Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G4060 Fragaria x ananassa HOM05D001997 ORTHO05D004620 4.9e-120 434.5 221 100.0
FAN01G2316 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.5e-89 333.2 321 62.6
FAN03G0465 Fragaria x ananassa HOM05D001997 ORTHO05D004620 3.8e-88 328.6 346 58.7
FvH4_7g26521 Fragaria vesca HOM05D001997 ORTHO05D004620 3.2e-87 325.5 356 57.3
FAN06G2538 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.6e-86 323.2 335 60.0
FAN10G3679 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.0e-69 267.3 354 51.1
RcHm_v2.0_Chr1g0373181 Rosa chinensis HOM05D001997 ORTHO05D004620 4.4e-60 235.3 358 45.3
GSVIVG01013581001 Vitis vinifera HOM05D001997 ORTHO05D004620 5.1e-16 89.0 239 31.4
CiPaw.02G056300 Carya illinoinensis HOM05D001997 ORTHO05D004620 2.5e-15 86.7 272 29.4
Prupe.2G167200 Prunus persica HOM05D001997 ORTHO05D004620 4.0e-13 79.3 247 28.7
MD01G1056400 Malus domestica HOM05D001997 ORTHO05D004620 2.6e-12 76.6 223 30.0
Dinv22695 Davidia involucrata HOM05D001997 ORTHO05D004620 1.7e-11 73.9 274 26.3
FAN03G0113 Fragaria x ananassa HOM05D001997 ORTHO05D004620 6.4e-11 72.0 292 26.7
Hma1.2p1_0597F.1_g186510 Hydrangea macrophylla HOM05D001997 ORTHO05D004620 1.4e-10 70.9 63 57.1
Actinidia35961 Actinidia chinensis HOM05D001997 ORTHO05D004620 1.9e-10 70.5 275 25.8
FvH4_7g14000 Fragaria vesca HOM05D001997 ORTHO05D004620 1.9e-10 70.5 279 26.2
RcHm_v2.0_Chr1g0354651 Rosa chinensis HOM05D001997 ORTHO05D004620 2.4e-10 70.1 279 27.2
FAN10G2611 Fragaria x ananassa HOM05D001997 ORTHO05D004620 4.1e-10 69.3 279 25.8
FAN10G3464 Fragaria x ananassa HOM05D001997 ORTHO05D004620 4.1e-10 69.3 279 25.8
FAN10G4317 Fragaria x ananassa HOM05D001997 ORTHO05D004620 4.1e-10 69.3 279 25.8
CSS0007184 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D004620 7.1e-10 68.6 63 55.6
Carub.0004s2573 Capsella rubella HOM05D001997 ORTHO05D004620 7.1e-10 68.6 221 28.5
FAN01G1889 Fragaria x ananassa HOM05D001997 ORTHO05D004620 7.1e-10 68.6 279 25.8
Glyma.12G021000 Glycine max HOM05D001997 ORTHO05D004620 9.2e-10 68.2 364 25.8
PGSC0003DMG400026903 Solanum tuberosum HOM05D001997 ORTHO05D004620 9.2e-10 68.2 62 59.7
Ciclev10019328m.g Citrus clementina HOM05D001997 ORTHO05D004620 1.2e-09 67.8 63 58.7
Peaxi162Scf00375g00082 Petunia axillaris HOM05D001997 ORTHO05D004620 1.2e-09 67.8 62 58.1
FAN06G4213 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.6e-09 67.4 63 58.7
QL10p047463 Quercus lobata HOM05D001997 ORTHO05D004620 1.6e-09 67.4 63 57.1
Solyc06g073490.2 Solanum lycopersicum HOM05D001997 ORTHO05D004620 1.6e-09 67.4 62 58.1
CANSAT21G1219 Cannabis sativa HOM05D001997 ORTHO05D004620 2.1e-09 67.0 112 33.9
Cfa015772 Carpinus fangiana HOM05D001997 ORTHO05D004620 2.1e-09 67.0 63 60.3
Sopen06g029850 Solanum pennellii HOM05D001997 ORTHO05D004620 2.1e-09 67.0 62 56.5
Thecc.05G002900 Theobroma cacao HOM05D001997 ORTHO05D004620 2.1e-09 67.0 88 43.2
Nitab4.5_0002368g0100 Nicotiana tabacum HOM05D001997 ORTHO05D004620 2.7e-09 66.6 277 26.4
Oeu048804.2 Olea europaea HOM05D001997 ORTHO05D004620 2.7e-09 66.6 269 26.4
TWI36G0125 Tripterygium wilfordii HOM05D001997 ORTHO05D004620 2.7e-09 66.6 80 46.2
FAN06G3325 Fragaria x ananassa HOM05D001997 ORTHO05D004620 3.5e-09 66.2 198 29.8
TAR636G0474 Trochodendron aralioides HOM05D001997 ORTHO05D004620 4.6e-09 65.9 97 44.3
A05p03690 Brassica napus HOM05D001997 ORTHO05D004620 6.0e-09 65.5 236 25.8
Cc01_g08750 Coffea canephora HOM05D001997 ORTHO05D004620 6.0e-09 65.5 60 50.0
Dinv05995 Davidia involucrata HOM05D001997 ORTHO05D004620 6.0e-09 65.5 81 51.9
MD07G1139400 Malus domestica HOM05D001997 ORTHO05D004620 6.0e-09 65.5 63 52.4
Nitab4.5_0010690g0010 Nicotiana tabacum HOM05D001997 ORTHO05D004620 6.0e-09 65.5 84 44.0
Rhsim09G0030400 Rhododendron simsii HOM05D001997 ORTHO05D004620 6.0e-09 65.5 60 53.3
BraA05t19355Z Brassica rapa HOM05D001997 ORTHO05D004620 7.8e-09 65.1 240 25.0
SGA_v2.0_scaffold16G07570 Striga asiatica HOM05D001997 ORTHO05D004620 7.8e-09 65.1 78 44.9
Atru.chr3.1570 Acer truncatum HOM05D001997 ORTHO05D004620 1.0e-08 64.7 59 59.3
Atru.chr3.1589 Acer truncatum HOM05D001997 ORTHO05D004620 1.0e-08 64.7 59 59.3
Haze_00722 Corylus avellana HOM05D001997 ORTHO05D004620 1.0e-08 64.7 64 57.8
Gorai.004G087500 Gossypium raimondii HOM05D001997 ORTHO05D004620 1.0e-08 64.7 87 39.1
TAR622G0498 Trochodendron aralioides HOM05D001997 ORTHO05D004620 1.0e-08 64.7 59 59.3
Glyma.11G094600 Glycine max HOM05D001997 ORTHO05D004620 1.3e-08 64.3 81 51.9
Gorai.006G186500 Gossypium raimondii HOM05D001997 ORTHO05D004620 1.3e-08 64.3 82 40.2
Gohir.A08G074100 Gossypium hirsutum HOM05D001997 ORTHO05D004620 1.7e-08 63.9 87 39.1
Gohir.D08G083300 Gossypium hirsutum HOM05D001997 ORTHO05D004620 1.7e-08 63.9 87 39.1
Lj4g0020139 Lotus japonicus HOM05D001997 ORTHO05D004620 1.7e-08 63.9 47 66.0
Migut.N02417 Erythranthe guttata HOM05D001997 ORTHO05D004620 2.3e-08 63.5 61 49.2
PGR044G1365 Punica granatum HOM05D001997 ORTHO05D004620 2.3e-08 63.5 75 45.3
MBI11_g35030_MAGBIO Magnolia biondii HOM05D001997 ORTHO05D004620 3.0e-08 63.2 63 50.8
Manes.04G048600 Manihot esculenta HOM05D001997 ORTHO05D004620 3.0e-08 63.2 76 50.0
Nn5g27952 Nelumbo nucifera HOM05D001997 ORTHO05D004620 3.0e-08 63.2 123 36.6
Oeu015677.2 Olea europaea HOM05D001997 ORTHO05D004620 3.0e-08 63.2 77 41.6
MSTRG.12412 Avicennia marina HOM05D001997 ORTHO05D004620 3.9e-08 62.8 61 49.2
Cpa.g.sc81.168 Carica papaya HOM05D001997 ORTHO05D004620 5.1e-08 62.4 72 45.8
Duzib093G0427 Durio zibethinus HOM05D001997 ORTHO05D004620 5.1e-08 62.4 57 52.6
Phvul.011G023500 Phaseolus vulgaris HOM05D001997 ORTHO05D004620 5.1e-08 62.4 70 54.3
THA.LOC104802304 Tarenaya hassleriana HOM05D001997 ORTHO05D004620 5.1e-08 62.4 128 32.8
C04p04300 Brassica napus HOM05D001997 ORTHO05D004620 6.6e-08 62.0 241 25.3
Thhalv10001801m.g Eutrema salsugineum HOM05D001997 ORTHO05D004620 6.6e-08 62.0 80 40.0
Potri.007G124700 Populus trichocarpa HOM05D001997 ORTHO05D004620 6.6e-08 62.0 63 52.4
CARHR138340 Cardamine hirsuta HOM05D001997 ORTHO05D004620 8.6e-08 61.6 91 34.1
Ca_26058_v3 Cicer arietinum L. HOM05D001997 ORTHO05D004620 8.6e-08 61.6 61 49.2
Ca_30128_v3 Cicer arietinum L. HOM05D001997 ORTHO05D004620 8.6e-08 61.6 61 49.2
Sabra17G0022300 Salix brachista HOM05D001997 ORTHO05D004620 8.6e-08 61.6 63 50.8
Sabra17G0022600 Salix brachista HOM05D001997 ORTHO05D004620 8.6e-08 61.6 63 50.8
BolC4t22066H Brassica oleracea HOM05D001997 ORTHO05D004620 1.1e-07 61.2 241 25.3
VMungo1127G1251 Vigna mungo HOM05D001997 ORTHO05D004620 1.1e-07 61.2 75 42.7
MSTRG.17660 Avicennia marina HOM05D001997 ORTHO05D004620 1.5e-07 60.8 78 39.7
BolC8t50019H Brassica oleracea HOM05D001997 ORTHO05D004620 1.5e-07 60.8 207 27.5
Glyma.19G130251 Glycine max HOM05D001997 ORTHO05D004620 1.5e-07 60.8 88 43.2
HanXRQChr07g0186151 Helianthus annuus HOM05D001997 ORTHO05D004620 1.5e-07 60.8 60 48.3
Medtr4g076620 Medicago truncatula HOM05D001997 ORTHO05D004620 1.5e-07 60.8 47 63.8
Sc19g0002180 Simmondsia chinensis HOM05D001997 ORTHO05D004620 1.5e-07 60.8 63 49.2
CDE08G0116 Ceratophyllum demersum HOM05D001997 ORTHO05D004620 1.9e-07 60.5 60 50.0
Potri.017G035700 Populus trichocarpa HOM05D001997 ORTHO05D004620 1.9e-07 60.5 63 52.4
HanXRQChr02g0057961 Helianthus annuus HOM05D001997 ORTHO05D004620 2.5e-07 60.1 60 50.0
Lj3g0010188 Lotus japonicus HOM05D001997 ORTHO05D004620 2.5e-07 60.1 78 48.7
Lsat_1_v5_gn_6_55020 Lactuca sativa HOM05D001997 ORTHO05D004620 3.3e-07 59.7 77 41.6
Lj6C60T7 Lonicera japonica HOM05D001997 ORTHO05D004620 3.3e-07 59.7 79 40.5
Sp4g25380 Schrenkiella parvula HOM05D001997 ORTHO05D004620 3.3e-07 59.7 63 50.8
TPR.G13756 Trifolium pratense HOM05D001997 ORTHO05D004620 3.3e-07 59.7 70 50.0
ECA233G5997 Erigeron canadensis HOM05D001997 ORTHO05D004620 4.3e-07 59.3 57 49.1
Glyma.03G127700 Glycine max HOM05D001997 ORTHO05D004620 4.3e-07 59.3 88 42.0
TPR.G13749 Trifolium pratense HOM05D001997 ORTHO05D004620 4.3e-07 59.3 86 45.3
AUR62037461 Chenopodium quinoa HOM05D001997 ORTHO05D004620 5.6e-07 58.9 62 50.0
PSO017G4366 Papaver somniferum HOM05D001997 ORTHO05D004620 5.6e-07 58.9 52 55.8
Psat7g172720 Pisum sativum HOM05D001997 ORTHO05D004620 5.6e-07 58.9 46 65.2
AUR62035000 Chenopodium quinoa HOM05D001997 ORTHO05D004620 7.3e-07 58.5 62 50.0
Haze_01373 Corylus avellana HOM05D001997 ORTHO05D004620 7.3e-07 58.5 52 55.8
Thhalv10001772m.g Eutrema salsugineum HOM05D001997 ORTHO05D004620 7.3e-07 58.5 67 44.8
Lalb_Chr01g0001101 Lupinus albus HOM05D001997 ORTHO05D004620 7.3e-07 58.5 57 56.1
unitig_22.g6172 Utricularia gibba HOM05D001997 ORTHO05D004620 7.3e-07 58.5 82 40.2
arahy.Tifrunner.gnm1.ann1.7X5TTD Arachis hypogaea HOM05D001997 ORTHO05D004620 1.2e-06 57.8 83 39.8
BcaB06g29293 Brassica carinata HOM05D001997 ORTHO05D004620 1.2e-06 57.8 262 24.4
Aqoxy7G03960 Aquilegia oxysepala HOM05D001997 ORTHO05D004620 1.6e-06 57.4 125 32.8
Gohir.D09G164700 Gossypium hirsutum HOM05D001997 ORTHO05D004620 1.6e-06 57.4 61 50.8
Eucgr.A00056 Eucalyptus grandis HOM05D001997 ORTHO05D004620 2.1e-06 57.0 47 63.8
PSO675G0019 Papaver somniferum HOM05D001997 ORTHO05D004620 2.1e-06 57.0 51 56.9
BcaC02g07197 Brassica carinata HOM05D001997 ORTHO05D004620 2.8e-06 56.6 79 38.0
C04p70220 Brassica napus HOM05D001997 ORTHO05D004620 2.8e-06 56.6 79 38.0
BolC4t28526H Brassica oleracea HOM05D001997 ORTHO05D004620 2.8e-06 56.6 79 38.0
BcaC07g39373 Brassica carinata HOM05D001997 ORTHO05D004620 3.6e-06 56.2 226 24.8
A04p32530 Brassica napus HOM05D001997 ORTHO05D004620 3.6e-06 56.2 79 38.0
Gohir.A09G169000 Gossypium hirsutum HOM05D001997 ORTHO05D004620 3.6e-06 56.2 61 50.8
AT2G43250 Arabidopsis thaliana HOM05D001997 ORTHO05D004620 4.7e-06 55.8 63 47.6
A06p18770 Brassica napus HOM05D001997 ORTHO05D004620 4.7e-06 55.8 68 44.1
Medtr4g076640 Medicago truncatula HOM05D001997 ORTHO05D004620 4.7e-06 55.8 61 45.9
Ah.05g167000 Amaranthus hybridus HOM05D001997 ORTHO05D004620 6.2e-06 55.5 62 46.8
C08p23950 Brassica napus HOM05D001997 ORTHO05D004620 6.2e-06 55.5 108 34.3
AL4G41910 Arabidopsis lyrata HOM05D001997 ORTHO05D004620 8.1e-06 55.1 63 49.2
BraA04t18717Z Brassica rapa HOM05D001997 ORTHO05D004620 8.1e-06 55.1 79 38.0


User provided reference genes

Program Settings