Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G4171 Fragaria x ananassa HOM05D007398 ORTHO05D004912 8.1e-67 256.9 128 100.0
FvH4_6g43180 Fragaria vesca HOM05D007398 ORTHO05D004912 5.3e-66 254.2 128 98.4
FAN14G0586 Fragaria x ananassa HOM05D007398 ORTHO05D004912 4.5e-65 251.1 128 97.7
FAN02G4350 Fragaria x ananassa HOM05D007398 ORTHO05D004912 5.4e-63 244.2 128 96.1
FAN05G1963 Fragaria x ananassa HOM05D007398 ORTHO05D004912 7.1e-63 243.8 128 95.3
FAN09G1954 Fragaria x ananassa HOM05D007398 ORTHO05D004912 2.3e-61 238.8 128 93.0
RcHm_v2.0_Chr2g0159281 Rosa chinensis HOM05D007398 ORTHO05D004912 2.3e-61 238.8 128 93.8
Prupe.3G217200 Prunus persica HOM05D007398 ORTHO05D004912 3.4e-49 198.4 129 76.7
MD17G1096900 Malus domestica HOM05D007398 ORTHO05D004912 7.1e-47 190.7 129 72.9
MD09G1108900 Malus domestica HOM05D007398 ORTHO05D004912 1.3e-45 186.4 129 74.4
CANSAT64G0797 Cannabis sativa HOM05D007398 ORTHO05D004912 1.4e-37 159.8 130 66.9
Cfa014400 Carpinus fangiana HOM05D007398 ORTHO05D004912 4.8e-35 151.4 141 60.3
CiPaw.03G160000 Carya illinoinensis HOM05D007398 ORTHO05D004912 4.8e-35 151.4 139 60.4
Haze_12865 Corylus avellana HOM05D007398 ORTHO05D004912 4.8e-35 151.4 142 60.6
QL08p033081 Quercus lobata HOM05D007398 ORTHO05D004912 3.4e-33 145.2 142 56.3
Hma1.2p1_0328F.1_g126925 Hydrangea macrophylla HOM05D007398 ORTHO05D004912 1.7e-32 142.9 135 62.2
Hma1.2p1_0328F.1_g126930 Hydrangea macrophylla HOM05D007398 ORTHO05D004912 1.7e-32 142.9 135 62.2
CSS0017183 Camellia sinensis var. sinensis HOM05D007398 ORTHO05D004912 9.4e-31 137.1 133 60.9
TWI75G1275 Tripterygium wilfordii HOM05D007398 ORTHO05D004912 9.4e-31 137.1 134 59.0
Atru.chr6.3184 Acer truncatum HOM05D007398 ORTHO05D004912 1.0e-29 133.7 138 60.1
Atru.chr6.3183 Acer truncatum HOM05D007398 ORTHO05D004912 2.3e-29 132.5 138 60.1
TWI18G0787 Tripterygium wilfordii HOM05D007398 ORTHO05D004912 2.3e-29 132.5 134 59.0
Ciclev10017196m.g Citrus clementina HOM05D007398 ORTHO05D004912 5.1e-29 131.3 132 58.3
Actinidia30523 Actinidia chinensis HOM05D007398 ORTHO05D004912 2.6e-28 129.0 130 57.7
arahy.Tifrunner.gnm1.ann1.TIC55L Arachis hypogaea HOM05D007398 ORTHO05D004912 3.3e-28 128.6 138 57.2
COL.COLO4_27711 Corchorus olitorius HOM05D007398 ORTHO05D004912 1.4e-26 123.2 124 53.2
arahy.Tifrunner.gnm1.ann1.X0QM4L Arachis hypogaea HOM05D007398 ORTHO05D004912 2.4e-26 122.5 138 55.8
Gohir.A12G157600 Gossypium hirsutum HOM05D007398 ORTHO05D004912 1.2e-25 120.2 124 53.2
TAR626G0532 Trochodendron aralioides HOM05D007398 ORTHO05D004912 1.2e-25 120.2 138 54.3
Ca_01601_v3 Cicer arietinum L. HOM05D007398 ORTHO05D004912 1.5e-25 119.8 120 57.5
Gorai.008G173500 Gossypium raimondii HOM05D007398 ORTHO05D004912 4.5e-25 118.2 124 53.2
Dinv39711 Davidia involucrata HOM05D007398 ORTHO05D004912 5.9e-25 117.9 127 57.5
Duzib251G0280 Durio zibethinus HOM05D007398 ORTHO05D004912 5.9e-25 117.9 124 54.8
TAR629G1636 Trochodendron aralioides HOM05D007398 ORTHO05D004912 2.2e-24 115.9 137 52.6
TAR627G0987 Trochodendron aralioides HOM05D007398 ORTHO05D004912 3.8e-24 115.2 136 51.5
TPR.G4189 Trifolium pratense HOM05D007398 ORTHO05D004912 5.0e-24 114.8 123 54.5
Duzib248G0799 Durio zibethinus HOM05D007398 ORTHO05D004912 1.9e-23 112.8 124 50.0
Gohir.D12G159800 Gossypium hirsutum HOM05D007398 ORTHO05D004912 2.5e-23 112.5 124 51.6
Lsat_1_v5_gn_7_92201 Lactuca sativa HOM05D007398 ORTHO05D004912 5.5e-23 111.3 147 43.5
Psat5g264000 Pisum sativum HOM05D007398 ORTHO05D004912 5.5e-23 111.3 124 54.8
QL07p015665 Quercus lobata HOM05D007398 ORTHO05D004912 5.5e-23 111.3 130 52.3
Glyma.13G308800 Glycine max HOM05D007398 ORTHO05D004912 7.2e-23 110.9 123 53.7
Thecc.02G314700 Theobroma cacao HOM05D007398 ORTHO05D004912 1.2e-22 110.2 124 50.8
VMungo1080G0246 Vigna mungo HOM05D007398 ORTHO05D004912 2.1e-22 109.4 128 51.6
Manes.13G070200 Manihot esculenta HOM05D007398 ORTHO05D004912 8.0e-22 107.5 127 53.5
Nn1g03511 Nelumbo nucifera HOM05D007398 ORTHO05D004912 2.3e-21 105.9 125 51.2
Phvul.005G115200 Phaseolus vulgaris HOM05D007398 ORTHO05D004912 2.3e-21 105.9 135 51.1
Medtr2g088320 Medicago truncatula HOM05D007398 ORTHO05D004912 3.0e-21 105.5 122 52.5
Rhsim06G0162600 Rhododendron simsii HOM05D007398 ORTHO05D004912 4.0e-21 105.1 134 51.5
Sed0010410 Sechium edule HOM05D007398 ORTHO05D004912 5.2e-21 104.8 128 52.3
Gohir.A04G144600 Gossypium hirsutum HOM05D007398 ORTHO05D004912 8.8e-21 104.0 114 50.9
ECA236G3422 Erigeron canadensis HOM05D007398 ORTHO05D004912 1.1e-20 103.6 140 47.1
FAN25G0828 Fragaria x ananassa HOM05D000531 ORTHO05D000877 2.6e-20 102.4 64 82.8
FAN25G2216 Fragaria x ananassa HOM05D000531 ORTHO05D000877 2.6e-20 102.4 64 82.8
Glyma.12G193700 Glycine max HOM05D007398 ORTHO05D004912 4.4e-20 101.7 136 48.5
Eucgr.K00797 Eucalyptus grandis HOM05D007398 ORTHO05D004912 7.4e-20 100.9 132 48.5
Gohir.D04G189100 Gossypium hirsutum HOM05D007398 ORTHO05D004912 2.2e-19 99.4 114 50.0
PSO541G0095 Papaver somniferum HOM05D007398 ORTHO05D004912 2.2e-19 99.4 140 47.1
MELO3C018817.2 Cucumis melo HOM05D007398 ORTHO05D004912 8.2e-19 97.4 121 50.4
Gorai.012G184400 Gossypium raimondii HOM05D007398 ORTHO05D004912 8.2e-19 97.4 114 50.0
Cc05_g04620 Coffea canephora HOM05D007398 ORTHO05D004912 1.1e-18 97.1 131 48.1
Actinidia03605 Actinidia chinensis HOM05D007398 ORTHO05D004912 3.1e-18 95.5 128 47.7
ClCG00G003290 Citrullus lanatus HOM05D007398 ORTHO05D004912 4.1e-18 95.1 126 48.4
ClCG02G001930 Citrullus lanatus HOM05D007398 ORTHO05D004912 4.1e-18 95.1 126 48.4
CsaV3_7G003580 Cucumis sativus L. HOM05D007398 ORTHO05D004912 7.0e-18 94.4 121 51.2
Lalb_Chr19g0135871 Lupinus albus HOM05D007398 ORTHO05D004912 1.2e-17 93.6 132 43.9
Oeu041920.1 Olea europaea HOM05D007398 ORTHO05D004912 2.0e-17 92.8 142 46.5
Sed0025347 Sechium edule HOM05D007398 ORTHO05D004912 5.9e-17 91.3 135 46.7
Lsat_1_v5_gn_9_106500 Lactuca sativa HOM05D007398 ORTHO05D004912 1.1e-15 87.0 145 40.7
ClCG02G008700 Citrullus lanatus HOM05D007398 ORTHO05D004912 1.9e-15 86.3 135 45.9
MBI02_g21879_MAGBIO Magnolia biondii HOM05D007398 ORTHO05D004912 1.9e-15 86.3 112 48.2
Aqoxy1G02145 Aquilegia oxysepala HOM05D007398 ORTHO05D004912 4.2e-15 85.1 137 43.8
Sed0017095 Sechium edule HOM05D007398 ORTHO05D004912 4.2e-15 85.1 133 43.6
Sed0017131 Sechium edule HOM05D007398 ORTHO05D004912 7.2e-15 84.3 127 50.4
Manes.15G071300 Manihot esculenta HOM05D007398 ORTHO05D004912 4.7e-14 81.6 124 42.7
Lalb_Chr24g0393181 Lupinus albus HOM05D007398 ORTHO05D004912 4.0e-13 78.6 116 44.8
HanXRQChr16g0504931 Helianthus annuus HOM05D007398 ORTHO05D004912 1.5e-12 76.6 140 42.9
Manes.03G130000 Manihot esculenta HOM05D007398 ORTHO05D004912 1.5e-12 76.6 118 43.2
HanXRQChr03g0069481 Helianthus annuus HOM05D007398 ORTHO05D004912 2.6e-12 75.9 127 40.9
Lj3g0008615 Lotus japonicus HOM05D007398 ORTHO05D004912 1.3e-11 73.6 116 44.8
Cpa.g.sc12.298 Carica papaya HOM05D007398 ORTHO05D004912 3.7e-11 72.0 134 39.6
Lj4g0016348 Lotus japonicus HOM05D007398 ORTHO05D004912 1.4e-10 70.1 124 37.9
PGR083G1220 Punica granatum HOM05D007398 ORTHO05D004912 3.1e-10 68.9 121 43.0
Zm00001eb070220 Zea mays HOM05D007398 ORTHO05D004912 4.1e-10 68.6 133 38.3
Zm00001eb273730 Zea mays HOM05D007398 ORTHO05D004912 2.0e-09 66.2 138 39.1
THA.LOC104813425 Tarenaya hassleriana HOM05D009587 ORTHO05D004912 1.0e-08 63.9 126 36.5
CARHR234560 Cardamine hirsuta HOM05D009587 ORTHO05D004912 1.3e-08 63.5 125 36.8
CDE01G0169 Ceratophyllum demersum HOM05D001264 ORTHO05D001167 1.3e-08 63.5 131 36.6
ECA240G1365 Erigeron canadensis HOM05D007398 ORTHO05D004912 1.3e-08 63.5 101 44.6
Thecc.07G035100 Theobroma cacao HOM05D007398 ORTHO05D004912 2.9e-08 62.4 89 44.9
BcaC01g06332 Brassica carinata HOM05D009587 ORTHO05D004912 5.0e-08 61.6 102 39.2
Zm00001eb431260 Zea mays HOM05D007398 ORTHO05D004912 6.5e-08 61.2 146 35.6
A03p14360 Brassica napus HOM05D009587 ORTHO05D004912 8.5e-08 60.8 98 39.8
Duzib213G1052 Durio zibethinus HOM05D007398 ORTHO05D004912 1.1e-07 60.5 87 44.8
QL05p073115 Quercus lobata HOM05D007398 ORTHO05D004912 1.1e-07 60.5 89 40.4
Potri.006G052300 Populus trichocarpa HOM05D007398 ORTHO05D004912 1.5e-07 60.1 120 35.8
SEGI_01426 Sequoiadendron giganteum HOM05D007398 ORTHO05D004912 1.5e-07 60.1 126 35.7
Sc16g0005970 Simmondsia chinensis HOM05D007398 ORTHO05D004912 1.9e-07 59.7 121 36.4
ATR0794G061 Amborella trichopoda HOM05D007398 ORTHO05D004912 2.5e-07 59.3 146 31.5
Haze_06802 Corylus avellana HOM05D061810 ORTHO05D004912 2.5e-07 59.3 103 38.8
AT4G26960 Arabidopsis thaliana HOM05D009587 ORTHO05D004912 3.2e-07 58.9 131 33.6
Carub.0008s1526 Capsella rubella HOM05D009587 ORTHO05D004912 3.2e-07 58.9 130 35.4
Thhalv10015018m.g Eutrema salsugineum HOM05D009587 ORTHO05D004912 3.2e-07 58.9 124 35.5
Carub.0007s1391 Capsella rubella HOM05D009587 ORTHO05D004912 5.5e-07 58.2 130 38.5
Sp7g24900 Schrenkiella parvula HOM05D009587 ORTHO05D004912 5.5e-07 58.2 128 35.2
SGA_v2.0_scaffold4G01914 Striga asiatica HOM05D011575 ORTHO05D004912 5.5e-07 58.2 96 41.7
QL05p073125 Quercus lobata HOM05D007398 ORTHO05D004912 7.2e-07 57.8 96 37.5
MSTRG.7209 Avicennia marina HOM05D011575 ORTHO05D004912 9.4e-07 57.4 102 42.2
Os04g0624701 Oryza sativa ssp. japonica HOM05D007398 ORTHO05D004912 9.4e-07 57.4 102 39.2
Gohir.A01G080300 Gossypium hirsutum HOM05D007398 ORTHO05D004912 1.2e-06 57.0 132 34.1
Sp6g16920 Schrenkiella parvula HOM05D009587 ORTHO05D004912 1.2e-06 57.0 132 34.1
BraA03t10733Z Brassica rapa HOM05D009587 ORTHO05D004912 2.1e-06 56.2 99 39.4
C03p16740 Brassica napus HOM05D009587 ORTHO05D004912 2.7e-06 55.8 83 42.2
AUR62015784 Chenopodium quinoa HOM05D007398 ORTHO05D004912 3.6e-06 55.5 105 40.0
AT5G54970 Arabidopsis thaliana HOM05D009587 ORTHO05D004912 4.7e-06 55.1 94 39.4
Gohir.D01G067500 Gossypium hirsutum HOM05D007398 ORTHO05D004912 4.7e-06 55.1 132 33.3
Gorai.002G089400 Gossypium raimondii HOM05D007398 ORTHO05D004912 4.7e-06 55.1 132 33.3
VMungo0647G2151 Vigna mungo HOM05D011727 ORTHO05D004912 6.1e-06 54.7 92 41.3
AL8G30440 Arabidopsis lyrata HOM05D009587 ORTHO05D004912 8.0e-06 54.3 130 32.3
THA.LOC104817668 Tarenaya hassleriana HOM05D009587 ORTHO05D004912 8.0e-06 54.3 133 33.8


User provided reference genes

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