Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G4235 Fragaria x ananassa HOM05D030717 ORTHO05D046157 1.7e-61 239.2 124 100.0
FvH4_7g00710 Fragaria vesca HOM05D005699 ORTHO05D046157 1.5e-38 162.9 122 75.4
FAN19G1439 Fragaria x ananassa HOM05D030717 ORTHO05D203322 3.8e-29 131.7 79 89.9
FAN06G4357 Fragaria x ananassa HOM05D023873 ORTHO05D007496 3.3e-25 118.6 98 67.3
FAN24G0098 Fragaria x ananassa HOM05D030717 ORTHO05D203704 5.7e-25 117.9 82 80.5
FAN22G0393 Fragaria x ananassa HOM05D023873 ORTHO05D201286 6.5e-21 104.4 103 61.2
Atru.chr2.2008 Acer truncatum HOM05D005699 ORTHO05D007496 3.6e-11 72.0 48 62.5
PSO541G1284 Papaver somniferum HOM05D005699 ORTHO05D007496 4.7e-11 71.6 94 42.6
COL.COLO4_17478 Corchorus olitorius HOM05D005699 ORTHO05D007496 6.1e-11 71.2 94 40.4
Thecc.07G132200 Theobroma cacao HOM05D005699 ORTHO05D007496 8.0e-11 70.9 94 40.4
ECA240G3195 Erigeron canadensis HOM05D005699 ORTHO05D007496 1.8e-10 69.7 48 60.4
FAN27G0413 Fragaria x ananassa HOM05D023873 ORTHO05D205818 1.8e-10 69.7 113 43.4
Prupe.4G156800 Prunus persica HOM05D005699 ORTHO05D007496 1.8e-10 69.7 94 41.5
SGA_v2.0_scaffold73G24389 Striga asiatica HOM05D005699 ORTHO05D007496 2.3e-10 69.3 94 41.5
Gohir.A11G289100 Gossypium hirsutum HOM05D005699 ORTHO05D007496 3.0e-10 68.9 94 40.4
MSTRG.6687 Avicennia marina HOM05D005699 ORTHO05D007496 4.0e-10 68.6 71 47.9
Gohir.D11G303400 Gossypium hirsutum HOM05D005699 ORTHO05D007496 4.0e-10 68.6 94 39.4
Gorai.007G331300 Gossypium raimondii HOM05D005699 ORTHO05D007496 4.0e-10 68.6 94 39.4
Migut.M00694 Erythranthe guttata HOM05D005699 ORTHO05D007496 5.2e-10 68.2 94 39.4
Hma1.2p1_0050F.1_g028840 Hydrangea macrophylla HOM05D005699 ORTHO05D007496 5.2e-10 68.2 71 47.9
Hma1.2p1_0050F.1_g028850 Hydrangea macrophylla HOM05D005699 ORTHO05D007496 5.2e-10 68.2 71 47.9
MD11G1269700 Malus domestica HOM05D005699 ORTHO05D007496 5.2e-10 68.2 71 47.9
Nitab4.5_0000347g0060 Nicotiana tabacum HOM05D005699 ORTHO05D007496 5.2e-10 68.2 71 47.9
Lsat_1_v5_gn_9_100441 Lactuca sativa HOM05D005699 ORTHO05D007496 6.8e-10 67.8 94 40.4
Oeu010029.1 Olea europaea HOM05D005699 ORTHO05D007496 6.8e-10 67.8 71 47.9
TAR629G2232 Trochodendron aralioides HOM05D005699 ORTHO05D007496 6.8e-10 67.8 71 46.5
EL10Ac4g08415 Beta vulgaris HOM05D005699 ORTHO05D007496 8.8e-10 67.4 94 39.4
Cfa019514 Carpinus fangiana HOM05D005699 ORTHO05D007496 8.8e-10 67.4 83 42.2
CiPaw.11G155600 Carya illinoinensis HOM05D005699 ORTHO05D007496 8.8e-10 67.4 94 40.4
Haze_09244 Corylus avellana HOM05D005699 ORTHO05D007496 8.8e-10 67.4 83 42.2
Lj8A146G72 Lonicera japonica HOM05D005699 ORTHO05D007496 8.8e-10 67.4 97 40.2
GSVIVG01014100001 Vitis vinifera HOM05D005699 ORTHO05D007496 8.8e-10 67.4 94 40.4
Eucgr.F01366 Eucalyptus grandis HOM05D005699 ORTHO05D007496 1.2e-09 67.0 71 46.5
RcHm_v2.0_Chr5g0029561 Rosa chinensis HOM05D005699 ORTHO05D007496 1.2e-09 67.0 94 41.5
Actinidia12601 Actinidia chinensis HOM05D005699 ORTHO05D007496 1.5e-09 66.6 71 45.1
Actinidia37024 Actinidia chinensis HOM05D005699 ORTHO05D007496 1.5e-09 66.6 71 45.1
Ah.04g164050 Amaranthus hybridus HOM05D005699 ORTHO05D007496 1.5e-09 66.6 94 37.2
Aqoxy1G01911 Aquilegia oxysepala HOM05D005699 ORTHO05D007496 1.5e-09 66.6 94 38.3
HanXRQChr14g0439361 Helianthus annuus HOM05D005699 ORTHO05D007496 1.5e-09 66.6 48 56.2
Lj1A824T64 Lonicera japonica HOM05D005699 ORTHO05D007496 1.5e-09 66.6 99 36.4
MD03G1247900 Malus domestica HOM05D005699 ORTHO05D007496 1.5e-09 66.6 94 40.4
Potri.011G105700 Populus trichocarpa HOM05D005699 ORTHO05D007496 1.5e-09 66.6 94 38.3
TWI39G0441 Tripterygium wilfordii HOM05D005699 ORTHO05D007496 1.5e-09 66.6 71 43.7
CSS0007542 Camellia sinensis var. sinensis HOM05D005699 ORTHO05D007496 2.0e-09 66.2 48 56.2
CSS0028539 Camellia sinensis var. sinensis HOM05D005699 ORTHO05D007496 2.0e-09 66.2 48 56.2
Dinv13365 Davidia involucrata HOM05D005699 ORTHO05D007496 2.0e-09 66.2 48 56.2
FvH4_3g17770 Fragaria vesca HOM05D005699 ORTHO05D007496 2.0e-09 66.2 94 41.5
FAN11G1539 Fragaria x ananassa HOM05D005699 ORTHO05D007496 2.0e-09 66.2 94 41.5
FAN16G3421 Fragaria x ananassa HOM05D005699 ORTHO05D007496 2.0e-09 66.2 94 41.5
Phvul.005G076800 Phaseolus vulgaris HOM05D005699 ORTHO05D007496 2.0e-09 66.2 48 56.2
PGR083G0120 Punica granatum HOM05D005699 ORTHO05D007496 2.0e-09 66.2 48 58.3
Rhsim06G0211500 Rhododendron simsii HOM05D005699 ORTHO05D007496 2.0e-09 66.2 94 39.4
Sc16g0007730 Simmondsia chinensis HOM05D005699 ORTHO05D007496 2.0e-09 66.2 94 39.4
CAN.G375.48 Capsicum annuum HOM05D005699 ORTHO05D007496 2.6e-09 65.9 48 58.3
AUR62019646 Chenopodium quinoa HOM05D005699 ORTHO05D007496 2.6e-09 65.9 94 41.5
DCAR_013779 Daucus carota HOM05D005699 ORTHO05D007496 2.6e-09 65.9 94 40.4
Cpa.g.sc77.58 Carica papaya HOM05D005699 ORTHO05D007496 3.4e-09 65.5 71 43.7
ClCG07G010100 Citrullus lanatus HOM05D005699 ORTHO05D007496 3.4e-09 65.5 60 50.0
HanXRQChr13g0389711 Helianthus annuus HOM05D005699 ORTHO05D007496 3.4e-09 65.5 94 39.4
QL08p037175 Quercus lobata HOM05D005699 ORTHO05D007496 3.4e-09 65.5 101 38.6
QL08p037250 Quercus lobata HOM05D005699 ORTHO05D007496 3.4e-09 65.5 101 38.6
PGSC0003DMG400007091 Solanum tuberosum HOM05D005699 ORTHO05D007496 3.4e-09 65.5 47 57.4
DCAR_019613 Daucus carota HOM05D005699 ORTHO05D007496 4.4e-09 65.1 48 56.2
FAN13G0519 Fragaria x ananassa HOM05D023873 ORTHO05D199550 4.4e-09 65.1 45 77.8
FAN13G2218 Fragaria x ananassa HOM05D023873 ORTHO05D211003 4.4e-09 65.1 45 77.8
FAN25G0494 Fragaria x ananassa HOM05D005699 ORTHO05D007496 4.4e-09 65.1 94 41.5
MBI06_g08519_MAGBIO Magnolia biondii HOM05D005699 ORTHO05D007496 4.4e-09 65.1 48 54.2
THA.LOC104813995 Tarenaya hassleriana HOM05D005699 ORTHO05D007496 4.4e-09 65.1 94 39.4
FAN21G2533 Fragaria x ananassa HOM05D005699 ORTHO05D007496 5.7e-09 64.7 94 40.4
Glyma.12G233800 Glycine max HOM05D005699 ORTHO05D007496 5.7e-09 64.7 48 56.2
AUR62039586 Chenopodium quinoa HOM05D005699 ORTHO05D007496 7.5e-09 64.3 94 39.4
Nitab4.5_0003230g0020 Nicotiana tabacum HOM05D005699 ORTHO05D007496 7.5e-09 64.3 71 45.1
SalBow7G3647 Salvia bowleyana HOM05D005699 ORTHO05D007496 7.5e-09 64.3 83 41.0
Solyc07g062180.4 Solanum lycopersicum HOM05D005699 ORTHO05D007496 7.5e-09 64.3 94 39.4
ATR0213G027 Amborella trichopoda HOM05D005699 ORTHO05D007496 9.8e-09 63.9 71 43.7
Carub.0002s2547 Capsella rubella HOM05D005699 ORTHO05D007496 9.8e-09 63.9 125 33.6
Manes.03G092700 Manihot esculenta HOM05D005699 ORTHO05D007496 9.8e-09 63.9 94 39.4
Nn3g21006 Nelumbo nucifera HOM05D005699 ORTHO05D007496 9.8e-09 63.9 48 56.2
Potri.001G384300 Populus trichocarpa HOM05D005699 ORTHO05D007496 9.8e-09 63.9 126 34.9
AL2G39020 Arabidopsis lyrata HOM05D005699 ORTHO05D007496 1.3e-08 63.5 125 33.6
AT1G78620 Arabidopsis thaliana HOM05D005699 ORTHO05D007496 1.3e-08 63.5 125 33.6
CARHR072140 Cardamine hirsuta HOM05D005699 ORTHO05D007496 1.3e-08 63.5 94 38.3
Lj3g0018973 Lotus japonicus HOM05D005699 ORTHO05D007496 1.3e-08 63.5 48 54.2
unitig_37.g12557 Utricularia gibba HOM05D005699 ORTHO05D007496 1.3e-08 63.5 48 58.3
VMungo1080G0954 Vigna mungo HOM05D005699 ORTHO05D007496 1.3e-08 63.5 94 38.3
CiPaw.12G110500 Carya illinoinensis HOM05D005699 ORTHO05D007496 1.7e-08 63.2 71 45.1
MELO3C016111.2 Cucumis melo HOM05D005699 ORTHO05D007496 2.2e-08 62.8 48 56.2
CsaV3_4G008250 Cucumis sativus L. HOM05D005699 ORTHO05D007496 2.2e-08 62.8 48 56.2
Sed0019309 Sechium edule HOM05D005699 ORTHO05D007496 2.2e-08 62.8 48 54.2
Peaxi162Scf00111g01334 Petunia axillaris HOM05D005699 ORTHO05D007496 2.8e-08 62.4 129 33.3
Sabra11G0074900 Salix brachista HOM05D005699 ORTHO05D007496 2.8e-08 62.4 94 38.3
Sabra11G0080500 Salix brachista HOM05D005699 ORTHO05D007496 2.8e-08 62.4 94 38.3
Sopen07g030460 Solanum pennellii HOM05D005699 ORTHO05D007496 2.8e-08 62.4 41 63.4
TPR.G13095 Trifolium pratense HOM05D005699 ORTHO05D007496 2.8e-08 62.4 94 36.2
vmacro11968 Vaccinium macrocarpon HOM05D005699 ORTHO05D007496 2.8e-08 62.4 74 40.5
CSS0029451 Camellia sinensis var. sinensis HOM05D005699 ORTHO05D007496 3.7e-08 62.0 71 42.3
Ciclev10021126m.g Citrus clementina HOM05D005699 ORTHO05D007496 3.7e-08 62.0 94 38.3
Cc05_g10740 Coffea canephora HOM05D005699 ORTHO05D007496 3.7e-08 62.0 94 38.3
Thhalv10018838m.g Eutrema salsugineum HOM05D005699 ORTHO05D007496 3.7e-08 62.0 94 36.2
Lalb_Chr20g0109131 Lupinus albus HOM05D005699 ORTHO05D007496 3.7e-08 62.0 94 36.2
Medtr2g073380 Medicago truncatula HOM05D005699 ORTHO05D007496 3.7e-08 62.0 111 35.1
Sp5g33710 Schrenkiella parvula HOM05D005699 ORTHO05D007496 3.7e-08 62.0 125 32.0
A07p43890 Brassica napus HOM05D005699 ORTHO05D007496 4.9e-08 61.6 125 32.0
BcaC08g47425 Brassica carinata HOM05D005699 ORTHO05D007496 6.3e-08 61.2 125 32.0
Glyma.13G265200 Glycine max HOM05D005699 ORTHO05D007496 6.3e-08 61.2 94 37.2
Manes.15G097700 Manihot esculenta HOM05D005699 ORTHO05D007496 6.3e-08 61.2 125 33.6
Zm00001eb361870 Zea mays HOM05D005699 ORTHO05D007496 6.3e-08 61.2 97 38.1
MSTRG.14252 Avicennia marina HOM05D005699 ORTHO05D007496 1.1e-07 60.5 125 32.0
C06p52520 Brassica napus HOM05D005699 ORTHO05D007496 1.8e-07 59.7 125 32.0
BolC6t40271H Brassica oleracea HOM05D005699 ORTHO05D007496 1.8e-07 59.7 125 29.6
Aa31LG4G2340 Aethionema arabicum HOM05D005699 ORTHO05D007496 2.4e-07 59.3 125 32.8
BcaC08g47427 Brassica carinata HOM05D005699 ORTHO05D007496 2.4e-07 59.3 125 31.2
SalBow4G2873 Salvia bowleyana HOM05D005699 ORTHO05D007496 2.4e-07 59.3 94 36.2
Ca_03931_v3 Cicer arietinum L. HOM05D005699 ORTHO05D007496 3.1e-07 58.9 94 36.2
FvH4_7g15280 Fragaria vesca HOM05D030717 ORTHO05D196266 3.1e-07 58.9 41 70.7
BraA07t31896Z Brassica rapa HOM05D005699 ORTHO05D007496 4.1e-07 58.5 125 31.2
Os01g0729100 Oryza sativa ssp. japonica HOM05D005699 ORTHO05D007496 5.4e-07 58.2 100 36.0
HPP92_006376 Vanilla planifolia HOM05D005699 ORTHO05D007496 5.4e-07 58.2 102 35.3
AagrBONN_evm.TU.Sc2ySwM_228.4605 Anthoceros agrestis HOM05D005699 ORTHO05D007496 7.0e-07 57.8 48 47.9
Psat5g233280 Pisum sativum HOM05D005699 ORTHO05D007496 7.0e-07 57.8 101 34.7
SEGI_05295 Sequoiadendron giganteum HOM05D005699 ORTHO05D007496 7.0e-07 57.8 61 45.9
arahy.Tifrunner.gnm1.ann1.EKI9R8 Arachis hypogaea HOM05D005699 ORTHO05D007496 3.5e-06 55.5 94 35.1
Medtr7g055620 Medicago truncatula HOM05D005699 ORTHO05D007496 3.5e-06 55.5 55 47.3
SHI27569 Sapria himalayana HOM05D005699 ORTHO05D007496 5.9e-06 54.7 47 55.3


User provided reference genes

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