Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G4236 Fragaria x ananassa HOM05D005488 ORTHO05D006568 4.9e-70 267.7 136 100.0
FAN10G0732 Fragaria x ananassa HOM05D005488 ORTHO05D006568 3.2e-69 265.0 136 98.5
FAN03G1834 Fragaria x ananassa HOM05D005488 ORTHO05D006568 9.2e-69 263.5 136 98.5
FAN01G0908 Fragaria x ananassa HOM05D005488 ORTHO05D006568 3.5e-68 261.5 136 97.1
FvH4_7g08830 Fragaria vesca HOM05D005488 ORTHO05D006568 2.3e-67 258.8 136 97.1
FAN06G3564 Fragaria x ananassa HOM05D005488 ORTHO05D006568 2.3e-67 258.8 136 97.1
RcHm_v2.0_Chr1g0344251 Rosa chinensis HOM05D005488 ORTHO05D006568 2.0e-63 245.7 136 91.9
Prupe.2G116500 Prunus persica HOM05D005488 ORTHO05D006568 6.4e-62 240.7 136 86.8
MD07G1091300 Malus domestica HOM05D005488 ORTHO05D006568 1.2e-57 226.5 137 83.9
MD02G1223400 Malus domestica HOM05D005488 ORTHO05D006568 5.2e-56 221.1 137 83.9
Cfa011024 Carpinus fangiana HOM05D005488 ORTHO05D006568 1.1e-53 213.4 136 80.1
CANSAT25G0013 Cannabis sativa HOM05D005488 ORTHO05D006568 5.4e-53 211.1 138 77.5
CiPaw.14G016900 Carya illinoinensis HOM05D005488 ORTHO05D006568 9.3e-53 210.3 136 77.2
Haze_02901 Corylus avellana HOM05D005488 ORTHO05D006568 1.6e-52 209.5 133 79.7
CiPaw.13G022100 Carya illinoinensis HOM05D005488 ORTHO05D006568 3.5e-52 208.4 136 80.1
GSVIVG01018352001 Vitis vinifera HOM05D005488 ORTHO05D006568 5.1e-51 204.5 137 77.4
Manes.05G058400 Manihot esculenta HOM05D005488 ORTHO05D006568 1.1e-50 203.4 136 76.5
AUR62013788 Chenopodium quinoa HOM05D005488 ORTHO05D006568 3.3e-50 201.8 138 75.4
Solyc01g088610.4 Solanum lycopersicum HOM05D005488 ORTHO05D006568 5.6e-50 201.1 137 77.4
PGSC0003DMG400001718 Solanum tuberosum HOM05D005488 ORTHO05D006568 5.6e-50 201.1 137 77.4
Sopen01g035460 Solanum pennellii HOM05D005488 ORTHO05D006568 9.6e-50 200.3 137 76.6
Oeu012019.1 Olea europaea HOM05D002442 ORTHO05D006568 1.3e-49 199.9 137 76.6
Potri.014G044300 Populus trichocarpa HOM05D005488 ORTHO05D006568 8.1e-49 197.2 139 74.8
Sc26g0001760 Simmondsia chinensis HOM05D005488 ORTHO05D006568 8.1e-49 197.2 138 76.8
CAN.G756.18 Capsicum annuum HOM05D005488 ORTHO05D006568 1.8e-48 196.1 137 75.2
AUR62023368 Chenopodium quinoa HOM05D005488 ORTHO05D006568 1.8e-48 196.1 138 73.2
Nn6g33696 Nelumbo nucifera HOM05D005488 ORTHO05D006568 1.8e-48 196.1 137 73.7
Nitab4.5_0004088g0020 Nicotiana tabacum HOM05D005488 ORTHO05D006568 1.8e-48 196.1 137 74.5
Nitab4.5_0005064g0040 Nicotiana tabacum HOM05D005488 ORTHO05D006568 1.8e-48 196.1 137 74.5
Oeu034855.1 Olea europaea HOM05D005488 ORTHO05D006568 6.9e-48 194.1 137 75.9
EL10Ac1g00715 Beta vulgaris HOM05D005488 ORTHO05D006568 9.0e-48 193.7 138 76.1
Atru.chr5.44 Acer truncatum HOM05D005488 ORTHO05D006568 2.0e-47 192.6 137 72.3
Atru.chr5.75 Acer truncatum HOM05D005488 ORTHO05D006568 3.4e-47 191.8 137 72.3
Hund17125 Selenicereus undatus HOM05D005488 ORTHO05D006568 4.5e-47 191.4 135 71.9
Gohir.A08G140700 Gossypium hirsutum HOM05D005488 ORTHO05D006568 5.8e-47 191.0 136 71.3
Lj3g0015162 Lotus japonicus HOM05D005488 ORTHO05D006568 5.8e-47 191.0 140 69.3
Gorai.004G168100 Gossypium raimondii HOM05D005488 ORTHO05D006568 1.3e-46 189.9 137 73.0
Gohir.D08G161700 Gossypium hirsutum HOM05D005488 ORTHO05D006568 2.2e-46 189.1 137 73.0
PGR042G2970 Punica granatum HOM05D005488 ORTHO05D006568 2.2e-46 189.1 137 73.7
arahy.Tifrunner.gnm1.ann1.L23YUH Arachis hypogaea HOM05D005488 ORTHO05D006568 2.9e-46 188.7 138 71.7
CSS0036750 Camellia sinensis var. sinensis HOM05D005488 ORTHO05D006568 2.9e-46 188.7 138 73.2
Psat0s4427g0080 Pisum sativum HOM05D005488 ORTHO05D006568 2.9e-46 188.7 136 69.1
Medtr8g009280 Medicago truncatula HOM05D005488 ORTHO05D006568 4.9e-46 188.0 137 70.8
Actinidia21613 Actinidia chinensis HOM05D005488 ORTHO05D006568 6.4e-46 187.6 139 72.7
TWI23G0236 Tripterygium wilfordii HOM05D005488 ORTHO05D006568 6.4e-46 187.6 138 73.9
DCAR_025027 Daucus carota HOM05D005488 ORTHO05D006568 8.4e-46 187.2 138 70.3
arahy.Tifrunner.gnm1.ann1.LT98XL Arachis hypogaea HOM05D005488 ORTHO05D006568 1.1e-45 186.8 138 71.0
Glyma.03G103600 Glycine max HOM05D005488 ORTHO05D006568 1.1e-45 186.8 136 68.4
AL5G42420 Arabidopsis lyrata HOM05D005488 ORTHO05D006568 1.4e-45 186.4 139 67.6
MSTRG.17108 Avicennia marina HOM05D005488 ORTHO05D006568 1.4e-45 186.4 137 70.1
Ciclev10022799m.g Citrus clementina HOM05D005488 ORTHO05D006568 1.4e-45 186.4 138 71.7
Cc02_g25610 Coffea canephora HOM05D005488 ORTHO05D006568 2.4e-45 185.7 142 70.4
COL.COLO4_12353 Corchorus olitorius HOM05D005488 ORTHO05D006568 2.4e-45 185.7 137 70.8
Thecc.01G402400 Theobroma cacao HOM05D005488 ORTHO05D006568 2.4e-45 185.7 137 70.8
TWI14G1396 Tripterygium wilfordii HOM05D005488 ORTHO05D006568 2.4e-45 185.7 137 69.3
Ca_23141_v3 Cicer arietinum L. HOM05D005488 ORTHO05D006568 3.2e-45 185.3 137 66.4
Lalb_Chr19g0126481 Lupinus albus HOM05D005488 ORTHO05D006568 3.2e-45 185.3 139 70.5
Peaxi162Scf00745g00015 Petunia axillaris HOM05D005488 ORTHO05D006568 3.2e-45 185.3 143 69.2
Phvul.010G041700 Phaseolus vulgaris HOM05D005488 ORTHO05D006568 4.2e-45 184.9 136 67.6
Eucgr.D01184 Eucalyptus grandis HOM05D005488 ORTHO05D006568 7.1e-45 184.1 137 71.5
unitig_26.g8858 Utricularia gibba HOM05D005488 ORTHO05D006568 7.1e-45 184.1 136 66.2
Aqoxy3G02564 Aquilegia oxysepala HOM05D005488 ORTHO05D006568 1.2e-44 183.3 137 72.3
Lalb_Chr03g0040501 Lupinus albus HOM05D005488 ORTHO05D006568 1.2e-44 183.3 136 69.9
Aa31LG1G26190 Aethionema arabicum HOM05D005488 ORTHO05D006568 2.1e-44 182.6 139 66.9
AT3G60210 Arabidopsis thaliana HOM05D005488 ORTHO05D006568 2.7e-44 182.2 140 67.1
Carub.0005s2695 Capsella rubella HOM05D005488 ORTHO05D006568 2.7e-44 182.2 139 67.6
Cpa.g.sc52.71 Carica papaya HOM05D005488 ORTHO05D006568 3.5e-44 181.8 115 80.9
ClCG05G002900 Citrullus lanatus HOM05D005488 ORTHO05D006568 3.5e-44 181.8 139 68.3
PSO063G2958 Papaver somniferum HOM05D005488 ORTHO05D006568 3.5e-44 181.8 137 68.6
HanXRQChr16g0522961 Helianthus annuus HOM05D005488 ORTHO05D006568 4.6e-44 181.4 141 68.1
PSO782G2409 Papaver somniferum HOM05D005488 ORTHO05D006568 4.6e-44 181.4 137 68.6
SGA_v2.0_scaffold52G19266 Striga asiatica HOM05D005488 ORTHO05D006568 6.0e-44 181.0 137 70.8
MELO3C006268.2 Cucumis melo HOM05D005488 ORTHO05D006568 7.9e-44 180.6 140 67.9
THA.LOC104827584 Tarenaya hassleriana HOM05D005488 ORTHO05D006568 3.9e-43 178.3 138 66.7
Lsat_1_v5_gn_4_38520 Lactuca sativa HOM05D005488 ORTHO05D006568 5.1e-43 177.9 138 67.4
CsaV3_3G010440 Cucumis sativus L. HOM05D005488 ORTHO05D006568 6.7e-43 177.6 140 65.7
ECA234G4156 Erigeron canadensis HOM05D005488 ORTHO05D006568 1.5e-42 176.4 140 66.4
SalBow5G2779 Salvia bowleyana HOM05D005488 ORTHO05D006568 1.5e-42 176.4 137 68.6
Duzib138G1174 Durio zibethinus HOM05D005488 ORTHO05D006568 1.9e-42 176.0 137 67.2
CSS0010758 Camellia sinensis var. sinensis HOM05D005488 ORTHO05D006568 4.3e-42 174.9 139 69.1
AL4G43700 Arabidopsis lyrata HOM05D005488 ORTHO05D006568 9.6e-42 173.7 140 66.4
CDE12G0168 Ceratophyllum demersum HOM05D005488 ORTHO05D006568 9.6e-42 173.7 143 62.2
ClCG06G000860 Citrullus lanatus HOM05D005488 ORTHO05D006568 1.3e-41 173.3 136 68.4
ATR0665G403 Amborella trichopoda HOM05D005488 ORTHO05D006568 2.1e-41 172.6 106 77.4
BcaB02g08840 Brassica carinata HOM05D005488 ORTHO05D006568 3.7e-41 171.8 139 66.2
Carub.0004s2720 Capsella rubella HOM05D005488 ORTHO05D006568 3.7e-41 171.8 140 65.0
Migut.N01716 Erythranthe guttata HOM05D005488 ORTHO05D006568 4.8e-41 171.4 137 66.4
VMungo0331G0633 Vigna mungo HOM05D005488 ORTHO05D006568 4.8e-41 171.4 131 64.1
AT2G44650 Arabidopsis thaliana HOM05D005488 ORTHO05D006568 6.2e-41 171.0 141 66.0
Thhalv10001677m.g Eutrema salsugineum HOM05D005488 ORTHO05D006568 6.2e-41 171.0 140 65.0
CSS0012976 Camellia sinensis var. sinensis HOM05D005488 ORTHO05D006568 8.1e-41 170.6 141 67.4
Migut.B01488 Erythranthe guttata HOM05D005488 ORTHO05D006568 1.1e-40 170.2 137 67.9
Sp4g26730 Schrenkiella parvula HOM05D005488 ORTHO05D006568 1.8e-40 169.5 140 65.0
Sed0025787 Sechium edule HOM05D005488 ORTHO05D006568 2.4e-40 169.1 139 63.3
BolC4t28620H Brassica oleracea HOM05D005488 ORTHO05D006568 4.0e-40 168.3 139 64.7
BcaC02g12287 Brassica carinata HOM05D005488 ORTHO05D006568 5.3e-40 167.9 138 65.2
C04p05600 Brassica napus HOM05D005488 ORTHO05D006568 5.3e-40 167.9 138 65.2
BolC4t22190H Brassica oleracea HOM05D005488 ORTHO05D006568 5.3e-40 167.9 138 65.2
BraA05t19455Z Brassica rapa HOM05D005488 ORTHO05D006568 5.3e-40 167.9 138 65.2
Os10g0566700 Oryza sativa ssp. japonica HOM05D005488 ORTHO05D006568 9.0e-40 167.2 104 78.8
Sed0000336 Sechium edule HOM05D005488 ORTHO05D006568 1.5e-39 166.4 136 64.7
A05p04790 Brassica napus HOM05D005488 ORTHO05D006568 2.6e-39 165.6 138 63.8
CDE04G3246 Ceratophyllum demersum HOM05D005488 ORTHO05D006568 4.5e-39 164.9 136 62.5
BcaC02g07105 Brassica carinata HOM05D005488 ORTHO05D006568 5.8e-39 164.5 139 64.0
TPR.G17350 Trifolium pratense HOM05D005488 ORTHO05D006568 9.9e-39 163.7 108 73.1
BraA04t18803Z Brassica rapa HOM05D005488 ORTHO05D006568 1.3e-38 163.3 139 64.0
CARHR139860 Cardamine hirsuta HOM05D005488 ORTHO05D006568 1.7e-38 162.9 140 63.6
Zm00001eb390720 Zea mays HOM05D005488 ORTHO05D006568 2.2e-38 162.5 106 76.4
Zm00001eb024030 Zea mays HOM05D005488 ORTHO05D006568 1.9e-37 159.5 107 75.7
MELO3C022455.2 Cucumis melo HOM05D005488 ORTHO05D006568 3.2e-37 158.7 155 60.0
CsaV3_6G006710 Cucumis sativus L. HOM05D005488 ORTHO05D001261 5.5e-37 157.9 126 67.5
BcaB06g29391 Brassica carinata HOM05D005488 ORTHO05D006568 9.3e-37 157.1 131 64.1
unitig_750.g28406 Utricularia gibba HOM05D005488 ORTHO05D006568 2.7e-36 155.6 137 60.6
Sabra02G0105500 Salix brachista HOM05D005488 ORTHO05D006568 3.5e-36 155.2 209 46.9
Dinv44023 Davidia involucrata HOM05D005488 ORTHO05D006568 7.9e-36 154.1 90 84.4
Potri.002G135700 Populus trichocarpa HOM05D005488 ORTHO05D006568 1.0e-35 153.7 100 75.0
vmacro21078 Vaccinium macrocarpon HOM05D005488 ORTHO05D006568 5.1e-35 151.4 170 53.5
Rhsim01G0143400 Rhododendron simsii HOM05D005488 ORTHO05D006568 9.6e-34 147.1 116 68.1
C04p71170 Brassica napus HOM05D005488 ORTHO05D006568 3.7e-33 145.2 145 57.9
A04p33420 Brassica napus HOM05D005488 ORTHO05D006568 8.2e-33 144.1 139 58.3
SEGI_24977 Sequoiadendron giganteum HOM05D005488 ORTHO05D006568 7.6e-31 137.5 133 55.6
HPP92_025708 Vanilla planifolia HOM05D005488 ORTHO05D006568 4.9e-30 134.8 89 70.8
MD13G1240800 Malus domestica HOM05D005488 ORTHO05D006568 1.1e-29 133.7 107 69.2
SMO244G0054 Selaginella moellendorffii HOM05D005488 ORTHO05D006568 1.4e-29 133.3 89 69.7
AagrBONN_evm.TU.Sc2ySwM_117.3656 Anthoceros agrestis HOM05D005488 ORTHO05D006568 2.5e-29 132.5 130 50.8
Sabra14G0032200 Salix brachista HOM05D005488 ORTHO05D006568 3.5e-28 128.6 144 52.1
QL04p026246 Quercus lobata HOM05D005488 ORTHO05D006568 1.3e-27 126.7 70 84.3
Dinv43589 Davidia involucrata HOM05D005488 ORTHO05D006568 6.7e-27 124.4 89 79.8
Duzib133G1397 Durio zibethinus HOM05D005488 ORTHO05D006568 6.7e-27 124.4 108 63.9
Mapoly0181s0002 Marchantia polymorpha HOM05D005488 ORTHO05D006568 3.3e-26 122.1 119 56.3
Zm00001eb071630 Zea mays HOM05D005488 ORTHO05D006568 4.3e-26 121.7 107 62.6
Pp3c2_19170 Physcomitrium patens HOM05D005488 ORTHO05D006568 6.3e-25 117.9 89 58.4
Glyma.07G120400 Glycine max HOM05D005488 ORTHO05D006568 3.4e-23 112.1 87 65.5
Pp3c1_20880 Physcomitrium patens HOM05D005488 ORTHO05D006568 1.1e-21 107.1 89 53.9
Gohir.D07G176200 Gossypium hirsutum HOM05D005488 ORTHO05D006568 1.4e-21 106.7 74 70.3
Phvul.006G055900 Phaseolus vulgaris HOM05D005488 ORTHO05D006568 8.8e-19 97.4 93 58.1
QL04p026254 Quercus lobata HOM05D005488 ORTHO05D006568 2.4e-16 89.4 69 68.1
Gorai.007G266500 Gossypium raimondii HOM05D005488 ORTHO05D006568 3.1e-16 89.0 65 66.2
Rhsim03G0098500 Rhododendron simsii HOM05D005488 ORTHO05D006568 3.3e-10 68.9 51 72.5
MD00G1150500 Malus domestica HOM05D005488 ORTHO05D006568 2.8e-09 65.9 36 86.1
EL10Ac8g19011 Beta vulgaris HOM05D002686 ORTHO05D003222 8.5e-06 54.3 98 31.6
SEGI_38857 Sequoiadendron giganteum HOM05D002686 ORTHO05D003222 8.5e-06 54.3 117 33.3


User provided reference genes

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