Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G4095 Fragaria x ananassa HOM05D006960 ORTHO05D008699 1.7e-120 436.0 229 100.0
FAN10G0984 Fragaria x ananassa HOM05D006960 ORTHO05D008699 9.6e-119 430.3 229 98.7
FAN01G3090 Fragaria x ananassa HOM05D006960 ORTHO05D008699 1.4e-117 426.4 226 98.7
FAN06G3195 Fragaria x ananassa HOM05D006960 ORTHO05D008699 1.8e-117 426.0 229 98.3
FvH4_7g16680 Fragaria vesca HOM05D006960 ORTHO05D008699 2.4e-117 425.6 229 98.3
FAN06G2002 Fragaria x ananassa HOM05D006960 ORTHO05D008699 2.0e-116 422.5 228 97.4
RcHm_v2.0_Chr1g0359831 Rosa chinensis HOM05D006960 ORTHO05D008699 6.4e-107 391.0 230 91.7
Prupe.2G189500 Prunus persica HOM05D006960 ORTHO05D008699 1.3e-91 340.1 229 80.8
MD07G1150800 Malus domestica HOM05D006960 ORTHO05D008699 5.7e-87 324.7 229 77.7
CANSAT56G1276 Cannabis sativa HOM05D006960 ORTHO05D008699 1.1e-85 320.5 227 75.8
Haze_15666 Corylus avellana HOM05D000451 ORTHO05D000351 2.4e-85 319.3 226 75.2
Ciclev10022060m.g Citrus clementina HOM05D006960 ORTHO05D008699 7.7e-84 314.3 226 72.1
Atru.chr5.678 Acer truncatum HOM05D006960 ORTHO05D008699 1.8e-80 303.1 226 72.6
CSS0036785 Camellia sinensis var. sinensis HOM05D006960 ORTHO05D008699 6.7e-80 301.2 226 71.7
QL04p060559 Quercus lobata HOM05D006960 ORTHO05D008699 6.7e-80 301.2 226 72.1
CSS0028122 Camellia sinensis var. sinensis HOM05D006960 ORTHO05D008699 8.8e-80 300.8 226 72.1
TAR629G1073 Trochodendron aralioides HOM05D006960 ORTHO05D008699 4.4e-79 298.5 229 70.3
ClCG09G009460 Citrullus lanatus HOM05D006960 ORTHO05D008699 8.2e-78 294.3 224 70.1
Thecc.01G341400 Theobroma cacao HOM05D006960 ORTHO05D008699 5.3e-77 291.6 249 66.7
Gohir.D11G102000 Gossypium hirsutum HOM05D006960 ORTHO05D008699 7.0e-77 291.2 249 65.1
Lalb_Chr06g0163941 Lupinus albus HOM05D006960 ORTHO05D008699 7.0e-77 291.2 223 71.3
GSVIVG01027159001 Vitis vinifera HOM05D006960 ORTHO05D008699 9.1e-77 290.8 214 73.8
Actinidia20248 Actinidia chinensis HOM05D000567 ORTHO05D001981 1.2e-76 290.4 212 71.7
Gorai.007G109000 Gossypium raimondii HOM05D006960 ORTHO05D008699 2.0e-76 289.7 249 64.7
vmacro12673 Vaccinium macrocarpon HOM05D006960 ORTHO05D008699 3.5e-76 288.9 227 68.3
MELO3C024139.2 Cucumis melo HOM05D006960 ORTHO05D008699 5.9e-76 288.1 224 69.2
TWI14G0597 Tripterygium wilfordii HOM05D006960 ORTHO05D008699 1.0e-75 287.3 246 64.2
COL.COLO4_21448 Corchorus olitorius HOM05D006960 ORTHO05D008699 1.3e-75 287.0 246 64.6
Gohir.A11G097200 Gossypium hirsutum HOM05D006960 ORTHO05D008699 2.2e-75 286.2 244 64.3
Eucgr.E00049 Eucalyptus grandis HOM05D006960 ORTHO05D008699 8.5e-75 284.3 229 67.7
Sed0021558 Sechium edule HOM05D006960 ORTHO05D008699 8.5e-75 284.3 225 67.1
Potri.014G099500 Populus trichocarpa HOM05D006960 ORTHO05D008699 4.2e-74 282.0 243 63.0
Rhsim01G0172900 Rhododendron simsii HOM05D006960 ORTHO05D008699 9.4e-74 280.8 226 68.1
Manes.05G022300 Manihot esculenta HOM05D006960 ORTHO05D008699 4.7e-73 278.5 247 61.5
Rhsim04G0222700 Rhododendron simsii HOM05D006960 ORTHO05D008699 4.7e-73 278.5 224 68.3
DCAR_021504 Daucus carota HOM05D006960 ORTHO05D008699 6.1e-73 278.1 218 70.6
Cpa.g.sc46.111 Carica papaya HOM05D006960 ORTHO05D008699 8.0e-73 277.7 229 66.4
EL10Ac1g00259 Beta vulgaris HOM05D006960 ORTHO05D008699 1.4e-72 276.9 226 65.5
Sc01g0002630 Simmondsia chinensis HOM05D000016 ORTHO05D007083 1.8e-72 276.6 229 64.6
ECA236G0577 Erigeron canadensis HOM05D006960 ORTHO05D008699 6.7e-72 274.6 219 69.4
Psat6g234040 Pisum sativum HOM05D006960 ORTHO05D008699 6.7e-72 274.6 229 67.2
PGR142G3971 Punica granatum HOM05D006960 ORTHO05D008699 6.7e-72 274.6 227 67.8
Cc01_g12480 Coffea canephora HOM05D006960 ORTHO05D008699 8.8e-72 274.2 223 66.8
Aqoxy6G00316 Aquilegia oxysepala HOM05D006960 ORTHO05D008699 1.5e-71 273.5 215 67.9
Glyma.20G102700 Glycine max HOM05D006960 ORTHO05D008699 1.5e-71 273.5 217 69.1
AUR62004502 Chenopodium quinoa HOM05D006960 ORTHO05D008699 2.0e-71 273.1 223 64.6
Ca_11259_v3 Cicer arietinum L. HOM05D006960 ORTHO05D008699 2.6e-71 272.7 229 66.8
Sopen05g029010 Solanum pennellii HOM05D006960 ORTHO05D008699 2.6e-71 272.7 222 68.5
Solyc05g050570.3 Solanum lycopersicum HOM05D006960 ORTHO05D008699 3.3e-71 272.3 222 68.5
MSTRG.17349 Avicennia marina HOM05D006960 ORTHO05D008699 4.4e-71 271.9 214 67.8
BraA09t42243Z Brassica rapa HOM05D006960 ORTHO05D008699 4.4e-71 271.9 233 65.2
Nitab4.5_0000258g0220 Nicotiana tabacum HOM05D006960 ORTHO05D008699 4.4e-71 271.9 224 68.8
C08p53630 Brassica napus HOM05D006960 ORTHO05D008699 9.7e-71 270.8 229 65.9
Nitab4.5_0004506g0020 Nicotiana tabacum HOM05D006960 ORTHO05D008699 9.7e-71 270.8 224 68.8
A09p69060 Brassica napus HOM05D006960 ORTHO05D008699 1.3e-70 270.4 229 65.9
BolC8t52877H Brassica oleracea HOM05D006960 ORTHO05D008699 1.3e-70 270.4 237 65.0
Lj5g0001318 Lotus japonicus HOM05D006960 ORTHO05D008699 1.3e-70 270.4 222 67.1
Medtr1g114590 Medicago truncatula HOM05D006960 ORTHO05D008699 1.7e-70 270.0 231 66.2
Medtr5g015740 Medicago truncatula HOM05D006960 ORTHO05D008699 3.7e-70 268.9 231 66.2
PGSC0003DMG400007011 Solanum tuberosum HOM05D006960 ORTHO05D008699 6.3e-70 268.1 224 67.4
Oeu007886.1 Olea europaea HOM05D006960 ORTHO05D008699 1.1e-69 267.3 213 67.1
Oeu014974.1 Olea europaea HOM05D006960 ORTHO05D008699 1.1e-69 267.3 213 67.1
Migut.B01880 Erythranthe guttata HOM05D006960 ORTHO05D008699 1.4e-69 266.9 222 65.3
Thhalv10008544m.g Eutrema salsugineum HOM05D006960 ORTHO05D008699 1.8e-69 266.5 247 61.9
Lsat_1_v5_gn_8_13101 Lactuca sativa HOM05D006960 ORTHO05D008699 2.4e-69 266.2 224 66.1
Phvul.007G014400 Phaseolus vulgaris HOM05D006960 ORTHO05D008699 4.1e-69 265.4 217 69.1
CAN.G1178.29 Capsicum annuum HOM05D006960 ORTHO05D008699 7.0e-69 264.6 215 67.4
VMungo0720G2201 Vigna mungo HOM05D006960 ORTHO05D008699 7.0e-69 264.6 217 67.7
Sp1g01000 Schrenkiella parvula HOM05D006960 ORTHO05D008699 1.2e-68 263.8 240 62.5
HanXRQChr06g0170731 Helianthus annuus HOM05D006960 ORTHO05D008699 2.6e-68 262.7 219 65.8
Carub.0001s0093 Capsella rubella HOM05D006960 ORTHO05D008699 4.5e-68 261.9 250 60.0
CARHR001180 Cardamine hirsuta HOM05D006960 ORTHO05D008699 1.3e-67 260.4 242 60.7
Sabra14G0073000 Salix brachista HOM05D006960 ORTHO05D008699 1.3e-67 260.4 235 61.7
Dinv22299 Davidia involucrata HOM05D006960 ORTHO05D008699 2.2e-67 259.6 213 68.1
PSO063G6262 Papaver somniferum HOM05D006960 ORTHO05D008699 2.9e-67 259.2 231 61.0
TPR.G4075 Trifolium pratense HOM05D006960 ORTHO05D008699 3.8e-67 258.8 222 66.7
Peaxi162Scf00716g00022 Petunia axillaris HOM05D006960 ORTHO05D008699 6.5e-67 258.1 202 69.3
MBI06_g44795_MAGBIO Magnolia biondii HOM05D006960 ORTHO05D008699 1.5e-66 256.9 225 62.7
AL1G11170 Arabidopsis lyrata HOM05D006960 ORTHO05D008699 2.5e-66 256.1 181 75.7
AT1G01290 Arabidopsis thaliana HOM05D006960 ORTHO05D008699 7.2e-66 254.6 233 61.8
Aqoxy3G01066 Aquilegia oxysepala HOM05D006960 ORTHO05D008699 2.7e-65 252.7 199 66.3
Nn8g41032 Nelumbo nucifera HOM05D006960 ORTHO05D008699 3.6e-65 252.3 201 67.7
Aa31LG5G970 Aethionema arabicum HOM05D000451 ORTHO05D000351 1.4e-64 250.4 207 66.7
CAN.G1385.4 Capsicum annuum HOM05D006960 ORTHO05D008699 4.0e-64 248.8 196 68.9
SGA_v2.0_scaffold22G09984 Striga asiatica HOM05D006960 ORTHO05D008699 5.2e-64 248.4 220 64.1
PSO170G4910 Papaver somniferum HOM05D006960 ORTHO05D008699 1.2e-63 247.3 222 61.3
SalBow3G0783 Salvia bowleyana HOM05D006960 ORTHO05D008699 2.0e-63 246.5 217 62.7
Hund16718 Selenicereus undatus HOM05D006960 ORTHO05D008699 2.8e-62 242.7 203 63.1
Zm00001eb080710 Zea mays HOM05D006960 ORTHO05D008699 7.0e-61 238.0 201 61.7
Os04g0460500 Oryza sativa ssp. japonica HOM05D006960 ORTHO05D008699 9.1e-61 237.7 201 62.7
arahy.Tifrunner.gnm1.ann1.EW69V8 Arachis hypogaea HOM05D006471 ORTHO05D008157 2.2e-59 233.0 178 70.2
arahy.Tifrunner.gnm1.ann1.CCVT8N Arachis hypogaea HOM05D006960 ORTHO05D008699 2.9e-59 232.6 222 61.7
unitig_899.g14796 Utricularia gibba HOM05D006960 ORTHO05D008699 2.3e-56 223.0 202 59.4
HPP92_002925 Vanilla planifolia HOM05D006960 ORTHO05D008699 3.7e-54 215.7 155 70.3
ATR0602G026 Amborella trichopoda HOM05D006960 ORTHO05D008699 2.4e-53 213.0 195 57.9
Mapoly0053s0024 Marchantia polymorpha HOM05D006960 ORTHO05D008699 1.8e-48 196.8 238 50.4
AUR62014969 Chenopodium quinoa HOM05D006960 ORTHO05D008699 7.5e-47 191.4 223 49.8
SMO351G0341 Selaginella moellendorffii HOM05D006960 ORTHO05D008699 9.8e-47 191.0 193 56.5
Pp3c20_11370 Physcomitrium patens HOM05D006960 ORTHO05D008699 3.7e-46 189.1 235 48.1
CsaV3_7G025390 Cucumis sativus L. HOM05D006960 ORTHO05D008699 1.6e-41 173.7 153 62.7
MCO01G113 Micromonas commoda HOM05D006960 ORTHO05D008699 1.6e-41 173.7 176 55.7
CDE10G0236 Ceratophyllum demersum HOM05D006960 ORTHO05D008699 1.0e-40 171.0 213 49.8
FAN03G0019 Fragaria x ananassa HOM05D006960 ORTHO05D008699 1.5e-39 167.2 229 48.9
AUR62023452 Chenopodium quinoa HOM05D000040 ORTHO05D000759 9.8e-39 164.5 202 49.0
Cre08.g361050 Chlamydomonas reinhardtii HOM05D006960 ORTHO05D008699 2.9e-38 162.9 191 50.3
CBR_g23014 Chara braunii HOM05D006960 ORTHO05D008699 8.3e-38 161.4 156 54.5
HPP92_028636 Vanilla planifolia HOM05D006960 ORTHO05D008699 3.0e-35 152.9 226 44.2
CDE10G0916 Ceratophyllum demersum HOM05D000108 ORTHO05D001781 6.2e-33 145.2 112 66.1
VMungo0964G0001 Vigna mungo HOM05D006960 ORTHO05D008699 6.8e-32 141.7 152 49.3
TAR636G2744 Trochodendron aralioides HOM05D006960 ORTHO05D008699 8.1e-25 118.2 104 58.7
Cpa.g.sc96.27 Carica papaya HOM05D006960 ORTHO05D008699 1.5e-23 114.0 156 45.5
Cfa022703 Carpinus fangiana HOM05D006960 ORTHO05D008699 2.9e-22 109.8 165 43.0
CiPaw.01G076800 Carya illinoinensis HOM05D006960 ORTHO05D008699 8.3e-22 108.2 105 59.0
Haze_27006 Corylus avellana HOM05D006202 ORTHO05D008699 8.1e-17 91.7 115 40.9
PRCOL_00000953 Prasinoderma coloniale HOM05D006960 ORTHO05D008699 1.3e-14 84.3 218 30.7
Medtr5g015730 Medicago truncatula HOM05D006960 ORTHO05D008699 1.2e-07 61.2 40 72.5


User provided reference genes

Program Settings