Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G4221 Fragaria x ananassa HOM05D003422 ORTHO05D004263 1.1e-103 380.2 220 100.0
FAN06G1621 Fragaria x ananassa HOM05D003422 ORTHO05D004263 2.2e-48 196.4 170 70.0
FAN07G0682 Fragaria x ananassa HOM05D003422 ORTHO05D004263 1.7e-43 180.3 162 65.4
FAN22G1899 Fragaria x ananassa HOM05D003422 ORTHO05D004263 9.1e-42 174.5 167 68.3
RcHm_v2.0_Chr4g0433011 Rosa chinensis HOM05D003422 ORTHO05D004263 8.5e-40 167.9 183 60.1
FAN17G2514 Fragaria x ananassa HOM05D003422 ORTHO05D004263 2.1e-38 163.3 167 64.1
FvH4_4g25580 Fragaria vesca HOM05D003422 ORTHO05D004263 3.7e-35 152.5 169 62.7
RcHm_v2.0_Chr7g0190541 Rosa chinensis HOM05D003422 ORTHO05D004263 1.4e-29 134.0 167 59.3
MD11G1214400 Malus domestica HOM05D003422 ORTHO05D004263 4.4e-28 129.0 172 52.3
MD03G1198200 Malus domestica HOM05D003422 ORTHO05D004263 1.7e-27 127.1 170 56.5
TAR622G0502 Trochodendron aralioides HOM05D003422 ORTHO05D004263 2.0e-25 120.2 166 51.8
Prupe.1G244800 Prunus persica HOM05D003422 ORTHO05D004263 3.5e-25 119.4 173 54.3
Atru.chr2.1587 Acer truncatum HOM05D003422 ORTHO05D004263 4.5e-25 119.0 122 59.8
Prupe.8G016700 Prunus persica HOM05D003422 ORTHO05D004263 5.9e-25 118.6 175 54.9
FAN10G4187 Fragaria x ananassa HOM05D003422 ORTHO05D004263 7.8e-25 118.2 65 96.9
Cc11_g15770 Coffea canephora HOM05D003422 ORTHO05D004263 1.0e-24 117.9 162 61.1
ClCG07G015410 Citrullus lanatus HOM05D003422 ORTHO05D004263 1.3e-24 117.5 78 83.3
MELO3C017744.2 Cucumis melo HOM05D003422 ORTHO05D004263 1.3e-24 117.5 78 83.3
CsaV3_4G003000 Cucumis sativus L. HOM05D003422 ORTHO05D004263 1.3e-24 117.5 78 83.3
Sed0010066 Sechium edule HOM05D003422 ORTHO05D004263 1.3e-24 117.5 78 83.3
Atru.chr3.1559 Acer truncatum HOM05D003422 ORTHO05D004263 1.7e-24 117.1 81 80.2
Atru.chr3.1581 Acer truncatum HOM05D003422 ORTHO05D004263 1.7e-24 117.1 81 80.2
Sed0026406 Sechium edule HOM05D003422 ORTHO05D004263 1.7e-24 117.1 173 55.5
Sp5g25830 Schrenkiella parvula HOM05D003422 ORTHO05D004263 2.3e-24 116.7 82 79.3
CSS0036067 Camellia sinensis var. sinensis HOM05D003422 ORTHO05D004263 2.9e-24 116.3 121 59.5
Actinidia15098 Actinidia chinensis HOM05D003422 ORTHO05D004263 3.8e-24 115.9 77 84.4
Prupe.8G011700 Prunus persica HOM05D003422 ORTHO05D004263 8.6e-24 114.8 174 54.0
Hma1.2p1_3343F.1_g335440 Hydrangea macrophylla HOM05D003422 ORTHO05D004263 1.1e-23 114.4 172 51.2
Solyc01g005810.3 Solanum lycopersicum HOM05D003422 ORTHO05D004263 1.1e-23 114.4 124 55.6
Sopen01g001810 Solanum pennellii HOM05D003422 ORTHO05D004263 1.1e-23 114.4 124 55.6
BcaB05g24600 Brassica carinata HOM05D003422 ORTHO05D004263 1.5e-23 114.0 82 75.6
Peaxi162Scf00128g00219 Petunia axillaris HOM05D003422 ORTHO05D004263 1.5e-23 114.0 121 56.2
BcaC03g15214 Brassica carinata HOM05D003422 ORTHO05D004263 2.5e-23 113.2 82 74.4
C02p28010 Brassica napus HOM05D003422 ORTHO05D004263 2.5e-23 113.2 82 74.4
BolC2t08844H Brassica oleracea HOM05D003422 ORTHO05D004263 2.5e-23 113.2 82 74.4
CAN.G158.25 Capsicum annuum HOM05D003422 ORTHO05D004263 2.5e-23 113.2 77 79.2
BcaB03g15550 Brassica carinata HOM05D003422 ORTHO05D004263 3.3e-23 112.8 82 75.6
BcaC08g45809 Brassica carinata HOM05D003422 ORTHO05D004263 3.3e-23 112.8 82 75.6
C06p36020 Brassica napus HOM05D003422 ORTHO05D004263 3.3e-23 112.8 82 75.6
BolC6t38723H Brassica oleracea HOM05D003422 ORTHO05D004263 3.3e-23 112.8 82 75.6
Aa31LG7G7310 Aethionema arabicum HOM05D003422 ORTHO05D004263 5.6e-23 112.1 82 75.6
arahy.Tifrunner.gnm1.ann1.FFB06F Arachis hypogaea HOM05D003422 ORTHO05D004263 5.6e-23 112.1 94 72.3
arahy.Tifrunner.gnm1.ann1.G4VR7T Arachis hypogaea HOM05D003422 ORTHO05D004263 5.6e-23 112.1 94 72.3
A07p31020 Brassica napus HOM05D003422 ORTHO05D004263 5.6e-23 112.1 82 75.6
Nitab4.5_0001565g0060 Nicotiana tabacum HOM05D003422 ORTHO05D004263 5.6e-23 112.1 121 57.0
FvH4_7g31100 Fragaria vesca HOM05D003422 ORTHO05D004263 7.3e-23 111.7 67 91.0
Nitab4.5_0009109g0040 Nicotiana tabacum HOM05D003422 ORTHO05D004263 1.2e-22 110.9 121 57.0
BraA02t06729Z Brassica rapa HOM05D003422 ORTHO05D004263 1.6e-22 110.5 82 73.2
Manes.13G024200 Manihot esculenta HOM05D003422 ORTHO05D004263 1.6e-22 110.5 171 54.4
PGSC0003DMG400032131 Solanum tuberosum HOM05D003422 ORTHO05D004263 2.1e-22 110.2 84 71.4
Dinv15231 Davidia involucrata HOM05D003422 ORTHO05D004263 2.8e-22 109.8 121 57.9
TAR374G1409 Trochodendron aralioides HOM05D003422 ORTHO05D004263 2.8e-22 109.8 124 56.5
Ciclev10032237m.g Citrus clementina HOM05D003422 ORTHO05D004263 6.1e-22 108.6 124 54.0
GSVIVG01021879001 Vitis vinifera HOM05D003422 ORTHO05D004263 6.1e-22 108.6 124 55.6
VMungo1127G0899 Vigna mungo HOM05D003422 ORTHO05D004263 8.0e-22 108.2 80 77.5
Cpa.g.sc33.23 Carica papaya HOM05D003422 ORTHO05D004263 1.0e-21 107.8 79 77.2
Nitab4.5_0016963g0010 Nicotiana tabacum HOM05D003422 ORTHO05D004263 1.0e-21 107.8 176 45.5
GSVIVG01007655001 Vitis vinifera HOM05D003422 ORTHO05D004263 1.0e-21 107.8 124 55.6
arahy.Tifrunner.gnm1.ann1.I3QT17 Arachis hypogaea HOM05D003422 ORTHO05D004263 1.8e-21 107.1 80 76.2
Aqoxy5G03760 Aquilegia oxysepala HOM05D003422 ORTHO05D004263 3.0e-21 106.3 167 60.5
CANSAT64G0467 Cannabis sativa HOM05D003422 ORTHO05D004263 3.0e-21 106.3 174 50.6
SpUn0343_0020 Schrenkiella parvula HOM05D003422 ORTHO05D004263 4.0e-21 105.9 84 72.6
Nn8g39875 Nelumbo nucifera HOM05D003422 ORTHO05D004263 8.9e-21 104.8 93 67.7
A02p16750 Brassica napus HOM05D003422 ORTHO05D004263 1.2e-20 104.4 82 70.7
Thhalv10008312m.g Eutrema salsugineum HOM05D003422 ORTHO05D004263 2.0e-20 103.6 172 52.3
PGR102G0689 Punica granatum HOM05D003422 ORTHO05D004263 3.4e-20 102.8 75 74.7
Oeu041425.1 Olea europaea HOM05D003422 ORTHO05D004263 5.7e-20 102.1 158 46.2
Hund06028 Selenicereus undatus HOM05D003422 ORTHO05D004263 5.7e-20 102.1 165 50.9
Sc14g0008740 Simmondsia chinensis HOM05D003422 ORTHO05D004263 5.7e-20 102.1 82 69.5
CARHR023720 Cardamine hirsuta HOM05D003422 ORTHO05D004263 1.7e-19 100.5 77 72.7
Lsat_1_v5_gn_8_152261 Lactuca sativa HOM05D003422 ORTHO05D004263 2.9e-19 99.8 90 72.2
PSO017G5618 Papaver somniferum HOM05D003422 ORTHO05D004263 2.9e-19 99.8 163 54.6
THA.LOC104822989 Tarenaya hassleriana HOM05D003422 ORTHO05D004263 2.9e-19 99.8 82 70.7
HanXRQChr06g0172831 Helianthus annuus HOM05D003422 ORTHO05D004263 3.7e-19 99.4 133 51.9
TPR.G28314 Trifolium pratense HOM05D003422 ORTHO05D004263 3.7e-19 99.4 93 65.6
Lj1A759T42 Lonicera japonica HOM05D003422 ORTHO05D004263 4.9e-19 99.0 89 66.3
Ah.04g165080 Amaranthus hybridus HOM05D002611 ORTHO05D002822 8.3e-19 98.2 84 66.7
Dinv38208 Davidia involucrata HOM05D003422 ORTHO05D004263 8.3e-19 98.2 77 74.0
Lsat_1_v5_gn_5_166341 Lactuca sativa HOM05D003422 ORTHO05D004263 3.2e-18 96.3 157 48.4
HPP92_014432 Vanilla planifolia HOM05D003422 ORTHO05D004263 5.4e-18 95.5 94 63.8
Migut.E00204 Erythranthe guttata HOM05D003422 ORTHO05D004263 1.2e-17 94.4 84 65.5
Nn2g13933 Nelumbo nucifera HOM05D003422 ORTHO05D004263 1.2e-17 94.4 80 71.2
Nn8g40815 Nelumbo nucifera HOM05D003422 ORTHO05D004263 1.2e-17 94.4 80 71.2
QL03p061510 Quercus lobata HOM05D003422 ORTHO05D004263 1.6e-17 94.0 172 45.3
CiPaw.05G181800 Carya illinoinensis HOM05D003422 ORTHO05D004263 2.0e-17 93.6 175 46.3
Pp3c2_4220 Physcomitrium patens HOM05D003422 ORTHO05D004263 3.5e-17 92.8 78 64.1
CiPaw.05G159400 Carya illinoinensis HOM05D003422 ORTHO05D004263 5.9e-17 92.0 172 45.3
Psat7g167080 Pisum sativum HOM05D003422 ORTHO05D004263 7.8e-17 91.7 175 44.0
QL03p058012 Quercus lobata HOM05D003422 ORTHO05D004263 7.8e-17 91.7 172 44.8
Mapoly0061s0104 Marchantia polymorpha HOM05D003422 ORTHO05D004263 1.0e-16 91.3 84 59.5
AT1G23280 Arabidopsis thaliana HOM05D003422 ORTHO05D004263 1.3e-16 90.9 86 62.8
SEGI_07600 Sequoiadendron giganteum HOM05D003422 ORTHO05D004263 1.3e-16 90.9 84 60.7
Eucgr.K00985 Eucalyptus grandis HOM05D003422 ORTHO05D004263 3.9e-16 89.4 75 68.0
PSO017G4826 Papaver somniferum HOM05D003422 ORTHO05D004263 3.9e-16 89.4 78 62.8
PSO478G1628 Papaver somniferum HOM05D003422 ORTHO05D004263 3.9e-16 89.4 78 62.8
Phvul.010G035100 Phaseolus vulgaris HOM05D003422 ORTHO05D004263 3.9e-16 89.4 171 43.3
Carub.0001s2287 Capsella rubella HOM05D003422 ORTHO05D004263 5.0e-16 89.0 85 63.5
Eucgr.B00992 Eucalyptus grandis HOM05D003422 ORTHO05D004263 5.0e-16 89.0 93 59.1
Os07g0270900 Oryza sativa ssp. japonica HOM05D003422 ORTHO05D004263 5.0e-16 89.0 77 63.6
TWI23G0208 Tripterygium wilfordii HOM05D003422 ORTHO05D004263 8.6e-16 88.2 91 60.4
Phvul.011G000100 Phaseolus vulgaris HOM05D003422 ORTHO05D004263 1.1e-15 87.8 169 44.4
Rhsim02G0001300 Rhododendron simsii HOM05D003422 ORTHO05D004263 1.1e-15 87.8 189 38.6
TWI39G0719 Tripterygium wilfordii HOM05D003422 ORTHO05D004263 4.3e-15 85.9 94 57.4
ATR0824G091 Amborella trichopoda HOM05D003422 ORTHO05D004263 2.1e-14 83.6 85 60.0
TPR.G37166 Trifolium pratense HOM05D003422 ORTHO05D004263 2.1e-14 83.6 99 54.5
Glyma.12G119800 Glycine max HOM05D003422 ORTHO05D004263 3.6e-14 82.8 181 42.5
Eucgr.K01009 Eucalyptus grandis HOM05D003422 ORTHO05D004263 4.7e-14 82.4 93 55.9
vmacro17129 Vaccinium macrocarpon HOM05D003422 ORTHO05D004263 6.2e-14 82.0 136 47.1
DCAR_026512 Daucus carota HOM05D003422 ORTHO05D004263 1.0e-13 81.3 122 45.9
Lalb_Chr10g0099861 Lupinus albus HOM05D003422 ORTHO05D004263 1.4e-13 80.9 79 63.3
Zm00001eb364260 Zea mays HOM05D003422 ORTHO05D004263 2.3e-13 80.1 84 53.6
Medtr4g079190 Medicago truncatula HOM05D003422 ORTHO05D004263 3.1e-13 79.7 83 59.0
Rhsim06G0078600 Rhododendron simsii HOM05D003422 ORTHO05D004263 3.1e-13 79.7 164 43.9
Glyma.06G286100 Glycine max HOM05D003422 ORTHO05D004263 4.0e-13 79.3 182 45.1
AL1G31870 Arabidopsis lyrata HOM05D003422 ORTHO05D004263 5.2e-13 79.0 86 55.8
Nitab4.5_0000979g0020 Nicotiana tabacum HOM05D003422 ORTHO05D004263 5.2e-13 79.0 76 59.2
SMO331G0073 Selaginella moellendorffii HOM05D003422 ORTHO05D004263 5.2e-13 79.0 76 56.6
A03p43080 Brassica napus HOM05D003422 ORTHO05D004263 8.9e-13 78.2 170 46.5
Lalb_Chr04g0254851 Lupinus albus HOM05D003422 ORTHO05D004263 8.9e-13 78.2 86 58.1
CDE02G2608 Ceratophyllum demersum HOM05D003422 ORTHO05D004263 1.2e-12 77.8 77 61.0
vmacro16194 Vaccinium macrocarpon HOM05D003422 ORTHO05D004263 1.2e-12 77.8 63 68.3
AL1G37060 Arabidopsis lyrata HOM05D003422 ORTHO05D004263 1.5e-12 77.4 86 57.0
Actinidia27808 Actinidia chinensis HOM05D003422 ORTHO05D004263 2.0e-12 77.0 94 57.4
BcaC09g49229 Brassica carinata HOM05D003422 ORTHO05D004263 2.6e-12 76.6 65 73.8
Rhsim12G0110100 Rhododendron simsii HOM05D003422 ORTHO05D004263 2.6e-12 76.6 204 35.8
Cfa009213 Carpinus fangiana HOM05D003422 ORTHO05D004263 3.4e-12 76.3 124 43.5
Haze_08919 Corylus avellana HOM05D003422 ORTHO05D004263 3.4e-12 76.3 124 43.5
Haze_12250 Corylus avellana HOM05D003422 ORTHO05D004263 3.4e-12 76.3 124 43.5
Eucgr.K00976 Eucalyptus grandis HOM05D003422 ORTHO05D004263 4.4e-12 75.9 85 55.3
EL10Ac6g13812 Beta vulgaris HOM05D003422 ORTHO05D004263 5.8e-12 75.5 149 40.9
Cfa012129 Carpinus fangiana HOM05D003422 ORTHO05D004263 1.7e-11 73.9 78 57.7
BraA03t13450Z Brassica rapa HOM05D003422 ORTHO05D004263 2.9e-11 73.2 78 62.8
Pp3c1_36430 Physcomitrium patens HOM05D003422 ORTHO05D004263 2.9e-11 73.2 61 60.7
BcaC01g03409 Brassica carinata HOM05D003422 ORTHO05D004263 6.4e-11 72.0 178 39.3
C03p52870 Brassica napus HOM05D003422 ORTHO05D004263 6.4e-11 72.0 178 39.3
SEGI_38458 Sequoiadendron giganteum HOM05D003422 ORTHO05D004263 1.1e-10 71.2 66 57.6
BolC3t17554H Brassica oleracea HOM05D003422 ORTHO05D004263 1.4e-10 70.9 181 38.7
unitig_21.g20608 Utricularia gibba HOM05D003422 ORTHO05D004263 1.4e-10 70.9 84 52.4
BcaB04g17046 Brassica carinata HOM05D003422 ORTHO05D004263 7.0e-10 68.6 43 88.4
PRCOL_00004566 Prasinoderma coloniale HOM05D003422 ORTHO05D004263 7.0e-10 68.6 77 49.4
AagrBONN_evm.TU.Sc2ySwM_344.1527 Anthoceros agrestis HOM05D003422 ORTHO05D004263 1.6e-09 67.4 79 46.8
Cre02.g145231 Chlamydomonas reinhardtii HOM05D003422 ORTHO05D004263 1.6e-09 67.4 78 51.3
ATR0996G003 Amborella trichopoda HOM05D003422 ORTHO05D004263 6.0e-09 65.5 208 36.1
Potri.012G085300 Populus trichocarpa HOM05D003422 ORTHO05D004263 2.3e-08 63.5 124 39.5
BraA01t03342Z Brassica rapa HOM05D003422 ORTHO05D004263 5.0e-08 62.4 88 55.7
Actinidia01349 Actinidia chinensis HOM05D003422 ORTHO05D004263 6.6e-08 62.0 64 60.9
BcaB01g03637 Brassica carinata HOM05D003422 ORTHO05D004263 6.6e-08 62.0 43 81.4
A01p32170 Brassica napus HOM05D003422 ORTHO05D004263 1.5e-07 60.8 86 58.1
Ca_20120_v3 Cicer arietinum L. HOM05D003422 ORTHO05D004263 1.9e-07 60.5 79 50.6
SGA_v2.0_scaffold87G27078 Striga asiatica HOM05D003637 ORTHO05D004175 2.5e-07 60.1 124 35.5
AUR62017869 Chenopodium quinoa HOM05D003422 ORTHO05D004263 9.5e-07 58.2 150 36.7
Duzib068G0444 Durio zibethinus HOM05D003422 ORTHO05D004263 9.5e-07 58.2 167 32.9
BcaC09g49085 Brassica carinata HOM05D001456 ORTHO05D015898 1.2e-06 57.8 66 57.6
BolC1t04226H Brassica oleracea HOM05D003422 ORTHO05D028074 1.6e-06 57.4 76 55.3
SGA_v2.0_scaffold63G21735 Striga asiatica HOM05D003637 ORTHO05D004175 1.6e-06 57.4 77 46.8
AUR62003555 Chenopodium quinoa HOM05D003422 ORTHO05D004263 2.1e-06 57.0 151 35.8
CBR_g32274 Chara braunii HOM05D003422 ORTHO05D004263 2.8e-06 56.6 77 42.9
BcaB04g17978 Brassica carinata HOM05D005786 ORTHO05D006946 3.6e-06 56.2 40 77.5
Gorai.008G217200 Gossypium raimondii HOM05D003422 ORTHO05D004263 3.6e-06 56.2 168 35.1
BcaB04g17981 Brassica carinata HOM05D003422 ORTHO05D094432 6.2e-06 55.5 37 83.8
C01p42710 Brassica napus HOM05D003422 ORTHO05D028074 6.2e-06 55.5 76 53.9


User provided reference genes

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