Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G4155 Fragaria x ananassa HOM05D004221 ORTHO05D004998 9.6e-78 293.5 157 100.0
FAN03G0273 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.1e-76 290.0 157 98.1
FAN23G3078 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.1e-76 290.0 157 98.1
FAN17G0592 Fragaria x ananassa HOM05D004221 ORTHO05D004998 4.0e-76 288.1 157 97.5
FAN15G1018 Fragaria x ananassa HOM05D004221 ORTHO05D004998 9.0e-76 287.0 157 97.5
FAN07G0046 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.4e-73 279.6 157 94.3
FvH4_4g37090 Fragaria vesca HOM05D004221 ORTHO05D004998 1.9e-73 279.3 157 94.3
FAN03G3278 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.8e-71 272.7 157 94.3
FAN10G1077 Fragaria x ananassa HOM05D004221 ORTHO05D004998 8.7e-71 270.4 157 93.0
FAN17G2528 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.3e-69 266.5 156 92.9
RcHm_v2.0_Chr4g0446851 Rosa chinensis HOM05D004221 ORTHO05D004998 2.4e-68 262.3 150 91.3
FAN12G1261 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.7e-66 256.1 142 94.4
Prupe.1G348800 Prunus persica HOM05D004221 ORTHO05D004998 1.9e-62 242.7 155 83.2
FAN07G1220 Fragaria x ananassa HOM05D004221 ORTHO05D004998 6.3e-61 237.7 128 96.9
MD13G1003600 Malus domestica HOM05D004221 ORTHO05D004998 9.0e-60 233.8 155 80.0
MD16G1003800 Malus domestica HOM05D004221 ORTHO05D004998 2.0e-59 232.6 157 79.0
PGR044G1895 Punica granatum HOM05D004221 ORTHO05D004998 2.5e-57 225.7 144 79.9
RcHm_v2.0_Chr4g0391031 Rosa chinensis HOM05D004221 ORTHO05D004998 1.6e-56 223.0 122 93.4
RcHm_v2.0_Chr2g0169341 Rosa chinensis HOM05D004221 ORTHO05D004998 2.7e-56 222.2 122 92.6
RcHm_v2.0_Chr6g0253901 Rosa chinensis HOM05D004221 ORTHO05D004998 2.7e-56 222.2 122 92.6
Nn3g18605 Nelumbo nucifera HOM05D004221 ORTHO05D004998 4.6e-56 221.5 141 78.7
RcHm_v2.0_Chr4g0389221 Rosa chinensis HOM05D004221 ORTHO05D004998 7.9e-56 220.7 122 91.8
COL.COLO4_33086 Corchorus olitorius HOM05D004221 ORTHO05D004998 1.0e-55 220.3 141 76.6
Gohir.A01G012400 Gossypium hirsutum HOM05D004221 ORTHO05D004998 2.3e-55 219.2 142 76.1
Thecc.02G156600 Theobroma cacao HOM05D004221 ORTHO05D004998 3.0e-55 218.8 142 73.2
Potri.005G090100 Populus trichocarpa HOM05D004221 ORTHO05D004998 3.9e-55 218.4 141 75.2
RcHm_v2.0_Chr1g0343381 Rosa chinensis HOM05D004221 ORTHO05D004998 3.9e-55 218.4 122 91.0
Hund24383 Selenicereus undatus HOM05D004221 ORTHO05D004998 3.9e-55 218.4 141 78.7
THA.LOC104800677 Tarenaya hassleriana HOM05D004221 ORTHO05D004998 3.9e-55 218.4 146 74.0
Ciclev10032992m.g Citrus clementina HOM05D004221 ORTHO05D004998 6.7e-55 217.6 148 74.3
ECA232G2799 Erigeron canadensis HOM05D004221 ORTHO05D004998 6.7e-55 217.6 142 76.1
Eucgr.J00883 Eucalyptus grandis HOM05D004221 ORTHO05D004998 6.7e-55 217.6 141 78.7
Gorai.002G015400 Gossypium raimondii HOM05D004221 ORTHO05D004998 6.7e-55 217.6 142 76.1
RcHm_v2.0_Chr5g0039981 Rosa chinensis HOM05D004221 ORTHO05D004998 6.7e-55 217.6 122 91.0
Cfa008767 Carpinus fangiana HOM05D004221 ORTHO05D004998 8.7e-55 217.2 140 77.1
CiPaw.06G062100 Carya illinoinensis HOM05D004221 ORTHO05D004998 8.7e-55 217.2 140 77.1
Gohir.D01G013600 Gossypium hirsutum HOM05D004221 ORTHO05D004998 8.7e-55 217.2 142 75.4
CANSAT78G1084 Cannabis sativa HOM05D004221 ORTHO05D004998 1.1e-54 216.9 142 78.2
Nitab4.5_0013217g0020 Nicotiana tabacum HOM05D004221 ORTHO05D004998 1.5e-54 216.5 143 75.5
RcHm_v2.0_Chr5g0070771 Rosa chinensis HOM05D004221 ORTHO05D004998 1.5e-54 216.5 122 90.2
AUR62032953 Chenopodium quinoa HOM05D004221 ORTHO05D004998 2.5e-54 215.7 141 78.7
Migut.E00685 Erythranthe guttata HOM05D004221 ORTHO05D004998 3.3e-54 215.3 146 75.3
PGSC0003DMG400016397 Solanum tuberosum HOM05D004221 ORTHO05D004998 4.3e-54 214.9 139 76.3
TWI77G0364 Tripterygium wilfordii HOM05D004221 ORTHO05D004998 4.3e-54 214.9 146 72.6
CAN.G282.46 Capsicum annuum HOM05D004221 ORTHO05D004998 5.7e-54 214.5 139 75.5
Manes.11G108400 Manihot esculenta HOM05D004221 ORTHO05D004998 9.7e-54 213.8 141 75.9
THA.LOC104818379 Tarenaya hassleriana HOM05D004221 ORTHO05D004998 9.7e-54 213.8 148 73.0
Lsat_1_v5_gn_4_64581 Lactuca sativa HOM05D004221 ORTHO05D004998 1.6e-53 213.0 141 75.9
RcHm_v2.0_Chr4g0391701 Rosa chinensis HOM05D004221 ORTHO05D004998 2.2e-53 212.6 122 89.3
Actinidia04331 Actinidia chinensis HOM05D004221 ORTHO05D004998 2.8e-53 212.2 140 75.0
CsaV3_5G020730 Cucumis sativus L. HOM05D004221 ORTHO05D004998 3.7e-53 211.8 145 72.4
Solyc01g008270.3 Solanum lycopersicum HOM05D004221 ORTHO05D004998 3.7e-53 211.8 138 75.4
Sopen01g003790 Solanum pennellii HOM05D004221 ORTHO05D004998 3.7e-53 211.8 138 75.4
Hma1.2p1_0513F.1_g169420 Hydrangea macrophylla HOM05D004221 ORTHO05D004998 4.8e-53 211.5 140 75.0
EL10Ac9g22978 Beta vulgaris HOM05D004221 ORTHO05D004998 6.3e-53 211.1 141 77.3
Duzib132G0545 Durio zibethinus HOM05D004221 ORTHO05D004998 6.3e-53 211.1 142 71.1
Duzib132G0858 Durio zibethinus HOM05D004221 ORTHO05D004998 6.3e-53 211.1 142 71.1
HanXRQChr04g0111871 Helianthus annuus HOM05D004221 ORTHO05D004998 6.3e-53 211.1 150 73.3
Lalb_Chr06g0163921 Lupinus albus HOM05D004221 ORTHO05D004998 6.3e-53 211.1 140 73.6
PSO017G5121 Papaver somniferum HOM05D004221 ORTHO05D004998 1.1e-52 210.3 139 77.0
Potri.007G074042 Populus trichocarpa HOM05D004221 ORTHO05D004998 1.1e-52 210.3 150 68.7
TWI74G0522 Tripterygium wilfordii HOM05D004221 ORTHO05D004998 1.4e-52 209.9 146 70.5
TAR629G3528 Trochodendron aralioides HOM05D004221 ORTHO05D004998 1.8e-52 209.5 141 75.2
Glyma.20G103300 Glycine max HOM05D004221 ORTHO05D004998 2.4e-52 209.1 140 74.3
PSO170G6579 Papaver somniferum HOM05D004221 ORTHO05D004998 2.4e-52 209.1 139 77.0
Sed0003164 Sechium edule HOM05D004221 ORTHO05D004998 2.4e-52 209.1 141 73.8
TAR629G0713 Trochodendron aralioides HOM05D004221 ORTHO05D004998 2.4e-52 209.1 141 75.2
Carub.0006s2106 Capsella rubella HOM05D004221 ORTHO05D004998 3.1e-52 208.8 144 72.2
AT5G23290 Arabidopsis thaliana HOM05D004221 ORTHO05D004998 4.1e-52 208.4 143 72.7
MSTRG.13679 Avicennia marina HOM05D004221 ORTHO05D004998 5.3e-52 208.0 146 72.6
HPP92_005060 Vanilla planifolia HOM05D004221 ORTHO05D004998 5.3e-52 208.0 141 71.6
AL6G34550 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 6.9e-52 207.6 143 72.7
AUR62017728 Chenopodium quinoa HOM05D004221 ORTHO05D004998 6.9e-52 207.6 141 78.0
Medtr1g114500 Medicago truncatula HOM05D004221 ORTHO05D004998 1.2e-51 206.8 140 72.1
Actinidia04067 Actinidia chinensis HOM05D004221 ORTHO05D004998 1.5e-51 206.5 140 73.6
Thhalv10005074m.g Eutrema salsugineum HOM05D004221 ORTHO05D004998 2.0e-51 206.1 149 71.1
TPR.G4058 Trifolium pratense HOM05D004221 ORTHO05D004998 4.5e-51 204.9 140 71.4
Sc26g0002050 Simmondsia chinensis HOM05D004221 ORTHO05D004998 7.7e-51 204.1 140 73.6
Aa31LG11G2750 Aethionema arabicum HOM05D004221 ORTHO05D004998 1.0e-50 203.8 147 70.1
CARHR190250 Cardamine hirsuta HOM05D004221 ORTHO05D004998 1.0e-50 203.8 143 71.3
Haze_11779 Corylus avellana HOM05D004221 ORTHO05D004998 1.0e-50 203.8 172 64.0
Lj5g0004809 Lotus japonicus HOM05D004221 ORTHO05D004998 1.0e-50 203.8 140 72.1
Psat6g233960 Pisum sativum HOM05D004221 ORTHO05D004998 1.0e-50 203.8 149 69.1
C09p07830 Brassica napus HOM05D004221 ORTHO05D004998 1.7e-50 203.0 143 70.6
BolC9t53699H Brassica oleracea HOM05D004221 ORTHO05D004998 1.7e-50 203.0 143 70.6
GSVIVG01026144001 Vitis vinifera HOM05D004221 ORTHO05D004998 1.7e-50 203.0 133 75.2
arahy.Tifrunner.gnm1.ann1.8BKN44 Arachis hypogaea HOM05D004221 ORTHO05D004998 2.2e-50 202.6 142 71.1
arahy.Tifrunner.gnm1.ann1.G8X8S8 Arachis hypogaea HOM05D004221 ORTHO05D004998 2.2e-50 202.6 142 71.1
arahy.Tifrunner.gnm1.ann1.VLL77W Arachis hypogaea HOM05D004221 ORTHO05D004998 2.2e-50 202.6 142 71.1
BcaC04g23487 Brassica carinata HOM05D004221 ORTHO05D004998 2.2e-50 202.6 143 70.6
A06p34250 Brassica napus HOM05D004221 ORTHO05D004998 2.2e-50 202.6 143 70.6
BraA06t26357Z Brassica rapa HOM05D004221 ORTHO05D004998 2.2e-50 202.6 143 70.6
Glyma.10G286000 Glycine max HOM05D004221 ORTHO05D004998 2.2e-50 202.6 140 72.1
Aqoxy3G04291 Aquilegia oxysepala HOM05D004221 ORTHO05D004998 2.9e-50 202.2 140 72.1
C07p44270 Brassica napus HOM05D004221 ORTHO05D004998 2.9e-50 202.2 143 69.9
BolC7t44950H Brassica oleracea HOM05D004221 ORTHO05D004998 3.8e-50 201.8 148 68.9
Os10g0488100 Oryza sativa ssp. japonica HOM05D004221 ORTHO05D004998 3.8e-50 201.8 147 70.1
ATR0618G284 Amborella trichopoda HOM05D004221 ORTHO05D004998 8.5e-50 200.7 141 71.6
Sp2g23860 Schrenkiella parvula HOM05D004221 ORTHO05D004998 8.5e-50 200.7 149 69.1
VMungo0720G0328 Vigna mungo HOM05D004221 ORTHO05D004998 8.5e-50 200.7 140 70.0
A09p07020 Brassica napus HOM05D004221 ORTHO05D004998 1.1e-49 200.3 146 68.5
BraA09t36350Z Brassica rapa HOM05D004221 ORTHO05D004998 1.1e-49 200.3 146 68.5
Ca_11255_v3 Cicer arietinum L. HOM05D004221 ORTHO05D004998 1.1e-49 200.3 140 71.4
Phvul.007G014900 Phaseolus vulgaris HOM05D004221 ORTHO05D004998 1.1e-49 200.3 140 70.0
Zm00001eb045320 Zea mays HOM05D004221 ORTHO05D004998 1.4e-49 199.9 146 69.2
ClCG01G008100 Citrullus lanatus HOM05D004221 ORTHO05D004998 2.5e-49 199.1 185 58.9
CDE02G2963 Ceratophyllum demersum HOM05D004221 ORTHO05D004998 2.1e-48 196.1 140 67.9
MBI06_g27498_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 2.1e-48 196.1 140 71.4
unitig_699.g19553 Utricularia gibba HOM05D004221 ORTHO05D004998 4.6e-48 194.9 147 68.7
BcaB04g19880 Brassica carinata HOM05D004221 ORTHO05D004998 1.4e-47 193.4 153 65.4
SGA_v2.0_scaffold256G45657 Striga asiatica HOM05D004221 ORTHO05D004998 4.4e-46 188.3 180 58.3
Sabra07G0062100 Salix brachista HOM05D004221 ORTHO05D004998 1.7e-45 186.4 199 51.3
DCAR_023468 Daucus carota HOM05D004221 ORTHO05D004998 4.8e-45 184.9 123 75.6
vmacro15987 Vaccinium macrocarpon HOM05D004221 ORTHO05D004998 1.4e-44 183.3 209 50.7
Duzib052G1226 Durio zibethinus HOM05D004221 ORTHO05D004998 1.8e-44 183.0 126 71.4
Nitab4.5_0000069g0160 Nicotiana tabacum HOM05D004221 ORTHO05D004998 1.8e-44 183.0 116 78.4
Cpa.g.sc60.76 Carica papaya HOM05D004221 ORTHO05D004998 4.1e-44 181.8 116 77.6
Duzib132G0203 Durio zibethinus HOM05D004221 ORTHO05D004998 9.1e-44 180.6 116 75.9
CDE04G0710 Ceratophyllum demersum HOM05D004221 ORTHO05D004998 1.2e-43 180.3 151 60.9
Lj3A847T45 Lonicera japonica HOM05D004221 ORTHO05D004998 1.2e-43 180.3 115 76.5
CSS0001435 Camellia sinensis var. sinensis HOM05D004221 ORTHO05D004998 2.0e-43 179.5 121 72.7
Atru.chr11.1114 Acer truncatum HOM05D004221 ORTHO05D004998 4.5e-43 178.3 121 74.4
Rhsim09G0069500 Rhododendron simsii HOM05D004221 ORTHO05D004998 4.5e-43 178.3 214 48.6
Cc00_g07040 Coffea canephora HOM05D004221 ORTHO05D004998 7.7e-43 177.6 117 76.1
Dinv17642 Davidia involucrata HOM05D004221 ORTHO05D004998 1.0e-42 177.2 118 74.6
Sabra05G0074200 Salix brachista HOM05D004221 ORTHO05D004998 3.2e-41 172.2 227 45.8
TAR371G0536 Trochodendron aralioides HOM05D004221 ORTHO05D004998 1.2e-40 170.2 135 65.9
Mapoly0041s0007 Marchantia polymorpha HOM05D004221 ORTHO05D004998 4.7e-40 168.3 142 57.7
SalBow2G0865 Salvia bowleyana HOM05D004221 ORTHO05D004998 4.7e-40 168.3 122 67.2
SEGI_18337 Sequoiadendron giganteum HOM05D004221 ORTHO05D004998 7.9e-40 167.5 141 56.7
SMO114G0084 Selaginella moellendorffii HOM05D004221 ORTHO05D004998 1.4e-39 166.8 137 56.9
Peaxi162Scf00021g02223 Petunia axillaris HOM05D004221 ORTHO05D004998 1.8e-39 166.4 138 63.8
AL2G24680 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 2.3e-39 166.0 116 71.6
AL8G16830 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 2.3e-39 166.0 116 71.6
AagrBONN_evm.TU.Sc2ySwM_117.4013 Anthoceros agrestis HOM05D004221 ORTHO05D004998 6.7e-39 164.5 142 55.6
Pp3c1_32320 Physcomitrium patens HOM05D004221 ORTHO05D004998 8.8e-39 164.1 136 59.6
SGA_v2.0_scaffold358G49836 Striga asiatica HOM05D004221 ORTHO05D004998 2.9e-34 149.1 155 55.5
Ah.01g012690 Amaranthus hybridus HOM05D004221 ORTHO05D004998 1.2e-32 143.7 88 83.0
Oeu013195.1 Olea europaea HOM05D004221 ORTHO05D004998 8.8e-31 137.5 87 79.3
AUR62032946 Chenopodium quinoa HOM05D004221 ORTHO05D004998 4.4e-30 135.2 88 78.4
RcHm_v2.0_Chr3g0478071 Rosa chinensis HOM05D004221 ORTHO05D004998 7.5e-30 134.4 78 91.0
RcHm_v2.0_Chr5g0067401 Rosa chinensis HOM05D004221 ORTHO05D004998 7.5e-30 134.4 78 91.0
RcHm_v2.0_Chr6g0266371 Rosa chinensis HOM05D004221 ORTHO05D004998 7.5e-30 134.4 78 91.0
Oeu041209.1 Olea europaea HOM05D004221 ORTHO05D004998 2.0e-27 126.3 94 73.4
RcHm_v2.0_Chr6g0274601 Rosa chinensis HOM05D004221 ORTHO05D004998 1.0e-26 124.0 72 91.7
Lj9A327T34 Lonicera japonica HOM05D004221 ORTHO05D004998 1.3e-26 123.6 136 52.2
CBR_g19844 Chara braunii HOM05D002142 ORTHO05D001189 9.4e-25 117.5 146 43.2
SHI21211 Sapria himalayana HOM05D004221 ORTHO05D004998 1.6e-24 116.7 200 37.5
SEGI_37490 Sequoiadendron giganteum HOM05D004221 ORTHO05D004998 6.1e-24 114.8 82 61.0
MELO3C000273.2 Cucumis melo HOM05D004221 ORTHO05D004998 8.0e-24 114.4 70 78.6
MCO07G569 Micromonas commoda HOM05D004221 ORTHO05D004998 9.8e-22 107.5 137 39.4
MELO3C033736.2 Cucumis melo HOM05D004221 ORTHO05D004998 3.1e-20 102.4 64 78.1
A02p41030 Brassica napus HOM05D004221 ORTHO05D004998 1.2e-19 100.5 73 63.0
FAN03G3288 Fragaria x ananassa HOM05D004221 ORTHO05D205401 4.7e-16 88.6 204 39.7
Gorai.002G209700 Gossypium raimondii HOM05D004221 ORTHO05D004998 8.9e-15 84.3 59 62.7
Gohir.D01G168833 Gossypium hirsutum HOM05D004221 ORTHO05D004998 1.5e-14 83.6 65 58.5
PRCOL_00006790 Prasinoderma coloniale HOM05D004221 ORTHO05D004998 9.8e-14 80.9 142 33.1
Gohir.A01G178033 Gossypium hirsutum HOM05D004221 ORTHO05D004998 2.8e-13 79.3 67 55.2
MBI19_g48155_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 6.3e-13 78.2 61 67.2
MBI19_g31737_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 4.1e-12 75.5 61 65.6
Cre12.g523150 Chlamydomonas reinhardtii HOM05D004221 ORTHO05D004998 5.4e-12 75.1 134 29.9
Oeu013194.1 Olea europaea HOM05D004221 ORTHO05D004998 2.7e-11 72.8 49 65.3
Sed0018067 Sechium edule HOM05D004221 ORTHO05D004998 2.7e-11 72.8 54 68.5
AL1G29290 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 5.9e-11 71.6 55 69.1
AL8G24780 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 5.9e-11 71.6 55 69.1
SalBow3G1738 Salvia bowleyana HOM05D004221 ORTHO05D004998 3.0e-07 59.3 53 49.1
SalBow6G4331 Salvia bowleyana HOM05D004221 ORTHO05D004998 7.5e-06 54.7 52 53.8


User provided reference genes

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