-188 662.5 455 69.9
Potri.001G390700 Populus trichocarpa HOM05D000718 ORTHO05D007431 2.4e-188 662.5 454 70.7
Gohir.A01G054400 Gossypium hirsutum HOM05D000718 ORTHO05D007431 4.0e-188 661.8 449 70.6
AL3G27230 Arabidopsis lyrata HOM05D000718 ORTHO05D007431 8.9e-188 660.6 455 69.9
Lalb_Chr03g0031171 Lupinus albus HOM05D000718 ORTHO05D007431 1.2e-187 660.2 455 70.3
Gorai.002G054700 Gossypium raimondii HOM05D000718 ORTHO05D007431 1.5e-187 659.8 449 70.2
Gohir.D01G042724 Gossypium hirsutum HOM05D000718 ORTHO05D007431 4.4e-187 658.3 449 69.9
EL10Ac4g08344 Beta vulgaris HOM05D000718 ORTHO05D007431 7.6e-187 657.5 457 70.2
CAN.G375.14 Capsicum annuum HOM05D000718 ORTHO05D007431 6.4e-186 654.4 455 70.1
Nitab4.5_0006953g0050 Nicotiana tabacum HOM05D000718 ORTHO05D007431 1.1e-185 653.7 455 70.5
BolC5t33913H Brassica oleracea HOM05D000718 ORTHO05D007431 1.4e-185 653.3 455 70.1
PGSC0003DMG400007071 Solanum tuberosum HOM05D000718 ORTHO05D007431 1.4e-185 653.3 455 70.3
DCAR_013156 Daucus carota HOM05D000718 ORTHO05D007431 2.4e-185 652.5 455 70.3
Phvul.011G162200 Phaseolus vulgaris HOM05D000718 ORTHO05D007431 3.2e-185 652.1 460 69.3
Nitab4.5_0003565g0040 Nicotiana tabacum HOM05D000718 ORTHO05D007431 7.1e-185 651.0 455 70.5
AT3G14910 Arabidopsis thaliana HOM05D000718 ORTHO05D007431 1.6e-184 649.8 455 68.6
Peaxi162Scf00111g01475 Petunia axillaris HOM05D000718 ORTHO05D007431 1.6e-184 649.8 456 70.4
AUR62042779 Chenopodium quinoa HOM05D000718 ORTHO05D007431 2.7e-184 649.0 471 67.9
BcaB06g25332 Brassica carinata HOM05D000718 ORTHO05D007431 3.5e-184 648.7 448 70.5
Sopen07g030690 Solanum pennellii HOM05D000718 ORTHO05D007431 3.5e-184 648.7 455 69.9
Solyc07g062450.3 Solanum lycopersicum HOM05D000718 ORTHO05D007431 4.6e-184 648.3 455 69.7
Oeu025333.1 Olea europaea HOM05D000718 ORTHO05D007431 7.8e-184 647.5 461 69.6
Hund02254 Selenicereus undatus HOM05D000718 ORTHO05D007431 7.8e-184 647.5 453 70.0
A05p34500 Brassica napus HOM05D000718 ORTHO05D007431 3.0e-183 645.6 451 69.8
BraA05t22270Z Brassica rapa HOM05D000718 ORTHO05D007431 3.0e-183 645.6 451 69.8
Cc05_g11090 Coffea canephora HOM05D000718 ORTHO05D007431 1.2e-181 640.2 457 70.0
Aa31LG8G2120 Aethionema arabicum HOM05D000718 ORTHO05D007431 4.7e-181 638.3 451 69.0
Migut.H01998 Erythranthe guttata HOM05D000718 ORTHO05D007431 6.2e-181 637.9 466 68.7
vmacro23465 Vaccinium macrocarpon HOM05D000718 ORTHO05D007431 5.3e-180 634.8 471 67.9
SalBow7G4178 Salvia bowleyana HOM05D000718 ORTHO05D007431 1.5e-179 633.3 463 68.7
SalBow7G4376 Salvia bowleyana HOM05D000718 ORTHO05D007431 9.9e-179 630.6 463 68.3
CSS0021542 Camellia sinensis var. sinensis HOM05D000718 ORTHO05D007431 1.6e-176 623.2 457 69.1
SGA_v2.0_scaffold130G34293 Striga asiatica HOM05D000718 ORTHO05D007431 3.5e-176 622.1 455 68.4
Nn1g04439 Nelumbo nucifera HOM05D000718 ORTHO05D007431 1.3e-175 620.2 425 72.0
HanXRQChr15g0476211 Helianthus annuus HOM05D000718 ORTHO05D007431 1.1e-174 617.1 458 67.5
PSO782G3001 Papaver somniferum HOM05D000718 ORTHO05D007431 7.3e-174 614.4 458 65.5
Aqoxy4G00321 Aquilegia oxysepala HOM05D000718 ORTHO05D007431 9.6e-174 614.0 465 64.9
ECA240G1747 Erigeron canadensis HOM05D000718 ORTHO05D007431 3.6e-173 612.1 456 66.4
PSO478G1672 Papaver somniferum HOM05D000718 ORTHO05D007431 3.6e-173 612.1 458 65.3
Manes.03G101200 Manihot esculenta HOM05D000718 ORTHO05D007431 4.0e-172 608.6 395 73.2
C05p52240 Brassica napus HOM05D000718 ORTHO05D007431 6.9e-172 607.8 422 69.9
Lsat_1_v5_gn_9_99900 Lactuca sativa HOM05D000718 ORTHO05D007431 9.0e-172 607.4 454 67.2
MBI07_g09566_MAGBIO Magnolia biondii HOM05D000718 ORTHO05D007431 1.4e-169 600.1 513 59.5
Nn1g09174 Nelumbo nucifera HOM05D000718 ORTHO05D007431 1.4e-169 600.1 458 66.4
VMungo1127G0879 Vigna mungo HOM05D000718 ORTHO05D007431 1.1e-164 583.9 401 70.1
CDE04G1093 Ceratophyllum demersum HOM05D000718 ORTHO05D007431 2.6e-163 579.3 454 62.8
AUR62019575 Chenopodium quinoa HOM05D000718 ORTHO05D007431 1.1e-161 573.9 425 65.6
CSS0043856 Camellia sinensis var. sinensis HOM05D000718 ORTHO05D007431 4.3e-158 562.0 455 62.2
vmacro11939 Vaccinium macrocarpon HOM05D000718 ORTHO05D007431 1.0e-154 550.8 466 62.2
ATR0602G196 Amborella trichopoda HOM05D000718 ORTHO05D007431 2.5e-153 546.2 453 59.8
CSS0014195 Camellia sinensis var. sinensis HOM05D000718 ORTHO05D007431 6.0e-152 541.6 455 62.2
unitig_52.g17395 Utricularia gibba HOM05D000718 ORTHO05D007431 7.9e-144 514.6 462 57.8
HPP92_023429 Vanilla planifolia HOM05D000718 ORTHO05D007431 2.7e-136 489.6 460 55.7
MD11G1263600 Malus domestica HOM05D000718 ORTHO05D007431 3.6e-136 489.2 281 85.1
Os09g0315800 Oryza sativa ssp. japonica HOM05D000718 ORTHO05D007431 3.6e-136 489.2 469 57.1
Ciclev10021305m.g Citrus clementina HOM05D000718 ORTHO05D007431 9.7e-134 481.1 308 77.6
SEGI_16322 Sequoiadendron giganteum HOM05D000718 ORTHO05D007431 2.8e-133 479.6 448 54.2
unitig_26.g9517 Utricularia gibba HOM05D005139 ORTHO05D006125 2.2e-122 443.4 415 56.1
Zm00001eb309730 Zea mays HOM05D000718 ORTHO05D007431 2.7e-120 436.4 337 63.5
CsaV3_4G033110 Cucumis sativus L. HOM05D000718 ORTHO05D007431 1.2e-115 421.0 300 66.7
Sc16g0007570 Simmondsia chinensis HOM05D000718 ORTHO05D007431 1.2e-110 404.4 299 69.2
vmacro11937 Vaccinium macrocarpon HOM05D000718 ORTHO05D007431 8.3e-101 371.7 329 61.4
SHI27609 Sapria himalayana HOM05D000718 ORTHO05D007431 2.0e-99 367.1 404 47.0
AagrBONN_evm.TU.Sc2ySwM_228.1801 Anthoceros agrestis HOM05D000718 ORTHO05D007431 4.5e-99 365.9 453 45.5
vmacro23384 Vaccinium macrocarpon HOM05D000718 ORTHO05D007431 3.6e-96 356.3 343 57.7
Thecc.07G114700 Theobroma cacao HOM05D000718 ORTHO05D007431 2.0e-94 350.5 376 49.5
BcaB06g29518 Brassica carinata HOM05D000718 ORTHO05D002712 9.2e-92 341.7 450 45.3
Sp3g13120 Schrenkiella parvula HOM05D000718 ORTHO05D007431 1.6e-88 330.9 229 65.1
SMO367G0522 Selaginella moellendorffii HOM05D000718 ORTHO05D007431 3.0e-82 310.1 454 40.7
Pp3c4_25540 Physcomitrium patens HOM05D000718 ORTHO05D007431 5.1e-82 309.3 465 38.7
Mapoly0061s0004 Marchantia polymorpha HOM05D000718 ORTHO05D007431 2.5e-81 307.0 453 40.0
Psat4g090840 Pisum sativum HOM05D000718 ORTHO05D007431 6.2e-80 302.4 244 64.3
Psat3g077000 Pisum sativum HOM05D000718 ORTHO05D007431 1.9e-76 290.8 253 55.3
vmacro11938 Vaccinium macrocarpon HOM05D000718 ORTHO05D007431 3.3e-73 280.0 297 53.5
MSTRG.14233 Avicennia marina HOM05D000718 ORTHO05D007431 4.3e-73 279.6 231 60.2
Sc16g0007580 Simmondsia chinensis HOM05D000718 ORTHO05D007431 4.2e-60 236.5 162 66.0
Thecc.07G115900 Theobroma cacao HOM05D000718 ORTHO05D007431 2.5e-57 227.3 157 63.7
Hund02252 Selenicereus undatus HOM05D000718 ORTHO05D007431 2.6e-46 190.7 172 63.4
MD11G1263700 Malus domestica HOM05D000718 ORTHO05D007431 5.8e-46 189.5 137 70.1
Cpa.g.sc77.7 Carica papaya HOM05D000718 ORTHO05D007431 1.1e-41 175.3 117 73.5
PGSC0003DMG400011947 Solanum tuberosum HOM05D000718 ORTHO05D007431 3.7e-40 170.2 119 67.2
Thecc.07G115200 Theobroma cacao HOM05D000718 ORTHO05D007431 3.4e-38 163.7 119 61.3
TAR627G0847 Trochodendron aralioides HOM05D000718 ORTHO05D007431 1.2e-35 155.2 127 59.1
Psat2g113040 Pisum sativum HOM05D000718 ORTHO05D004709 4.6e-27 126.7 102 64.7
CAN.G713.20 Capsicum annuum HOM05D000718 ORTHO05D007431 2.2e-21 107.8 83 59.0
CBR_g49411 Chara braunii HOM05D000019 ORTHO05D000353 7.9e-19 99.4 320 29.1
Thecc.07G114000 Theobroma cacao HOM05D000718 ORTHO05D007431 2.0e-17 94.7 99 45.5
Thecc.07G114100 Theobroma cacao HOM05D000718 ORTHO05D007431 5.7e-17 93.2 52 86.5
Thecc.07G113800 Theobroma cacao HOM05D000718 ORTHO05D007431 2.6e-14 84.3 63 63.5
Lsat_1_v5_gn_9_99920 Lactuca sativa HOM05D000718 ORTHO05D007431 7.7e-06 56.2 43 67.4


User provided reference genes

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