Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G4254 Fragaria x ananassa HOM05D005367 ORTHO05D006328 2.7e-132 475.3 234 100.0
FAN10G3657 Fragaria x ananassa HOM05D005367 ORTHO05D006328 2.9e-118 428.7 230 93.9
FvH4_7g29600 Fragaria vesca HOM05D005367 ORTHO05D006328 7.5e-111 404.1 213 93.9
FAN03G1577 Fragaria x ananassa HOM05D005367 ORTHO05D006328 9.2e-109 397.1 240 83.8
FAN06G3705 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.2e-95 353.6 213 84.5
FAN06G4288 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.2e-95 353.6 213 84.5
RcHm_v2.0_Chr1g0377581 Rosa chinensis HOM05D005367 ORTHO05D006328 3.0e-83 312.4 223 71.7
MD01G1202200 Malus domestica HOM05D005367 ORTHO05D006328 2.2e-41 173.3 239 49.0
Ciclev10021865m.g Citrus clementina HOM05D005367 ORTHO05D006328 7.7e-31 138.3 213 41.8
COL.COLO4_12698 Corchorus olitorius HOM05D005367 ORTHO05D006328 5.5e-29 132.1 164 44.5
QL09p013904 Quercus lobata HOM05D005367 ORTHO05D006328 1.6e-28 130.6 210 42.4
Dinv43805 Davidia involucrata HOM05D005367 ORTHO05D006328 8.0e-28 128.3 191 41.9
Cpa.g.sc18.245 Carica papaya HOM05D005367 ORTHO05D006328 1.4e-27 127.5 219 39.7
TAR636G2389 Trochodendron aralioides HOM05D003133 ORTHO05D003642 4.0e-27 125.9 222 39.2
Gohir.D08G152300 Gossypium hirsutum HOM05D005367 ORTHO05D006328 5.2e-27 125.6 171 43.3
Nn1g01501 Nelumbo nucifera HOM05D005367 ORTHO05D006328 5.2e-27 125.6 197 40.1
Thecc.01G360700 Theobroma cacao HOM05D005367 ORTHO05D006328 5.2e-27 125.6 170 44.7
Gohir.A08G130800 Gossypium hirsutum HOM05D005367 ORTHO05D006328 8.8e-27 124.8 171 43.3
TWI14G0016 Tripterygium wilfordii HOM05D005367 ORTHO05D006328 1.2e-26 124.4 203 38.4
Duzib133G0249 Durio zibethinus HOM05D005367 ORTHO05D006328 1.5e-26 124.0 172 43.0
Prupe.2G167900 Prunus persica HOM05D005367 ORTHO05D006328 2.6e-26 123.2 214 38.8
GSVIVG01026893001 Vitis vinifera HOM05D005367 ORTHO05D006328 2.6e-26 123.2 164 43.9
Haze_15487 Corylus avellana HOM05D005367 ORTHO05D006328 4.4e-26 122.5 211 36.5
Gorai.004G158200 Gossypium raimondii HOM05D005367 ORTHO05D006328 4.4e-26 122.5 189 40.7
ClCG06G003800 Citrullus lanatus HOM05D005367 ORTHO05D006328 7.5e-26 121.7 198 35.9
Manes.06G148200 Manihot esculenta HOM05D005367 ORTHO05D006328 7.5e-26 121.7 167 43.1
Cc02_g37850 Coffea canephora HOM05D005367 ORTHO05D006328 9.7e-26 121.3 200 35.5
Atru.chr5.466 Acer truncatum HOM05D005367 ORTHO05D006328 1.7e-25 120.6 164 43.3
Prupe.2G295600 Prunus persica HOM05D005367 ORTHO05D006328 3.7e-25 119.4 119 54.6
Atru.chr1.441 Acer truncatum HOM05D005367 ORTHO05D006328 4.8e-25 119.0 172 43.0
Gohir.A11G088100 Gossypium hirsutum HOM05D005367 ORTHO05D006328 4.8e-25 119.0 171 41.5
MD01G1057500 Malus domestica HOM05D005367 ORTHO05D006328 4.8e-25 119.0 210 36.2
MD07G1139200 Malus domestica HOM05D005367 ORTHO05D006328 4.8e-25 119.0 209 37.3
RcHm_v2.0_Chr1g0355051 Rosa chinensis HOM05D005367 ORTHO05D006328 4.8e-25 119.0 188 37.8
Cfa003939 Carpinus fangiana HOM05D005367 ORTHO05D006328 6.3e-25 118.6 220 35.5
Potri.014G082600 Populus trichocarpa HOM05D005367 ORTHO05D006328 1.4e-24 117.5 171 39.2
Gorai.007G098700 Gossypium raimondii HOM05D005367 ORTHO05D006328 1.8e-24 117.1 226 38.1
MSTRG.20826 Avicennia marina HOM05D005367 ORTHO05D006328 2.4e-24 116.7 175 40.0
Glyma.18G231900 Glycine max HOM05D005367 ORTHO05D006328 2.4e-24 116.7 191 37.7
QL08p049031 Quercus lobata HOM05D005367 ORTHO05D006328 2.4e-24 116.7 170 39.4
CSS0033809 Camellia sinensis var. sinensis HOM05D005367 ORTHO05D006328 3.1e-24 116.3 174 42.5
Gohir.D11G092400 Gossypium hirsutum HOM05D005367 ORTHO05D006328 3.1e-24 116.3 226 38.1
Nn6g33454 Nelumbo nucifera HOM05D005367 ORTHO05D006328 3.1e-24 116.3 220 35.5
TAR375G0799 Trochodendron aralioides HOM05D005367 ORTHO05D006328 3.1e-24 116.3 209 38.8
CiPaw.02G029900 Carya illinoinensis HOM05D005367 ORTHO05D006328 5.3e-24 115.5 177 39.5
Potri.002G158500 Populus trichocarpa HOM05D005367 ORTHO05D006328 5.3e-24 115.5 168 39.3
CANSAT56G3377 Cannabis sativa HOM05D005367 ORTHO05D006328 9.1e-24 114.8 184 37.0
Duzib205G1257 Durio zibethinus HOM05D005367 ORTHO05D006328 1.2e-23 114.4 185 37.8
Hma1.2p1_0001F.1_g001380 Hydrangea macrophylla HOM05D005367 ORTHO05D006328 1.2e-23 114.4 198 38.4
FAN10G0042 Fragaria x ananassa HOM05D005367 ORTHO05D006328 2.7e-23 113.2 202 38.6
FvH4_7g14150 Fragaria vesca HOM05D005367 ORTHO05D006328 3.5e-23 112.8 210 38.1
FAN06G0563 Fragaria x ananassa HOM05D005367 ORTHO05D006328 4.5e-23 112.5 210 38.1
Atru.chr1.440 Acer truncatum HOM05D005367 ORTHO05D006328 5.9e-23 112.1 214 36.4
Oeu056369.1 Olea europaea HOM05D005367 ORTHO05D006328 5.9e-23 112.1 172 41.3
Sed0017642 Sechium edule HOM05D005367 ORTHO05D006328 5.9e-23 112.1 166 38.6
Migut.B01742 Erythranthe guttata HOM05D005367 ORTHO05D006328 7.7e-23 111.7 169 37.9
FAN01G2456 Fragaria x ananassa HOM05D005367 ORTHO05D006328 7.7e-23 111.7 203 37.9
MELO3C021217.2 Cucumis melo HOM05D005367 ORTHO05D006328 1.0e-22 111.3 214 33.2
Nitab4.5_0001702g0150 Nicotiana tabacum HOM05D005367 ORTHO05D006328 1.0e-22 111.3 171 38.0
HanXRQChr16g0522831 Helianthus annuus HOM05D005367 ORTHO05D006328 1.3e-22 110.9 168 40.5
CSS0040093 Camellia sinensis var. sinensis HOM05D005367 ORTHO05D006328 1.7e-22 110.5 205 38.0
Lj1g0004821 Lotus japonicus HOM05D005367 ORTHO05D006328 1.7e-22 110.5 205 36.6
SalBow3G2019 Salvia bowleyana HOM05D005367 ORTHO05D006328 1.7e-22 110.5 158 40.5
Ciclev10006075m.g Citrus clementina HOM05D005367 ORTHO05D006328 2.9e-22 109.8 163 41.1
FAN03G1221 Fragaria x ananassa HOM05D005367 ORTHO05D006328 2.9e-22 109.8 202 38.1
Manes.01G258500 Manihot esculenta HOM05D005367 ORTHO05D006328 3.8e-22 109.4 152 40.1
Actinidia20916 Actinidia chinensis HOM05D005367 ORTHO05D006328 5.0e-22 109.0 167 41.3
Nitab4.5_0008050g0010 Nicotiana tabacum HOM05D005367 ORTHO05D006328 5.0e-22 109.0 189 34.9
Lalb_Chr24g0401631 Lupinus albus HOM05D005367 ORTHO05D006328 6.5e-22 108.6 165 38.2
CsaV3_6G000470 Cucumis sativus L. HOM05D005367 ORTHO05D006328 8.5e-22 108.2 207 32.9
PSO478G0766 Papaver somniferum HOM05D005367 ORTHO05D006328 1.1e-21 107.8 220 35.5
Sc01g0003360 Simmondsia chinensis HOM05D005367 ORTHO05D006328 1.1e-21 107.8 174 39.1
vmacro13291 Vaccinium macrocarpon HOM05D005367 ORTHO05D006328 1.1e-21 107.8 171 39.8
Lalb_Chr01g0011531 Lupinus albus HOM05D005367 ORTHO05D006328 1.9e-21 107.1 165 37.6
Manes.05G036200 Manihot esculenta HOM05D005367 ORTHO05D006328 1.9e-21 107.1 184 38.0
RcHm_v2.0_Chr1g0354801 Rosa chinensis HOM05D005367 ORTHO05D006328 3.2e-21 106.3 189 36.0
Aqoxy7G00339 Aquilegia oxysepala HOM05D005367 ORTHO05D006328 5.5e-21 105.5 163 36.8
COL.COLO4_14330 Corchorus olitorius HOM05D005367 ORTHO05D006328 9.4e-21 104.8 190 35.8
Ca_07909_v3 Cicer arietinum L. HOM05D005367 ORTHO05D006328 1.2e-20 104.4 182 35.7
Solyc05g049880.3 Solanum lycopersicum HOM05D005367 ORTHO05D006328 1.2e-20 104.4 202 36.1
Sopen05g028210 Solanum pennellii HOM05D005367 ORTHO05D006328 1.6e-20 104.0 218 34.4
PGR031G3282 Punica granatum HOM05D005367 ORTHO05D006328 2.1e-20 103.6 169 37.3
Lj9A582T87 Lonicera japonica HOM05D005367 ORTHO05D006328 2.7e-20 103.2 215 34.9
SGA_v2.0_scaffold11G05663 Striga asiatica HOM05D000368 ORTHO05D006328 2.7e-20 103.2 175 39.4
DCAR_010300 Daucus carota HOM05D005367 ORTHO05D006328 3.6e-20 102.8 180 36.7
vmacro06668 Vaccinium macrocarpon HOM05D005367 ORTHO05D006328 3.6e-20 102.8 201 36.8
Eucgr.D02282 Eucalyptus grandis HOM05D005367 ORTHO05D006328 4.7e-20 102.4 216 33.8
TWI59G0064 Tripterygium wilfordii HOM05D005367 ORTHO05D006328 4.7e-20 102.4 162 38.3
PSO782G1827 Papaver somniferum HOM05D005367 ORTHO05D006328 6.1e-20 102.1 215 34.9
Eucgr.E00158 Eucalyptus grandis HOM05D005367 ORTHO05D006328 1.8e-19 100.5 167 36.5
Lsat_1_v5_gn_4_36280 Lactuca sativa HOM05D005367 ORTHO05D006328 1.8e-19 100.5 167 38.3
THA.LOC104801446 Tarenaya hassleriana HOM05D005367 ORTHO05D006328 1.8e-19 100.5 165 37.6
Peaxi162Scf00191g01425 Petunia axillaris HOM05D005367 ORTHO05D006328 2.3e-19 100.1 168 36.9
Phvul.008G065800 Phaseolus vulgaris HOM05D005367 ORTHO05D006328 2.3e-19 100.1 164 36.6
Hund16930 Selenicereus undatus HOM05D005367 ORTHO05D006328 2.3e-19 100.1 215 33.0
PGR042G0868 Punica granatum HOM05D005367 ORTHO05D006328 3.0e-19 99.8 157 40.1
PGSC0003DMG400021656 Solanum tuberosum HOM05D005367 ORTHO05D006328 3.0e-19 99.8 197 34.0
ECA234G3275 Erigeron canadensis HOM05D005367 ORTHO05D006328 4.0e-19 99.4 185 37.8
arahy.Tifrunner.gnm1.ann1.D8DQXR Arachis hypogaea HOM05D005367 ORTHO05D006328 5.2e-19 99.0 179 34.1
VMungo1383G2792 Vigna mungo HOM05D005367 ORTHO05D006328 5.2e-19 99.0 167 35.9
arahy.Tifrunner.gnm1.ann1.G5US7K Arachis hypogaea HOM05D005367 ORTHO05D006328 8.8e-19 98.2 179 34.1
EL10Ac1g00429 Beta vulgaris HOM05D005367 ORTHO05D006328 8.8e-19 98.2 204 33.8
unitig_61.g26388 Utricularia gibba HOM05D005367 ORTHO05D006328 8.8e-19 98.2 177 37.3
HPP92_027620 Vanilla planifolia HOM05D005367 ORTHO05D006328 7.5e-18 95.1 169 33.1
TPR.G37815 Trifolium pratense HOM05D005367 ORTHO05D006328 9.8e-18 94.7 183 32.8
HPP92_022052 Vanilla planifolia HOM05D005367 ORTHO05D006328 9.8e-18 94.7 169 33.1
Sp1g00570 Schrenkiella parvula HOM05D005367 ORTHO05D006328 2.2e-17 93.6 166 33.7
AUR62004342 Chenopodium quinoa HOM05D005367 ORTHO05D006328 4.8e-17 92.4 146 37.7
VMungo1383G2823 Vigna mungo HOM05D005367 ORTHO05D006328 8.3e-17 91.7 179 31.8
Ah.05g180710 Amaranthus hybridus HOM05D005367 ORTHO05D006328 1.8e-16 90.5 204 34.3
Psat3g109400 Pisum sativum HOM05D005367 ORTHO05D006328 9.1e-16 88.2 190 31.6
Carub.0001s0048 Capsella rubella HOM05D005367 ORTHO05D006328 1.6e-15 87.4 164 32.3
C08p53830 Brassica napus HOM05D006991 ORTHO05D009188 2.0e-15 87.0 164 34.1
BolC8t52897H Brassica oleracea HOM05D000368 ORTHO05D000289 2.0e-15 87.0 164 34.1
Medtr7g077380 Medicago truncatula HOM05D005367 ORTHO05D006328 2.7e-15 86.7 181 34.3
BraA09t42260Z Brassica rapa HOM05D005367 ORTHO05D006328 4.5e-15 85.9 164 32.9
Actinidia34119 Actinidia chinensis HOM05D005367 ORTHO05D006328 1.7e-14 84.0 176 35.8
AL1G10610 Arabidopsis lyrata HOM05D005367 ORTHO05D006328 2.3e-14 83.6 223 28.3
Rhsim03G0187100 Rhododendron simsii HOM05D005367 ORTHO05D006328 8.6e-14 81.6 232 32.8
Thhalv10008538m.g Eutrema salsugineum HOM05D005367 ORTHO05D006328 1.1e-13 81.3 188 30.9
Potri.015G145000 Populus trichocarpa HOM05D005367 ORTHO05D006328 3.2e-13 79.7 133 36.1
FAN28G3009 Fragaria x ananassa HOM05D005367 ORTHO05D006328 9.5e-13 78.2 114 44.7
AT1G01730 Arabidopsis thaliana HOM05D005367 ORTHO05D006328 2.8e-12 76.6 202 30.7
Dinv35219 Davidia involucrata HOM05D005367 ORTHO05D006328 4.7e-12 75.9 145 40.0
FAN10G0871 Fragaria x ananassa HOM05D005367 ORTHO05D006328 6.1e-12 75.5 155 36.8
FAN10G2377 Fragaria x ananassa HOM05D005367 ORTHO05D006328 8.0e-12 75.1 99 48.5
FAN10G3879 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.0e-11 74.7 141 36.2
MBI17_g24635_MAGBIO Magnolia biondii HOM05D005367 ORTHO05D006328 2.0e-10 70.5 201 24.4
Sabra14G0059900 Salix brachista HOM05D005367 ORTHO05D006328 2.2e-09 67.0 224 28.1
DCAR_000242 Daucus carota HOM05D005367 ORTHO05D006328 1.6e-07 60.8 116 33.6
AUR62022543 Chenopodium quinoa HOM05D000713 ORTHO05D000547 3.5e-07 59.7 81 39.5
Aa31LG1G11100 Aethionema arabicum HOM05D005367 ORTHO05D006328 7.8e-07 58.5 50 52.0
AUR62022549 Chenopodium quinoa HOM05D005367 ORTHO05D006328 2.3e-06 57.0 45 55.6
FAN10G1555 Fragaria x ananassa HOM05D005367 ORTHO05D006328 2.9e-06 56.6 118 33.1
Os04g0556900 Oryza sativa ssp. japonica HOM05D005367 ORTHO05D006328 3.8e-06 56.2 178 29.2


User provided reference genes

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