Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G4176 Fragaria x ananassa HOM05D004671 ORTHO05D005638 3.9e-304 1047.3 539 100.0
FAN10G3685 Fragaria x ananassa HOM05D004671 ORTHO05D005638 8.1e-302 1039.6 539 99.3
FAN03G0738 Fragaria x ananassa HOM05D004671 ORTHO05D005638 4.3e-295 1017.3 541 97.8
FAN01G2609 Fragaria x ananassa HOM05D004671 ORTHO05D005638 6.9e-293 1010.0 539 97.0
FvH4_7g29570 Fragaria vesca HOM05D004671 ORTHO05D005638 1.4e-290 1002.3 539 96.7
FAN06G5094 Fragaria x ananassa HOM05D004671 ORTHO05D005638 1.8e-288 995.3 546 95.4
FAN06G3892 Fragaria x ananassa HOM05D004671 ORTHO05D005638 5.3e-285 983.8 560 92.7
RcHm_v2.0_Chr1g0377571 Rosa chinensis HOM05D004671 ORTHO05D005638 1.0e-251 873.2 548 85.6
RcHm_v2.0_Chr6g0258831 Rosa chinensis HOM05D004671 ORTHO05D005638 8.3e-222 773.9 540 78.3
Prupe.2G295500 Prunus persica HOM05D004671 ORTHO05D005638 1.6e-156 557.0 544 59.2
MD07G1271200 Malus domestica HOM05D004671 ORTHO05D005638 4.4e-154 548.9 540 57.0
MD01G1202100 Malus domestica HOM05D004671 ORTHO05D005638 1.0e-150 537.7 540 55.9
Thecc.03G178300 Theobroma cacao HOM05D004671 ORTHO05D005638 1.2e-148 530.8 545 56.0
CANSAT21G1295 Cannabis sativa HOM05D004671 ORTHO05D005638 1.4e-147 527.3 545 56.1
CANSAT21G1725 Cannabis sativa HOM05D004671 ORTHO05D005638 8.8e-147 524.6 543 55.6
Duzib205G1877 Durio zibethinus HOM05D004671 ORTHO05D005638 6.3e-145 518.5 569 53.6
GSVIVG01028933001 Vitis vinifera HOM05D004671 ORTHO05D005638 6.3e-145 518.5 546 53.7
Dinv24388 Davidia involucrata HOM05D004671 ORTHO05D005638 3.8e-142 509.2 547 52.7
Cpa.g.sc107.62 Carica papaya HOM05D004671 ORTHO05D005638 2.1e-140 503.4 561 51.0
Gohir.A09G041700 Gossypium hirsutum HOM05D004671 ORTHO05D005638 2.1e-140 503.4 545 53.6
CiPaw.03G107600 Carya illinoinensis HOM05D004671 ORTHO05D005638 6.1e-140 501.9 528 53.2
TAR629G1771 Trochodendron aralioides HOM05D004671 ORTHO05D005638 1.0e-139 501.1 547 52.7
Cfa002753 Carpinus fangiana HOM05D004671 ORTHO05D005638 1.2e-138 497.7 547 51.7
CsaV3_3G017180 Cucumis sativus L. HOM05D004671 ORTHO05D005638 1.2e-138 497.7 547 50.5
Gorai.006G048800 Gossypium raimondii HOM05D004671 ORTHO05D005638 1.2e-138 497.7 545 53.4
COL.COLO4_14329 Corchorus olitorius HOM05D004671 ORTHO05D005638 1.5e-138 497.3 544 51.8
Gohir.D09G042500 Gossypium hirsutum HOM05D004671 ORTHO05D005638 7.5e-138 495.0 545 53.0
Ciclev10004721m.g Citrus clementina HOM05D004671 ORTHO05D005638 1.3e-137 494.2 544 51.8
Eucgr.K00269 Eucalyptus grandis HOM05D004671 ORTHO05D005638 2.2e-137 493.4 540 51.3
Manes.14G025200 Manihot esculenta HOM05D004671 ORTHO05D005638 4.8e-137 492.3 547 50.8
ClCG05G008100 Citrullus lanatus HOM05D004671 ORTHO05D005638 3.1e-136 489.6 555 50.8
Atru.chr1.442 Acer truncatum HOM05D004671 ORTHO05D005638 4.5e-135 485.7 543 51.2
Cfa022980 Carpinus fangiana HOM05D004671 ORTHO05D005638 9.4e-133 478.0 544 49.8
Nn3g16880 Nelumbo nucifera HOM05D004671 ORTHO05D005638 9.1e-128 461.5 526 49.6
vmacro09835 Vaccinium macrocarpon HOM05D004671 ORTHO05D005638 9.1e-128 461.5 573 47.5
DCAR_015049 Daucus carota HOM05D004671 ORTHO05D005638 1.5e-125 454.1 549 47.5
DCAR_010301 Daucus carota HOM05D004671 ORTHO05D005638 1.9e-125 453.8 544 48.0
arahy.Tifrunner.gnm1.ann1.V0I5I8 Arachis hypogaea HOM05D004671 ORTHO05D005638 2.5e-125 453.4 557 47.8
PGR142G1152 Punica granatum HOM05D004671 ORTHO05D005638 2.5e-125 453.4 547 48.8
CAN.G208.79 Capsicum annuum HOM05D004671 ORTHO05D005638 1.0e-123 448.0 546 47.3
Phvul.007G071300 Phaseolus vulgaris HOM05D004671 ORTHO05D005638 1.4e-123 447.6 549 47.5
VMungo0720G2100 Vigna mungo HOM05D004671 ORTHO05D005638 3.0e-123 446.4 547 48.1
Lalb_Chr06g0161161 Lupinus albus HOM05D004671 ORTHO05D005638 1.2e-122 444.5 540 49.6
MSTRG.27109 Avicennia marina HOM05D004671 ORTHO05D005638 5.7e-122 442.2 547 47.5
Glyma.20G159500 Glycine max HOM05D004671 ORTHO05D005638 9.8e-122 441.4 550 47.6
Haze_25041 Corylus avellana HOM05D004671 ORTHO05D005638 1.3e-121 441.0 530 49.1
Glyma.10G234800 Glycine max HOM05D004671 ORTHO05D005638 1.3e-121 441.0 550 47.1
Nitab4.5_0001951g0070 Nicotiana tabacum HOM05D004671 ORTHO05D005638 9.2e-120 434.9 561 46.2
vmacro21316 Vaccinium macrocarpon HOM05D004671 ORTHO05D005638 7.8e-119 431.8 546 47.1
arahy.Tifrunner.gnm1.ann1.U8RPI8 Arachis hypogaea HOM05D004671 ORTHO05D005638 1.7e-118 430.6 617 43.4
TWI14G0685 Tripterygium wilfordii HOM05D004671 ORTHO05D005638 3.9e-118 429.5 545 47.5
Rhsim09G0198100 Rhododendron simsii HOM05D004671 ORTHO05D005638 7.3e-117 425.2 511 48.9
Aqoxy3G03421 Aquilegia oxysepala HOM05D004671 ORTHO05D005638 1.2e-116 424.5 547 47.0
Ca_10754_v3 Cicer arietinum L. HOM05D004671 ORTHO05D005638 1.2e-116 424.5 547 46.4
Actinidia03123 Actinidia chinensis HOM05D004671 ORTHO05D005638 1.6e-116 424.1 451 52.8
Aa31LG4G17500 Aethionema arabicum HOM05D004671 ORTHO05D005638 8.0e-116 421.8 543 44.8
SHI26612 Sapria himalayana HOM05D004671 ORTHO05D005638 4.0e-115 419.5 542 46.3
ECA233G0868 Erigeron canadensis HOM05D004671 ORTHO05D005638 1.2e-114 417.9 546 45.2
Cc02_g02840 Coffea canephora HOM05D004671 ORTHO05D005638 9.8e-114 414.8 549 44.3
Potri.015G144900 Populus trichocarpa HOM05D004671 ORTHO05D005638 1.7e-113 414.1 546 46.9
THA.LOC104818634 Tarenaya hassleriana HOM05D004671 ORTHO05D005638 2.2e-113 413.7 546 44.5
AL6G42740 Arabidopsis lyrata HOM05D004671 ORTHO05D005638 1.4e-112 411.0 545 44.8
AL5G28510 Arabidopsis lyrata HOM05D004671 ORTHO05D005638 2.0e-111 407.1 545 44.6
TPR.G27007 Trifolium pratense HOM05D004671 ORTHO05D005638 3.5e-111 406.4 547 45.5
Sp5g13050 Schrenkiella parvula HOM05D004671 ORTHO05D005638 1.3e-110 404.4 545 43.5
Psat6g198360 Pisum sativum HOM05D004671 ORTHO05D005638 1.7e-110 404.1 546 45.6
Lj5g0019412 Lotus japonicus HOM05D004671 ORTHO05D005638 3.0e-110 403.3 544 45.4
HanXRQChr15g0497081 Helianthus annuus HOM05D004671 ORTHO05D005638 6.6e-110 402.1 545 44.6
GSVIVG01017918001 Vitis vinifera HOM05D004671 ORTHO05D005638 6.6e-110 402.1 542 46.1
AT3G49000 Arabidopsis thaliana HOM05D004671 ORTHO05D005638 5.6e-109 399.1 546 43.4
Thhalv10010290m.g Eutrema salsugineum HOM05D004671 ORTHO05D005638 7.3e-109 398.7 545 43.7
HanXRQChr06g0163751 Helianthus annuus HOM05D004671 ORTHO05D005638 9.5e-109 398.3 540 44.1
BcaC01g02382 Brassica carinata HOM05D004671 ORTHO05D005638 1.2e-108 397.9 545 43.3
BolC3t18845H Brassica oleracea HOM05D004671 ORTHO05D005638 1.2e-108 397.9 545 43.3
HanXRQChr10g0304161 Helianthus annuus HOM05D004671 ORTHO05D005638 1.6e-108 397.5 546 44.7
Sabra15G0154400 Salix brachista HOM05D004671 ORTHO05D005638 2.1e-108 397.1 571 44.8
C03p65870 Brassica napus HOM05D004671 ORTHO05D005638 2.8e-108 396.7 545 43.1
Lsat_1_v5_gn_8_8441 Lactuca sativa HOM05D004671 ORTHO05D005638 4.7e-108 396.0 546 43.8
PSO017G5643 Papaver somniferum HOM05D004671 ORTHO05D005638 8.9e-107 391.7 546 44.5
Lsat_1_v5_gn_3_14041 Lactuca sativa HOM05D004671 ORTHO05D005638 2.6e-106 390.2 547 44.8
PSO063G7539 Papaver somniferum HOM05D004671 ORTHO05D005638 3.4e-106 389.8 546 44.5
BcaB02g09572 Brassica carinata HOM05D004671 ORTHO05D005638 5.8e-106 389.0 544 42.6
MELO3C031814.2 Cucumis melo HOM05D004671 ORTHO05D005638 7.5e-106 388.7 496 46.0
Medtr1g101100 Medicago truncatula HOM05D004671 ORTHO05D005638 9.8e-106 388.3 547 43.5
EL10Ac3g05622 Beta vulgaris HOM05D004671 ORTHO05D005638 1.7e-105 387.5 548 42.7
CARHR157820 Cardamine hirsuta HOM05D004671 ORTHO05D005638 2.9e-105 386.7 547 43.1
Sc13g0008790 Simmondsia chinensis HOM05D004671 ORTHO05D005638 1.4e-104 384.4 548 43.1
AUR62015967 Chenopodium quinoa HOM05D004671 ORTHO05D005638 1.9e-104 384.0 567 42.3
A06p28000 Brassica napus HOM05D004671 ORTHO05D005638 2.4e-104 383.6 547 42.2
SGA_v2.0_scaffold60G21057 Striga asiatica HOM05D004671 ORTHO05D005638 2.4e-104 383.6 544 42.1
BraA06t25741Z Brassica rapa HOM05D004671 ORTHO05D005638 7.1e-104 382.1 545 41.7
Hund04757 Selenicereus undatus HOM05D004671 ORTHO05D005638 1.7e-102 377.5 542 42.8
Sed0007536 Sechium edule HOM05D004671 ORTHO05D005638 2.3e-102 377.1 455 49.0
Migut.K00770 Erythranthe guttata HOM05D004671 ORTHO05D005638 5.1e-102 375.9 541 42.7
SalBow1G2445 Salvia bowleyana HOM05D004671 ORTHO05D005638 5.1e-102 375.9 542 42.1
Thhalv10003189m.g Eutrema salsugineum HOM05D004671 ORTHO05D005638 7.3e-101 372.1 543 42.9
SalBow1G5895 Salvia bowleyana HOM05D004671 ORTHO05D005638 1.6e-100 370.9 552 41.5
HPP92_020192 Vanilla planifolia HOM05D004671 ORTHO05D005638 2.8e-100 370.2 547 42.4
Carub.0005s1517 Capsella rubella HOM05D004671 ORTHO05D005638 1.8e-99 367.5 558 43.0
Sed0027520 Sechium edule HOM05D004671 ORTHO05D005638 1.6e-95 354.4 432 46.8
Ah.13g068640 Amaranthus hybridus HOM05D004671 ORTHO05D005638 2.1e-95 354.0 544 39.9
Peaxi162Scf00848g00012 Petunia axillaris HOM05D004671 ORTHO05D005638 8.6e-94 348.6 394 50.0
Haze_13677 Corylus avellana HOM05D004671 ORTHO05D005638 1.5e-93 347.8 686 37.0
ATR0737G144 Amborella trichopoda HOM05D004671 ORTHO05D005638 2.1e-92 344.0 543 41.6
Solyc06g036000.4 Solanum lycopersicum HOM05D004671 ORTHO05D005638 1.4e-91 341.3 394 50.8
AUR62021173 Chenopodium quinoa HOM05D004671 ORTHO05D005638 5.8e-90 335.9 542 40.0
Sc13g0008760 Simmondsia chinensis HOM05D004671 ORTHO05D005638 5.8e-90 335.9 525 41.0
Carub.0004s0531 Capsella rubella HOM05D004671 ORTHO05D005638 2.9e-89 333.6 545 39.3
Nitab4.5_0000080g0100 Nicotiana tabacum HOM05D004671 ORTHO05D005638 3.6e-84 316.6 568 39.3
unitig_37.g12531 Utricularia gibba HOM05D004671 ORTHO05D005638 9.0e-83 312.0 578 38.2
Pp3c16_7220 Physcomitrium patens HOM05D004671 ORTHO05D005638 3.8e-81 306.6 573 37.0
AagrBONN_evm.TU.Sc2ySwM_344.423 Anthoceros agrestis HOM05D004671 ORTHO05D005638 1.0e-78 298.5 567 35.3
Sopen06g011780 Solanum pennellii HOM05D004671 ORTHO05D005638 2.5e-77 293.9 342 49.1
Mapoly0133s0004 Marchantia polymorpha HOM05D004671 ORTHO05D005638 4.0e-75 286.6 562 35.4
Sc13g0008680 Simmondsia chinensis HOM05D004671 ORTHO05D005638 3.8e-73 280.0 486 39.1
Zm00001eb160040 Zea mays HOM05D004671 ORTHO05D005638 1.6e-71 274.6 549 36.4
MD07G1271300 Malus domestica HOM05D004671 ORTHO05D005638 6.7e-70 269.2 292 54.1
arahy.Tifrunner.gnm1.ann1.R5FQEP Arachis hypogaea HOM05D004671 ORTHO05D005638 2.5e-69 267.3 403 42.9
QL09p013914 Quercus lobata HOM05D004671 ORTHO05D005638 1.1e-67 261.9 285 54.0
CDE04G3622 Ceratophyllum demersum HOM05D004671 ORTHO05D005638 2.4e-67 260.8 348 44.5
Os01g0679000 Oryza sativa ssp. japonica HOM05D004671 ORTHO05D005638 2.5e-64 250.8 546 35.0
arahy.Tifrunner.gnm1.ann1.4LKL39 Arachis hypogaea HOM05D004671 ORTHO05D005638 1.3e-60 238.4 351 42.7
CSS0035516 Camellia sinensis var. sinensis HOM05D004671 ORTHO05D005638 2.0e-58 231.1 275 53.1
SMO143G0293 Selaginella moellendorffii HOM05D004671 ORTHO05D005638 4.2e-56 223.4 500 34.6
Ah.13g076510 Amaranthus hybridus HOM05D004671 ORTHO05D007692 2.0e-50 204.5 348 37.4
Oeu004097.1 Olea europaea HOM05D004671 ORTHO05D005638 3.8e-49 200.3 230 50.4
Migut.K01220 Erythranthe guttata HOM05D004671 ORTHO05D005638 3.2e-48 197.2 278 42.8
SMO276G0042 Selaginella moellendorffii HOM05D004671 ORTHO05D005638 4.2e-48 196.8 454 33.0
Oeu002719.1 Olea europaea HOM05D004671 ORTHO05D005638 1.6e-39 168.3 315 37.5
HanXRQChr06g0163701 Helianthus annuus HOM05D001754 ORTHO05D005638 9.4e-32 142.5 356 33.1
Glyma.20G157700 Glycine max HOM05D004671 ORTHO05D005638 6.1e-31 139.8 143 48.3
BolC8t50021H Brassica oleracea HOM05D004671 ORTHO05D005638 6.7e-30 136.3 157 44.6
CSS0016908 Camellia sinensis var. sinensis HOM05D004671 ORTHO05D005638 6.7e-30 136.3 133 50.4
C08p23970 Brassica napus HOM05D004671 ORTHO05D005638 1.1e-29 135.6 157 45.2
CDE04G1371 Ceratophyllum demersum HOM05D004671 ORTHO05D005638 2.2e-28 131.3 169 45.0
BcaB01g00761 Brassica carinata HOM05D004671 ORTHO05D005638 8.2e-28 129.4 228 36.4
BcaC07g39376 Brassica carinata HOM05D004671 ORTHO05D005638 1.4e-27 128.6 152 44.1
Cre16.g673900 Chlamydomonas reinhardtii HOM05D004671 ORTHO05D005638 1.6e-26 125.2 658 22.6
Zm00001eb440850 Zea mays HOM05D004671 ORTHO05D005638 2.2e-25 121.3 206 38.3
CBR_g5700 Chara braunii HOM05D004671 ORTHO05D005638 2.9e-25 120.9 182 40.7
Glyma.12G162990 Glycine max HOM05D004671 ORTHO05D005638 5.5e-24 116.7 137 46.0
MCO01G383 Micromonas commoda HOM05D004671 ORTHO05D005638 5.5e-24 116.7 493 25.2
CBR_g5701 Chara braunii HOM05D004671 ORTHO05D005638 2.4e-19 101.3 188 29.8
CAN.G527.1 Capsicum annuum HOM05D004671 ORTHO05D005638 1.7e-17 95.1 249 32.1
Peaxi162Scf00848g00015 Petunia axillaris HOM05D004671 ORTHO05D005638 8.0e-15 86.3 132 34.8
RcHm_v2.0_Chr1g0346601 Rosa chinensis HOM05D004671 ORTHO05D005638 2.3e-14 84.7 66 72.7
AL5G14400 Arabidopsis lyrata HOM05D004671 ORTHO05D005638 5.2e-14 83.6 247 28.7
RcHm_v2.0_Chr2g0108991 Rosa chinensis HOM05D004671 ORTHO05D005638 1.7e-12 78.6 66 69.7
Cre11.g476376 Chlamydomonas reinhardtii HOM05D030013 ORTHO05D028799 6.3e-12 76.6 177 31.6
HanXRQChr06g0163721 Helianthus annuus HOM05D004671 ORTHO05D005638 1.2e-07 62.4 95 45.3
arahy.Tifrunner.gnm1.ann1.674JY7 Arachis hypogaea HOM05D004671 ORTHO05D038832 8.0e-07 59.7 89 41.6
arahy.Tifrunner.gnm1.ann1.X2DDWJ Arachis hypogaea HOM05D001074 ORTHO05D038832 8.9e-06 56.2 84 41.7


User provided reference genes

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