Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G3994 Fragaria x ananassa HOM05D004645 ORTHO05D005693 2.5e-158 562.4 355 100.0
FvH4_7g34300 Fragaria vesca HOM05D004645 ORTHO05D005693 1.8e-148 529.6 372 93.5
RcHm_v2.0_Chr1g0384691 Rosa chinensis HOM05D004645 ORTHO05D005693 1.9e-145 519.6 314 93.3
FAN03G2055 Fragaria x ananassa HOM05D004645 ORTHO05D005693 2.6e-139 499.2 339 85.3
MD01G1239600 Malus domestica HOM05D004645 ORTHO05D005693 2.2e-130 469.5 321 82.2
Prupe.2G329500 Prunus persica HOM05D004645 ORTHO05D005693 3.8e-130 468.8 326 83.4
CiPaw.05G212200 Carya illinoinensis HOM05D004645 ORTHO05D005693 9.3e-121 437.6 322 77.0
CiPaw.06G036400 Carya illinoinensis HOM05D004645 ORTHO05D005693 1.6e-117 426.8 321 77.6
CANSAT21G0324 Cannabis sativa HOM05D004645 ORTHO05D005693 2.1e-117 426.4 318 77.4
GSVIVG01024286001 Vitis vinifera HOM05D004645 ORTHO05D005693 2.2e-114 416.4 252 84.9
VMungo1127G1262 Vigna mungo HOM05D004645 ORTHO05D005693 4.2e-113 412.1 324 75.0
Glyma.12G014000 Glycine max HOM05D004645 ORTHO05D005693 7.1e-113 411.4 319 75.5
Thecc.05G223300 Theobroma cacao HOM05D004645 ORTHO05D005693 7.9e-112 407.9 327 74.0
Glyma.09G223000 Glycine max HOM05D004645 ORTHO05D005693 1.0e-111 407.5 323 74.6
Phvul.011G016900 Phaseolus vulgaris HOM05D004645 ORTHO05D005693 1.8e-111 406.8 325 73.2
Gohir.D03G055700 Gossypium hirsutum HOM05D004645 ORTHO05D005693 1.1e-110 404.1 332 72.6
Manes.09G130100 Manihot esculenta HOM05D004645 ORTHO05D005693 1.1e-110 404.1 324 74.1
Gorai.003G058500 Gossypium raimondii HOM05D004645 ORTHO05D005693 2.5e-110 402.9 335 71.9
Atru.chr12.1851 Acer truncatum HOM05D004645 ORTHO05D005693 3.3e-110 402.5 321 75.4
Duzib177G0889 Durio zibethinus HOM05D004645 ORTHO05D005693 5.7e-110 401.7 346 69.9
Lj1g0014871 Lotus japonicus HOM05D004645 ORTHO05D005693 7.4e-110 401.4 317 73.5
Gohir.A02G114700 Gossypium hirsutum HOM05D004645 ORTHO05D005693 6.3e-109 398.3 331 71.3
arahy.Tifrunner.gnm1.ann1.3IB4NC Arachis hypogaea HOM05D004645 ORTHO05D005693 2.4e-108 396.4 340 70.3
arahy.Tifrunner.gnm1.ann1.7F5N7U Arachis hypogaea HOM05D004645 ORTHO05D005693 2.4e-108 396.4 340 70.3
Medtr0004s0240 Medicago truncatula HOM05D004645 ORTHO05D005693 1.2e-107 394.0 316 75.3
Dinv01810 Davidia involucrata HOM05D004645 ORTHO05D005693 5.9e-107 391.7 335 72.5
Potri.013G076800 Populus trichocarpa HOM05D004645 ORTHO05D005693 5.9e-107 391.7 316 70.6
Actinidia33801 Actinidia chinensis HOM05D004645 ORTHO05D005693 6.5e-106 388.3 332 72.0
Gohir.A13G158000 Gossypium hirsutum HOM05D004645 ORTHO05D005693 1.4e-105 387.1 325 72.9
Potri.019G042800 Populus trichocarpa HOM05D004645 ORTHO05D005693 3.2e-105 386.0 252 78.6
Ciclev10031859m.g Citrus clementina HOM05D004645 ORTHO05D005693 1.6e-104 383.6 328 71.6
Hma1.2p1_0419F.1_g149550 Hydrangea macrophylla HOM05D004645 ORTHO05D005693 1.6e-104 383.6 246 80.9
TAR629G2315 Trochodendron aralioides HOM05D004645 ORTHO05D005693 4.6e-104 382.1 325 72.0
Manes.08G160200 Manihot esculenta HOM05D004645 ORTHO05D005693 6.1e-104 381.7 316 69.6
CSS0046309 Camellia sinensis var. sinensis HOM05D004645 ORTHO05D005693 1.0e-103 380.9 327 72.2
Lalb_Chr03g0037841 Lupinus albus HOM05D004645 ORTHO05D005693 1.4e-103 380.6 307 70.7
Duzib128G1942 Durio zibethinus HOM05D004645 ORTHO05D005693 5.1e-103 378.6 332 69.6
TWI60G0474 Tripterygium wilfordii HOM05D004645 ORTHO05D005693 1.1e-102 377.5 331 69.8
Lj5g0009502 Lotus japonicus HOM05D004645 ORTHO05D005693 5.7e-102 375.2 306 72.5
Hund09812 Selenicereus undatus HOM05D004645 ORTHO05D005693 5.7e-102 375.2 266 75.2
CSS0029852 Camellia sinensis var. sinensis HOM05D004645 ORTHO05D005693 9.7e-102 374.4 335 70.1
PSO782G2658 Papaver somniferum HOM05D004645 ORTHO05D005693 8.2e-101 371.3 321 70.1
PSO063G6220 Papaver somniferum HOM05D004645 ORTHO05D005693 2.4e-100 369.8 323 69.7
THA.LOC104820831 Tarenaya hassleriana HOM05D004645 ORTHO05D005693 1.2e-99 367.5 329 63.2
Gohir.D13G162500 Gossypium hirsutum HOM05D004645 ORTHO05D005693 1.5e-99 367.1 325 70.8
PGR119G0624 Punica granatum HOM05D004645 ORTHO05D005693 4.5e-99 365.5 323 70.0
TAR633G2534 Trochodendron aralioides HOM05D004645 ORTHO05D005693 3.8e-98 362.5 242 77.7
A10p21880 Brassica napus HOM05D004645 ORTHO05D005693 6.5e-98 361.7 327 64.2
BraA10t44247Z Brassica rapa HOM05D004645 ORTHO05D005693 6.5e-98 361.7 327 64.2
BolC9t58802H Brassica oleracea HOM05D004645 ORTHO05D005693 8.5e-98 361.3 325 65.2
THA.LOC104802906 Tarenaya hassleriana HOM05D004645 ORTHO05D005693 8.5e-98 361.3 324 61.7
BcaC04g18782 Brassica carinata HOM05D004645 ORTHO05D005693 1.1e-97 360.9 326 65.0
BcaB08g36765 Brassica carinata HOM05D004645 ORTHO05D005693 1.4e-97 360.5 326 64.1
C09p59630 Brassica napus HOM05D004645 ORTHO05D005693 4.2e-97 359.0 325 64.9
Cc02_g00050 Coffea canephora HOM05D004645 ORTHO05D005693 4.2e-97 359.0 328 64.9
Nitab4.5_0009278g0030 Nicotiana tabacum HOM05D004645 ORTHO05D005693 5.5e-97 358.6 329 62.9
Sp6g26710 Schrenkiella parvula HOM05D004645 ORTHO05D005693 5.5e-97 358.6 330 66.4
Carub.0006s1574 Capsella rubella HOM05D004645 ORTHO05D005693 3.9e-95 352.4 328 62.5
Sabra19G0053400 Salix brachista HOM05D004645 ORTHO05D005693 3.9e-95 352.4 284 66.2
AT5G17510 Arabidopsis thaliana HOM05D004645 ORTHO05D005693 5.1e-95 352.1 333 62.2
TWI32G1082 Tripterygium wilfordii HOM05D004645 ORTHO05D005693 8.8e-95 351.3 337 65.6
AL6G28600 Arabidopsis lyrata HOM05D004645 ORTHO05D005693 1.5e-94 350.5 324 64.5
Peaxi162Scf00516g00425 Petunia axillaris HOM05D004645 ORTHO05D005693 1.5e-94 350.5 326 67.5
Solyc03g097300.4 Solanum lycopersicum HOM05D004645 ORTHO05D005693 4.4e-94 349.0 327 65.4
Sopen03g028070 Solanum pennellii HOM05D004645 ORTHO05D005693 4.4e-94 349.0 327 65.4
Sed0013778 Sechium edule HOM05D004645 ORTHO05D005693 5.7e-94 348.6 322 68.6
CAN.G732.33 Capsicum annuum HOM05D004645 ORTHO05D005693 7.4e-94 348.2 328 62.8
MELO3C014340.2 Cucumis melo HOM05D004645 ORTHO05D005693 7.4e-94 348.2 327 67.6
Lalb_Chr19g0140101 Lupinus albus HOM05D004645 ORTHO05D005693 7.4e-94 348.2 312 63.1
Aa31LG11G12160 Aethionema arabicum HOM05D004645 ORTHO05D005693 2.8e-93 346.3 324 62.3
PGSC0003DMG400026490 Solanum tuberosum HOM05D004645 ORTHO05D005693 2.8e-93 346.3 330 63.6
Oeu028988.1 Olea europaea HOM05D004645 ORTHO05D005693 4.8e-93 345.5 314 63.4
ClCG09G013170 Citrullus lanatus HOM05D004645 ORTHO05D005693 1.8e-92 343.6 329 67.2
Migut.L00703 Erythranthe guttata HOM05D004645 ORTHO05D005693 3.1e-92 342.8 338 59.8
HanXRQChr11g0333681 Helianthus annuus HOM05D004645 ORTHO05D005693 3.1e-92 342.8 320 62.5
Aqoxy5G00549 Aquilegia oxysepala HOM05D004645 ORTHO05D005693 9.1e-92 341.3 332 63.6
MSTRG.26920 Avicennia marina HOM05D004645 ORTHO05D005693 1.2e-91 340.9 317 61.8
Gorai.013G184600 Gossypium raimondii HOM05D004645 ORTHO05D005693 2.0e-91 340.1 327 67.0
HanXRQChr14g0434641 Helianthus annuus HOM05D004645 ORTHO05D005693 2.0e-91 340.1 315 62.5
Nitab4.5_0000021g0850 Nicotiana tabacum HOM05D004645 ORTHO05D005693 3.5e-91 339.3 256 69.9
TPR.G9835 Trifolium pratense HOM05D004645 ORTHO05D005693 2.2e-90 336.7 317 68.1
Lj3C883G6 Lonicera japonica HOM05D000507 ORTHO05D000416 2.9e-90 336.3 256 72.7
Lsat_1_v5_gn_8_3080 Lactuca sativa HOM05D004645 ORTHO05D005693 2.5e-89 333.2 312 65.1
ECA238G1292 Erigeron canadensis HOM05D004645 ORTHO05D005693 7.2e-89 331.6 256 70.3
Oeu027899.1 Olea europaea HOM05D004645 ORTHO05D005693 1.2e-88 330.9 312 63.8
CARHR195680 Cardamine hirsuta HOM05D004645 ORTHO05D005693 1.6e-88 330.5 327 63.3
Thhalv10013879m.g Eutrema salsugineum HOM05D004645 ORTHO05D005693 1.6e-88 330.5 324 61.4
CsaV3_6G036830 Cucumis sativus L. HOM05D004645 ORTHO05D005693 6.1e-88 328.6 253 70.0
Haze_00365 Corylus avellana HOM05D004645 ORTHO05D005693 1.1e-86 324.3 215 80.9
QL09p020526 Quercus lobata HOM05D004645 ORTHO05D005693 3.7e-85 319.3 214 80.8
COL.COLO4_15124 Corchorus olitorius HOM05D004645 ORTHO05D005693 1.1e-84 317.8 216 76.4
AUR62028214 Chenopodium quinoa HOM05D004645 ORTHO05D005693 3.5e-83 312.8 255 65.9
CDE04G1041 Ceratophyllum demersum HOM05D004645 ORTHO05D005693 2.9e-82 309.7 317 58.0
EL10Ac3g05041 Beta vulgaris HOM05D004645 ORTHO05D005693 1.2e-78 297.7 398 49.2
Thhalv10020936m.g Eutrema salsugineum HOM05D004645 ORTHO05D005693 1.2e-78 297.7 351 54.1
HanXRQChr05g0156891 Helianthus annuus HOM05D004645 ORTHO05D005693 2.2e-77 293.5 236 66.9
SHI15009 Sapria himalayana HOM05D004645 ORTHO05D005693 6.3e-77 292.0 318 56.9
ECA233G1188 Erigeron canadensis HOM05D004645 ORTHO05D005693 2.4e-76 290.0 234 65.4
Ca_19601_v3 Cicer arietinum L. HOM05D004645 ORTHO05D005693 9.1e-76 288.1 218 73.4
AUR62002096 Chenopodium quinoa HOM05D004645 ORTHO05D005693 1.6e-75 287.3 240 64.2
DCAR_010525 Daucus carota HOM05D004645 ORTHO05D005693 2.7e-75 286.6 227 69.6
unitig_92.g28227 Utricularia gibba HOM05D004645 ORTHO05D005693 7.7e-75 285.0 236 63.6
Os12g0465700 Oryza sativa ssp. japonica HOM05D004645 ORTHO05D005693 1.7e-74 283.9 319 54.9
DCAR_014580 Daucus carota HOM05D004645 ORTHO05D005693 2.5e-73 280.0 322 52.8
AL3G13140 Arabidopsis lyrata HOM05D004645 ORTHO05D005693 3.2e-73 279.6 314 56.4
Ah.04g156130 Amaranthus hybridus HOM05D004645 ORTHO05D005693 5.5e-73 278.9 332 57.2
Aa31LG5G13980 Aethionema arabicum HOM05D000507 ORTHO05D000416 6.1e-72 275.4 259 58.7
SGA_v2.0_scaffold18G08211 Striga asiatica HOM05D004645 ORTHO05D005693 8.0e-72 275.0 338 55.9
Cfa016080 Carpinus fangiana HOM05D004645 ORTHO05D005693 1.4e-71 274.2 189 78.8
vmacro06368 Vaccinium macrocarpon HOM05D004645 ORTHO05D005693 4.4e-70 269.2 228 68.0
HPP92_006448 Vanilla planifolia HOM05D004645 ORTHO05D005693 4.4e-70 269.2 321 58.9
Lj3g0007707 Lotus japonicus HOM05D004645 ORTHO05D005693 1.4e-68 264.2 197 72.6
Sp3g02460 Schrenkiella parvula HOM05D004645 ORTHO05D005693 1.8e-68 263.8 333 53.2
Carub.0003s0260 Capsella rubella HOM05D004645 ORTHO05D005693 2.4e-68 263.5 336 50.9
ATR0582G008 Amborella trichopoda HOM05D004645 ORTHO05D005693 4.5e-67 259.2 309 53.1
AT3G03460 Arabidopsis thaliana HOM05D004645 ORTHO05D005693 1.7e-66 257.3 326 53.1
Sc08g0005180 Simmondsia chinensis HOM05D004645 ORTHO05D005693 2.9e-66 256.5 215 71.6
Rhsim03G0224700 Rhododendron simsii HOM05D004645 ORTHO05D005693 3.4e-62 243.0 334 55.7
BNapus_Darmor_BZH_scaffold_162p00170 Brassica napus HOM05D004645 ORTHO05D005693 2.8e-61 240.0 307 53.4
BolC1t05829H Brassica oleracea HOM05D004645 ORTHO05D005693 2.8e-61 240.0 307 53.4
A06p26400 Brassica napus HOM05D004645 ORTHO05D005693 5.4e-60 235.7 254 55.9
BNapus_Darmor_BZH_scaffold_78p00150 Brassica napus HOM05D004645 ORTHO05D005693 5.4e-60 235.7 254 55.9
BraA01t04578Z Brassica rapa HOM05D004645 ORTHO05D005693 1.2e-59 234.6 254 55.9
BcaC09g47748 Brassica carinata HOM05D004645 ORTHO05D005693 6.8e-55 218.8 253 54.2
HPP92_027983 Vanilla planifolia HOM05D004645 ORTHO05D005693 2.2e-53 213.8 207 67.6
SEGI_39287 Sequoiadendron giganteum HOM05D004645 ORTHO05D005693 4.6e-51 206.1 262 45.8
FAN01G0394 Fragaria x ananassa HOM05D004645 ORTHO05D005693 7.3e-49 198.7 102 100.0
Psat7g154680 Pisum sativum HOM05D004645 ORTHO05D005693 7.1e-44 182.2 141 68.1
TAR636G0353 Trochodendron aralioides HOM05D004645 ORTHO05D005693 1.8e-39 167.5 132 72.0
CARHR077490 Cardamine hirsuta HOM05D004645 ORTHO05D005693 5.8e-38 162.5 218 49.1
FAN01G2860 Fragaria x ananassa HOM05D004645 ORTHO05D005693 2.4e-31 140.6 112 83.9
HPP92_028759 Vanilla planifolia HOM05D004645 ORTHO05D005693 5.4e-28 129.4 222 41.9
AagrBONN_evm.TU.Sc2ySwM_228.1766 Anthoceros agrestis HOM05D004645 ORTHO05D005693 5.1e-26 122.9 149 45.6
Mapoly0012s0180 Marchantia polymorpha HOM05D004645 ORTHO05D005693 5.1e-26 122.9 152 42.8
Pp3c11_2710 Physcomitrium patens HOM05D004645 ORTHO05D005693 4.3e-25 119.8 136 43.4
Psat0s904g0040 Pisum sativum HOM05D004645 ORTHO05D005693 4.4e-22 109.8 99 59.6
CBR_g4003 Chara braunii HOM05D004645 ORTHO05D005693 1.7e-21 107.8 150 40.0
Os04g0393100 Oryza sativa ssp. japonica HOM05D004645 ORTHO05D005693 3.8e-21 106.7 121 45.5
Haze_00364 Corylus avellana HOM05D004645 ORTHO05D005693 5.4e-20 102.8 116 66.4
Os04g0393200 Oryza sativa ssp. japonica HOM05D004645 ORTHO05D005693 3.5e-19 100.1 120 44.2
Zm00001eb421230 Zea mays HOM05D004645 ORTHO05D005693 3.5e-19 100.1 130 39.2
Actinidia04560 Actinidia chinensis HOM05D004645 ORTHO05D005693 2.3e-18 97.4 114 61.4
QL09p020516 Quercus lobata HOM05D004645 ORTHO05D005693 8.7e-18 95.5 143 55.2
Cpa.g.c34419 Carica papaya HOM05D004645 ORTHO05D005693 2.5e-17 94.0 133 53.4
Dinv17242 Davidia involucrata HOM05D004645 ORTHO05D005693 3.3e-17 93.6 113 64.6
Sabra13G0065800 Salix brachista HOM05D004645 ORTHO05D005693 2.4e-15 87.4 108 49.1
AL3G45560 Arabidopsis lyrata HOM05D004645 ORTHO05D005693 1.9e-12 77.8 53 64.2
ECA075G0001 Erigeron canadensis HOM05D004645 ORTHO05D005693 7.4e-09 65.9 41 75.6
HPP92_027982 Vanilla planifolia HOM05D004645 ORTHO05D005693 2.4e-07 60.8 96 43.8
Oeu057736.1 Olea europaea HOM05D004645 ORTHO05D005693 4.0e-07 60.1 112 40.2


User provided reference genes

Program Settings