Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G1296 Fragaria x ananassa HOM05D004660 ORTHO05D005474 3.5e-82 308.1 146 100.0
FAN10G4080 Fragaria x ananassa HOM05D004660 ORTHO05D005474 3.5e-82 308.1 146 100.0
FvH4_7g33300 Fragaria vesca HOM05D004660 ORTHO05D005474 2.5e-80 302.0 146 97.3
FAN01G2536 Fragaria x ananassa HOM05D004660 ORTHO05D005474 4.3e-80 301.2 146 97.3
RcHm_v2.0_Chr1g0383281 Rosa chinensis HOM05D004660 ORTHO05D005474 1.8e-78 295.8 147 96.6
FAN03G0846 Fragaria x ananassa HOM05D004660 ORTHO05D005474 9.9e-77 290.0 140 97.9
Prupe.2G321900 Prunus persica HOM05D004660 ORTHO05D005474 7.3e-72 273.9 146 87.7
MD01G1231200 Malus domestica HOM05D004660 ORTHO05D005474 1.3e-68 263.1 146 84.2
Cpa.g.sc3.184 Carica papaya HOM05D004660 ORTHO05D005474 2.9e-68 261.9 146 81.5
Duzib205G1429 Durio zibethinus HOM05D004660 ORTHO05D005474 7.8e-66 253.8 147 78.2
Glyma.04G225900 Glycine max HOM05D004660 ORTHO05D005474 1.0e-65 253.4 147 79.6
Thecc.03G211800 Theobroma cacao HOM05D004660 ORTHO05D005474 1.0e-65 253.4 147 78.9
Haze_00331 Corylus avellana HOM05D004660 ORTHO05D005474 1.3e-65 253.1 146 79.5
CiPaw.05G208600 Carya illinoinensis HOM05D004660 ORTHO05D005474 2.3e-65 252.3 146 78.1
Lj1g0017846 Lotus japonicus HOM05D004660 ORTHO05D005474 5.1e-65 251.1 146 78.1
GSVIVG01038677001 Vitis vinifera HOM05D004660 ORTHO05D005474 5.1e-65 251.1 146 77.4
arahy.Tifrunner.gnm1.ann1.6FR5WN Arachis hypogaea HOM05D004660 ORTHO05D005474 6.6e-65 250.8 146 77.4
QL09p006015 Quercus lobata HOM05D004660 ORTHO05D005474 6.6e-65 250.8 146 80.8
Glyma.06G138900 Glycine max HOM05D004660 ORTHO05D005474 8.7e-65 250.4 147 78.2
VMungo0647G0407 Vigna mungo HOM05D004660 ORTHO05D005474 1.1e-64 250.0 146 76.0
Phvul.008G188100 Phaseolus vulgaris HOM05D004660 ORTHO05D005474 1.5e-64 249.6 146 76.7
CiPaw.06G038500 Carya illinoinensis HOM05D004660 ORTHO05D005474 3.3e-64 248.4 147 77.6
Atru.chr12.2504 Acer truncatum HOM05D004660 ORTHO05D005474 4.3e-64 248.1 146 77.4
Atru.chr12.2527 Acer truncatum HOM05D004660 ORTHO05D005474 4.3e-64 248.1 146 77.4
Hma1.2p1_0115F.1_g055760 Hydrangea macrophylla HOM05D004660 ORTHO05D005474 5.6e-64 247.7 146 77.4
Glyma.14G188500 Glycine max HOM05D004660 ORTHO05D005474 9.6e-64 246.9 146 75.3
Gohir.D08G117700 Gossypium hirsutum HOM05D004660 ORTHO05D005474 9.6e-64 246.9 147 77.6
Gorai.004G126200 Gossypium raimondii HOM05D004660 ORTHO05D005474 9.6e-64 246.9 147 77.6
VMungo1309G2317 Vigna mungo HOM05D004660 ORTHO05D005474 1.3e-63 246.5 148 77.7
ClCG07G009740 Citrullus lanatus HOM05D004660 ORTHO05D005474 2.1e-63 245.7 146 74.7
Sed0002848 Sechium edule HOM05D004660 ORTHO05D005474 2.1e-63 245.7 146 73.3
TPR.G35910 Trifolium pratense HOM05D004660 ORTHO05D005474 4.8e-63 244.6 146 77.4
Glyma.02G221000 Glycine max HOM05D004660 ORTHO05D005474 6.2e-63 244.2 146 75.3
Aqoxy5G04391 Aquilegia oxysepala HOM05D004660 ORTHO05D005474 8.1e-63 243.8 148 77.0
COL.COLO4_14397 Corchorus olitorius HOM05D004660 ORTHO05D005474 8.1e-63 243.8 140 78.6
CsaV3_4G009710 Cucumis sativus L. HOM05D004660 ORTHO05D005474 8.1e-63 243.8 146 74.0
LjContig00312_ERROPOS870357g0003416 Lotus japonicus HOM05D004660 ORTHO05D005474 8.1e-63 243.8 147 76.9
Ca_16837_v3 Cicer arietinum L. HOM05D004660 ORTHO05D005474 1.1e-62 243.4 144 75.7
Sed0024142 Sechium edule HOM05D004660 ORTHO05D005474 1.1e-62 243.4 146 73.3
Gohir.A08G106300 Gossypium hirsutum HOM05D004660 ORTHO05D005474 1.4e-62 243.0 147 76.2
CSS0012455 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 2.4e-62 242.3 146 74.0
Phvul.009G040000 Phaseolus vulgaris HOM05D004660 ORTHO05D005474 3.1e-62 241.9 148 77.0
Ciclev10022731m.g Citrus clementina HOM05D004660 ORTHO05D005474 4.0e-62 241.5 146 75.3
MELO3C024844.2 Cucumis melo HOM05D004660 ORTHO05D005474 4.0e-62 241.5 146 73.3
Nitab4.5_0007121g0060 Nicotiana tabacum HOM05D004660 ORTHO05D005474 5.3e-62 241.1 146 74.0
RcHm_v2.0_Chr4g0433201 Rosa chinensis HOM05D004660 ORTHO05D005474 5.3e-62 241.1 123 92.7
Nitab4.5_0000021g0160 Nicotiana tabacum HOM05D004660 ORTHO05D005474 6.9e-62 240.7 146 74.0
Potri.015G000900 Populus trichocarpa HOM05D004660 ORTHO05D005474 6.9e-62 240.7 148 76.4
LjContig00155g0012911 Lotus japonicus HOM05D004660 ORTHO05D005474 9.0e-62 240.4 146 76.0
Manes.05G195800 Manihot esculenta HOM05D004660 ORTHO05D005474 9.0e-62 240.4 146 72.6
CANSAT21G0927 Cannabis sativa HOM05D004660 ORTHO05D005474 1.2e-61 240.0 150 76.7
Lalb_Chr10g0102981 Lupinus albus HOM05D004660 ORTHO05D005474 1.2e-61 240.0 146 76.0
Solyc03g079970.1 Solanum lycopersicum HOM05D004660 ORTHO05D005474 1.2e-61 240.0 146 73.3
Sopen03g021700 Solanum pennellii HOM05D004660 ORTHO05D005474 1.2e-61 240.0 146 73.3
PGSC0003DMG400000574 Solanum tuberosum HOM05D004660 ORTHO05D005474 1.2e-61 240.0 146 73.3
TWI39G0024 Tripterygium wilfordii HOM05D004660 ORTHO05D005474 1.2e-61 240.0 146 75.3
Sc19g0000390 Simmondsia chinensis HOM05D004660 ORTHO05D005474 1.5e-61 239.6 146 75.3
THA.LOC104814957 Tarenaya hassleriana HOM05D004660 ORTHO05D005474 1.5e-61 239.6 147 74.8
TPR.G27918 Trifolium pratense HOM05D004660 ORTHO05D005474 2.0e-61 239.2 148 75.7
Psat2g060520 Pisum sativum HOM05D004660 ORTHO05D005474 2.6e-61 238.8 147 76.2
Psat7g096840 Pisum sativum HOM05D004660 ORTHO05D005474 2.6e-61 238.8 147 76.2
TAR629G0239 Trochodendron aralioides HOM05D004660 ORTHO05D005474 2.6e-61 238.8 146 74.0
Migut.F00125 Erythranthe guttata HOM05D004660 ORTHO05D005474 3.4e-61 238.4 146 75.3
MBI12_g37476_MAGBIO Magnolia biondii HOM05D004660 ORTHO05D005474 5.8e-61 237.7 144 74.3
MSTRG.26954 Avicennia marina HOM05D004660 ORTHO05D005474 1.3e-60 236.5 146 71.9
CAN.G303.55 Capsicum annuum HOM05D004660 ORTHO05D005474 1.3e-60 236.5 146 73.3
DCAR_014568 Daucus carota HOM05D004660 ORTHO05D005474 1.7e-60 236.1 146 72.6
Potri.012G004900 Populus trichocarpa HOM05D004660 ORTHO05D005474 1.7e-60 236.1 149 74.5
vmacro10172 Vaccinium macrocarpon HOM05D004660 ORTHO05D005474 1.7e-60 236.1 146 73.3
DCAR_020388 Daucus carota HOM05D004660 ORTHO05D005474 3.8e-60 235.0 146 72.6
TWI23G0412 Tripterygium wilfordii HOM05D004660 ORTHO05D005474 3.8e-60 235.0 146 74.0
Thhalv10010801m.g Eutrema salsugineum HOM05D004660 ORTHO05D005474 4.9e-60 234.6 147 72.1
Oeu055424.1 Olea europaea HOM05D004660 ORTHO05D005474 8.4e-60 233.8 146 70.5
Psat5g071200 Pisum sativum HOM05D004660 ORTHO05D005474 8.4e-60 233.8 148 75.0
Rhsim09G0211000 Rhododendron simsii HOM05D004660 ORTHO05D005474 1.1e-59 233.4 146 71.9
THA.LOC104803315 Tarenaya hassleriana HOM05D004660 ORTHO05D005474 1.1e-59 233.4 147 72.1
Lj1P1031T30 Lonicera japonica HOM05D004660 ORTHO05D005474 1.4e-59 233.0 150 72.7
EL10Ac3g05134 Beta vulgaris HOM05D004660 ORTHO05D005474 1.9e-59 232.6 146 69.9
Gorai.008G263000 Gossypium raimondii HOM05D004660 ORTHO05D005474 2.4e-59 232.3 145 72.4
SGA_v2.0_scaffold44G16872 Striga asiatica HOM05D004660 ORTHO05D005474 2.4e-59 232.3 147 72.1
Gohir.A12G244500 Gossypium hirsutum HOM05D004660 ORTHO05D005474 3.2e-59 231.9 143 73.4
Medtr5g068660 Medicago truncatula HOM05D004660 ORTHO05D005474 3.2e-59 231.9 148 75.0
AUR62005951 Chenopodium quinoa HOM05D004660 ORTHO05D005474 4.2e-59 231.5 146 69.9
Thhalv10005081m.g Eutrema salsugineum HOM05D004660 ORTHO05D005474 5.4e-59 231.1 149 72.5
BraA06t25770Z Brassica rapa HOM05D004660 ORTHO05D005474 7.1e-59 230.7 146 69.9
Gohir.D12G245400 Gossypium hirsutum HOM05D004660 ORTHO05D005474 7.1e-59 230.7 145 72.4
BcaB02g09594 Brassica carinata HOM05D004660 ORTHO05D005474 9.3e-59 230.3 146 69.9
Ca_05550_v3 Cicer arietinum L. HOM05D004660 ORTHO05D005474 9.3e-59 230.3 146 74.0
SGA_v2.0_scaffold18G08494 Striga asiatica HOM05D004660 ORTHO05D005474 9.3e-59 230.3 143 72.7
Aa31LG11G3870 Aethionema arabicum HOM05D004660 ORTHO05D005474 1.6e-58 229.6 146 72.6
arahy.Tifrunner.gnm1.ann1.N0NSHG Arachis hypogaea HOM05D004660 ORTHO05D005474 1.6e-58 229.6 133 78.9
AUR62028114 Chenopodium quinoa HOM05D004660 ORTHO05D005474 1.6e-58 229.6 146 69.2
Hma1.2p1_0415F.1_g148340 Hydrangea macrophylla HOM05D004660 ORTHO05D005474 1.6e-58 229.6 148 70.3
SalBow4G0874 Salvia bowleyana HOM05D004660 ORTHO05D005474 2.1e-58 229.2 146 71.2
Sp2g22770 Schrenkiella parvula HOM05D004660 ORTHO05D005474 2.7e-58 228.8 149 71.8
Carub.0006s2247 Capsella rubella HOM05D004660 ORTHO05D005474 3.5e-58 228.4 149 72.5
CSS0035101 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 4.6e-58 228.0 146 70.5
Sp5g12560 Schrenkiella parvula HOM05D004660 ORTHO05D005474 2.3e-57 225.7 146 68.5
Peaxi162Scf01026g00258 Petunia axillaris HOM05D004660 ORTHO05D005474 6.7e-57 224.2 137 73.0
AL5G29390 Arabidopsis lyrata HOM05D004660 ORTHO05D005474 8.7e-57 223.8 147 69.4
A06p28270 Brassica napus HOM05D004660 ORTHO05D005474 8.7e-57 223.8 146 68.5
Ah.13g071030 Amaranthus hybridus HOM05D004660 ORTHO05D005474 1.1e-56 223.4 146 68.5
Migut.F00969 Erythranthe guttata HOM05D004660 ORTHO05D005474 1.1e-56 223.4 147 69.4
AL6G36220 Arabidopsis lyrata HOM05D004660 ORTHO05D005474 2.5e-56 222.2 148 72.3
BcaNung01246 Brassica carinata HOM05D004660 ORTHO05D005474 4.3e-56 221.5 150 72.0
CARHR188840 Cardamine hirsuta HOM05D004660 ORTHO05D005474 4.3e-56 221.5 150 70.7
Manes.01G050300 Manihot esculenta HOM05D004660 ORTHO05D005474 4.3e-56 221.5 125 77.6
HanXRQChr01g0002691 Helianthus annuus HOM05D004660 ORTHO05D005474 5.6e-56 221.1 151 68.2
Ah.13g069080 Amaranthus hybridus HOM05D004660 ORTHO05D005474 7.4e-56 220.7 146 67.1
Oeu061046.1 Olea europaea HOM05D004660 ORTHO05D005474 1.3e-55 219.9 146 66.4
AT5G24610 Arabidopsis thaliana HOM05D004660 ORTHO05D005474 2.1e-55 219.2 147 72.8
THA.LOC104799676 Tarenaya hassleriana HOM05D004660 ORTHO05D005474 2.8e-55 218.8 147 67.3
Lj3P891T43 Lonicera japonica HOM05D004660 ORTHO05D005474 2.4e-54 215.7 146 67.8
BcaC03g17953 Brassica carinata HOM05D004660 ORTHO05D005474 5.3e-54 214.5 150 70.7
C02p60130 Brassica napus HOM05D004660 ORTHO05D005474 5.3e-54 214.5 150 70.7
BolC2t12069H Brassica oleracea HOM05D004660 ORTHO05D005474 5.3e-54 214.5 150 70.7
BcaC09g49961 Brassica carinata HOM05D004660 ORTHO05D005474 6.9e-54 214.2 147 69.4
A02p40180 Brassica napus HOM05D004660 ORTHO05D005474 6.9e-54 214.2 150 70.7
A06p35410 Brassica napus HOM05D004660 ORTHO05D005474 6.9e-54 214.2 150 70.0
BolC1t03007H Brassica oleracea HOM05D004660 ORTHO05D005474 6.9e-54 214.2 147 69.4
BraA06t26464Z Brassica rapa HOM05D004660 ORTHO05D005474 6.9e-54 214.2 150 70.0
unitig_92.g28236 Utricularia gibba HOM05D004660 ORTHO05D005474 9.0e-54 213.8 146 65.8
ATR0579G143 Amborella trichopoda HOM05D004660 ORTHO05D005474 1.5e-53 213.0 147 67.3
A01p24630 Brassica napus HOM05D004660 ORTHO05D005474 1.5e-53 213.0 147 68.7
BraA01t02375Z Brassica rapa HOM05D004660 ORTHO05D005474 1.5e-53 213.0 147 68.7
BraA02t08983Z Brassica rapa HOM05D004660 ORTHO05D005474 1.5e-53 213.0 150 70.0
BcaB07g29917 Brassica carinata HOM05D004660 ORTHO05D005474 4.5e-53 211.5 150 70.7
AT3G49550 Arabidopsis thaliana HOM05D004660 ORTHO05D005474 5.8e-53 211.1 150 68.7
C03p65490 Brassica napus HOM05D004660 ORTHO05D005474 1.3e-52 209.9 131 68.7
BcaNung02008 Brassica carinata HOM05D004660 ORTHO05D005474 6.4e-52 207.6 148 69.6
C07p43100 Brassica napus HOM05D004660 ORTHO05D005474 6.4e-52 207.6 148 69.6
BolC7t44836H Brassica oleracea HOM05D004660 ORTHO05D005474 6.4e-52 207.6 148 69.6
Zm00001eb220600 Zea mays HOM05D004660 ORTHO05D005474 3.2e-51 205.3 146 65.8
Carub.0005s1588 Capsella rubella HOM05D004660 ORTHO05D005474 5.5e-51 204.5 139 66.2
unitig_37.g11998 Utricularia gibba HOM05D004660 ORTHO05D005474 7.1e-51 204.1 146 63.0
CARHR158560 Cardamine hirsuta HOM05D004660 ORTHO05D005474 9.3e-51 203.8 151 63.6
Nn3g18745 Nelumbo nucifera HOM05D004660 ORTHO05D005474 9.3e-51 203.8 134 70.9
arahy.Tifrunner.gnm1.ann1.0Y4BRG Arachis hypogaea HOM05D004660 ORTHO05D005474 4.6e-50 201.4 134 70.9
CSS0045456 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 1.8e-49 199.5 114 74.6
Os10g0509100 Oryza sativa ssp. japonica HOM05D004660 ORTHO05D005474 7.4e-48 194.1 146 65.1
Zm00001eb043850 Zea mays HOM05D004660 ORTHO05D005474 2.1e-47 192.6 146 64.4
Lsat_1_v5_gn_6_117240 Lactuca sativa HOM05D004660 ORTHO05D005474 1.4e-46 189.9 150 62.0
MD07G1303200 Malus domestica HOM05D004660 ORTHO05D005474 2.0e-45 186.0 101 86.1
Medtr3g093320 Medicago truncatula HOM05D004660 ORTHO05D005474 3.7e-39 165.2 146 61.0
Cc02_g00620 Coffea canephora HOM05D004660 ORTHO05D005474 4.1e-38 161.8 146 54.8
BcaC01g02416 Brassica carinata HOM05D004660 ORTHO05D005474 6.9e-38 161.0 101 69.3
CSS0032658 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 1.3e-36 156.8 146 55.5
SalBow2G1279 Salvia bowleyana HOM05D004660 ORTHO05D005474 1.2e-34 150.2 97 72.2
SEGI_20417 Sequoiadendron giganteum HOM05D004660 ORTHO05D005474 3.6e-34 148.7 147 51.0
Mapoly0204s0014 Marchantia polymorpha HOM05D004660 ORTHO05D005474 4.8e-31 138.3 117 56.4
SMO351G0342 Selaginella moellendorffii HOM05D004660 ORTHO05D005474 1.4e-25 120.2 166 41.0
Aa31LG4G18040 Aethionema arabicum HOM05D004660 ORTHO05D005474 2.6e-24 115.9 134 47.8
Actinidia08719 Actinidia chinensis HOM05D004660 ORTHO05D005474 1.4e-19 100.1 67 67.2
DCAR_001793 Daucus carota HOM05D000001 ORTHO05D000003 2.5e-19 99.4 75 62.7
AagrBONN_evm.TU.Sc2ySwM_117.1216 Anthoceros agrestis HOM05D004660 ORTHO05D005474 1.6e-18 96.7 102 48.0
Cre07.g345800 Chlamydomonas reinhardtii HOM05D004660 ORTHO05D005474 7.2e-11 71.2 93 39.8
arahy.Tifrunner.gnm1.ann1.RHW5C7 Arachis hypogaea HOM05D017329 ORTHO05D005474 1.2e-08 63.9 37 73.0


User provided reference genes

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