Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G3172 Fragaria x ananassa HOM05D006948 ORTHO05D008703 4.2e-53 211.1 106 100.0
FAN10G3965 Fragaria x ananassa HOM05D006948 ORTHO05D008703 4.2e-53 211.1 106 100.0
FAN01G0218 Fragaria x ananassa HOM05D006948 ORTHO05D008703 2.1e-52 208.8 106 98.1
FAN03G2439 Fragaria x ananassa HOM05D006948 ORTHO05D008703 2.1e-52 208.8 106 98.1
FvH4_7g09680 Fragaria vesca HOM05D006948 ORTHO05D008703 6.1e-52 207.2 106 97.2
FAN06G1163 Fragaria x ananassa HOM05D006948 ORTHO05D008703 6.1e-52 207.2 106 97.2
FAN06G4415 Fragaria x ananassa HOM05D006948 ORTHO05D008703 6.1e-52 207.2 106 97.2
RcHm_v2.0_Chr1g0346581 Rosa chinensis HOM05D006948 ORTHO05D008703 4.0e-43 177.9 110 84.5
Prupe.2G124300 Prunus persica HOM05D006948 ORTHO05D008703 4.9e-25 117.9 106 62.3
COL.COLO4_12436 Corchorus olitorius HOM05D006948 ORTHO05D008703 6.0e-23 110.9 106 57.5
CANSAT21G1424 Cannabis sativa HOM05D006948 ORTHO05D008703 7.8e-23 110.5 86 64.0
Duzib138G1111 Durio zibethinus HOM05D006948 ORTHO05D008703 8.6e-22 107.1 106 57.5
MD00G1058900 Malus domestica HOM05D006948 ORTHO05D008703 8.6e-22 107.1 107 57.0
TWI59G0066 Tripterygium wilfordii HOM05D006948 ORTHO05D008703 8.6e-22 107.1 86 60.5
Thecc.01G389700 Theobroma cacao HOM05D006948 ORTHO05D008703 1.5e-21 106.3 106 57.5
Manes.05G052600 Manihot esculenta HOM05D006948 ORTHO05D008703 4.7e-20 101.3 82 61.0
CiPaw.13G028600 Carya illinoinensis HOM05D006948 ORTHO05D008703 8.9e-19 97.1 102 53.9
Thecc.01G390200 Theobroma cacao HOM05D006948 ORTHO05D008703 1.2e-18 96.7 106 53.8
Gorai.004G039500 Gossypium raimondii HOM05D006948 ORTHO05D008703 1.5e-18 96.3 102 52.9
Gohir.A08G029800 Gossypium hirsutum HOM05D006948 ORTHO05D008703 4.4e-18 94.7 102 52.9
MSTRG.28159 Avicennia marina HOM05D006948 ORTHO05D008703 7.5e-18 94.0 87 55.2
Gohir.D08G040600 Gossypium hirsutum HOM05D006948 ORTHO05D008703 7.5e-18 94.0 102 52.0
Cc00_g20460 Coffea canephora HOM05D006948 ORTHO05D008703 9.8e-18 93.6 87 51.7
CsaV3_3G007550 Cucumis sativus L. HOM05D006948 ORTHO05D008703 1.7e-17 92.8 87 50.6
Cfa012992 Carpinus fangiana HOM05D006948 ORTHO05D008703 2.9e-17 92.0 103 50.5
Nitab4.5_0001818g0020 Nicotiana tabacum HOM05D006948 ORTHO05D008703 1.1e-16 90.1 105 48.6
Peaxi162Scf00392g00125 Petunia axillaris HOM05D006948 ORTHO05D008703 1.1e-16 90.1 82 54.9
Hund17076 Selenicereus undatus HOM05D006948 ORTHO05D008703 1.9e-16 89.4 79 57.0
EL10Ac1g00789 Beta vulgaris HOM05D006948 ORTHO05D008703 4.1e-16 88.2 86 54.7
Solyc01g090500.4 Solanum lycopersicum HOM05D006948 ORTHO05D008703 4.1e-16 88.2 82 53.7
Cpa.g.sc5.223 Carica papaya HOM05D006948 ORTHO05D008703 5.4e-16 87.8 85 50.6
Potri.014G054300 Populus trichocarpa HOM05D006948 ORTHO05D008703 5.4e-16 87.8 80 57.5
PGR042G1623 Punica granatum HOM05D006948 ORTHO05D008703 5.4e-16 87.8 83 50.6
Actinidia12660 Actinidia chinensis HOM05D006948 ORTHO05D008703 3.5e-15 85.1 81 58.0
Sopen01g036290 Solanum pennellii HOM05D006948 ORTHO05D008703 3.5e-15 85.1 82 52.4
AL5G42750 Arabidopsis lyrata HOM05D006948 ORTHO05D008703 4.6e-15 84.7 105 44.8
CARHR170860 Cardamine hirsuta HOM05D006948 ORTHO05D008703 4.6e-15 84.7 98 48.0
AT3G60480 Arabidopsis thaliana HOM05D006948 ORTHO05D008703 6.0e-15 84.3 103 47.6
Atru.chr4.2323 Acer truncatum HOM05D006948 ORTHO05D008703 7.8e-15 84.0 82 57.3
SGA_v2.0_scaffold43G16525 Striga asiatica HOM05D006948 ORTHO05D008703 1.0e-14 83.6 105 43.8
AUR62023432 Chenopodium quinoa HOM05D006948 ORTHO05D008703 2.3e-14 82.4 83 51.8
Sabra14G0040200 Salix brachista HOM05D006948 ORTHO05D008703 3.0e-14 82.0 80 53.8
Carub.0005s2721 Capsella rubella HOM05D006948 ORTHO05D008703 3.9e-14 81.6 85 51.8
Aa31LG10G14620 Aethionema arabicum HOM05D006948 ORTHO05D008703 6.6e-14 80.9 100 45.0
Ciclev10023020m.g Citrus clementina HOM05D006948 ORTHO05D008703 8.6e-14 80.5 81 50.6
Migut.N01755 Erythranthe guttata HOM05D006948 ORTHO05D008703 1.1e-13 80.1 85 48.2
BcaC07g40569 Brassica carinata HOM05D006948 ORTHO05D008703 1.5e-13 79.7 101 42.6
Sp5g02740 Schrenkiella parvula HOM05D006948 ORTHO05D008703 1.5e-13 79.7 100 43.0
Lsat_1_v5_gn_7_10441 Lactuca sativa HOM05D006948 ORTHO05D008703 1.9e-13 79.3 74 55.4
Migut.O00539 Erythranthe guttata HOM05D006948 ORTHO05D008703 2.5e-13 79.0 85 48.2
ECA236G1236 Erigeron canadensis HOM05D006948 ORTHO05D008703 3.3e-13 78.6 74 54.1
C08p35470 Brassica napus HOM05D006948 ORTHO05D008703 5.6e-13 77.8 96 43.8
HanXRQChr06g0168761 Helianthus annuus HOM05D006948 ORTHO05D008703 5.6e-13 77.8 74 54.1
BcaC07g40567 Brassica carinata HOM05D006948 ORTHO05D008703 9.5e-13 77.0 85 47.1
Aqoxy7G00836 Aquilegia oxysepala HOM05D006948 ORTHO05D008703 1.2e-12 76.6 100 47.0
CSS0003978 Camellia sinensis var. sinensis HOM05D006948 ORTHO05D008703 1.2e-12 76.6 79 53.2
Rhsim01G0137500 Rhododendron simsii HOM05D006948 ORTHO05D008703 1.2e-12 76.6 78 53.8
arahy.Tifrunner.gnm1.ann1.96FU63 Arachis hypogaea HOM05D006948 ORTHO05D008703 1.6e-12 76.3 85 44.7
arahy.Tifrunner.gnm1.ann1.9NP6XU Arachis hypogaea HOM05D006948 ORTHO05D008703 1.6e-12 76.3 85 44.7
MD07G1101200 Malus domestica HOM05D006948 ORTHO05D008703 2.1e-12 75.9 77 58.4
Sed0014312 Sechium edule HOM05D006948 ORTHO05D008703 2.8e-12 75.5 99 44.4
THA.LOC104817199 Tarenaya hassleriana HOM05D006948 ORTHO05D008703 3.6e-12 75.1 73 54.8
Hma1.2p1_1740F.1_g300040 Hydrangea macrophylla HOM05D006948 ORTHO05D008703 4.7e-12 74.7 76 56.6
Dinv43640 Davidia involucrata HOM05D006948 ORTHO05D008703 8.1e-12 73.9 77 57.1
Os04g0549400 Oryza sativa ssp. japonica HOM05D006948 ORTHO05D008703 8.1e-12 73.9 81 46.9
AUR62018049 Chenopodium quinoa HOM05D006948 ORTHO05D008703 1.1e-11 73.6 74 51.4
Nn1g00906 Nelumbo nucifera HOM05D006948 ORTHO05D008703 1.8e-11 72.8 76 55.3
BolC8t51138H Brassica oleracea HOM05D006948 ORTHO05D008703 3.1e-11 72.0 80 48.8
Eucgr.E01580 Eucalyptus grandis HOM05D006948 ORTHO05D008703 4.0e-11 71.6 77 53.2
Glyma.01G074400 Glycine max HOM05D006948 ORTHO05D008703 4.0e-11 71.6 81 44.4
BcaC07g42775 Brassica carinata HOM05D006948 ORTHO05D008703 5.2e-11 71.2 77 49.4
CDE02G3860 Ceratophyllum demersum HOM05D006948 ORTHO05D008703 8.9e-11 70.5 78 46.2
Ca_27396_v3 Cicer arietinum L. HOM05D006948 ORTHO05D008703 1.2e-10 70.1 101 40.6
Lalb_Chr19g0126621 Lupinus albus HOM05D006948 ORTHO05D008703 1.2e-10 70.1 85 40.0
Oeu035671.1 Olea europaea HOM05D006948 ORTHO05D008703 1.5e-10 69.7 64 57.8
CDE11G0572 Ceratophyllum demersum HOM05D006948 ORTHO05D008703 2.0e-10 69.3 77 46.8
Haze_02785 Corylus avellana HOM05D006948 ORTHO05D008703 2.0e-10 69.3 84 46.4
Medtr7g446140 Medicago truncatula HOM05D006948 ORTHO05D008703 2.0e-10 69.3 79 46.8
PSO675G6563 Papaver somniferum HOM05D006948 ORTHO05D008703 2.0e-10 69.3 74 51.4
PSO732G0264 Papaver somniferum HOM05D006948 ORTHO05D008703 2.0e-10 69.3 77 49.4
TPR.G39099 Trifolium pratense HOM05D006948 ORTHO05D008703 5.8e-10 67.8 83 43.4
Lj1g0016170 Lotus japonicus HOM05D006948 ORTHO05D008703 7.6e-10 67.4 82 46.3
QL04p032282 Quercus lobata HOM05D006948 ORTHO05D008703 9.9e-10 67.0 62 56.5
Zm00001eb429840 Zea mays HOM05D006948 ORTHO05D008703 9.9e-10 67.0 77 44.2
ClCG05G000390 Citrullus lanatus HOM05D006948 ORTHO05D008703 1.3e-09 66.6 63 52.4
Haze_02790 Corylus avellana HOM05D006948 ORTHO05D008703 1.3e-09 66.6 79 48.1
QL04p031942 Quercus lobata HOM05D006948 ORTHO05D008703 1.7e-09 66.2 82 46.3
Haze_24986 Corylus avellana HOM05D006948 ORTHO05D008703 2.2e-09 65.9 79 48.1
MELO3C005977.2 Cucumis melo HOM05D006948 ORTHO05D008703 2.2e-09 65.9 79 44.3
QL04p032169 Quercus lobata HOM05D006948 ORTHO05D008703 2.9e-09 65.5 62 53.2
QL04p033225 Quercus lobata HOM05D006948 ORTHO05D008703 2.9e-09 65.5 62 53.2
QL04p033368 Quercus lobata HOM05D006948 ORTHO05D008703 3.8e-09 65.1 62 51.6
unitig_0.g2760 Utricularia gibba HOM05D006948 ORTHO05D008703 8.4e-09 63.9 64 54.7
A09p52730 Brassica napus HOM05D006948 ORTHO05D008703 1.1e-08 63.5 111 36.0
ATR0057G003 Amborella trichopoda HOM05D006948 ORTHO05D008703 4.1e-08 61.6 77 45.5
VMungo1383G1377 Vigna mungo HOM05D006948 ORTHO05D008703 4.1e-08 61.6 81 40.7
SalBow5G2465 Salvia bowleyana HOM05D006948 ORTHO05D008703 5.4e-08 61.2 64 46.9
SalBow5G5528 Salvia bowleyana HOM05D006948 ORTHO05D008703 5.4e-08 61.2 64 46.9
PGSC0003DMG401026039 Solanum tuberosum HOM05D006948 ORTHO05D008703 7.1e-08 60.8 61 47.5
Thecc.01G390600 Theobroma cacao HOM05D006948 ORTHO05D008703 7.1e-08 60.8 49 61.2
SEGI_25204 Sequoiadendron giganteum HOM05D006948 ORTHO05D008703 3.5e-07 58.5 70 50.0
SEGI_39218 Sequoiadendron giganteum HOM05D006948 ORTHO05D008703 3.5e-07 58.5 70 50.0
AUR62013722 Chenopodium quinoa HOM05D006948 ORTHO05D008703 4.6e-07 58.2 66 45.5
Nitab4.5_0002874g0090 Nicotiana tabacum HOM05D006948 ORTHO05D008703 4.6e-07 58.2 86 39.5
SHI13603 Sapria himalayana HOM05D006948 ORTHO05D008703 7.8e-07 57.4 70 45.7
HPP92_014505 Vanilla planifolia HOM05D006948 ORTHO05D008703 1.0e-06 57.0 63 41.3
TAR629G0288 Trochodendron aralioides HOM05D006948 ORTHO05D000005 2.3e-06 55.8 54 57.4
Phvul.008G140300 Phaseolus vulgaris HOM05D006948 ORTHO05D008703 6.6e-06 54.3 101 31.7


User provided reference genes

Program Settings