Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G3940 Fragaria x ananassa HOM05D005010 ORTHO05D006065 1.3e-114 416.4 203 100.0
FvH4_7g08470 Fragaria vesca HOM05D005010 ORTHO05D006065 5.3e-36 155.2 80 91.2
FAN01G2345 Fragaria x ananassa HOM05D005010 ORTHO05D006065 5.3e-36 155.2 80 91.2
FAN03G3376 Fragaria x ananassa HOM05D005010 ORTHO05D006065 5.3e-36 155.2 80 91.2
FAN06G0276 Fragaria x ananassa HOM05D005010 ORTHO05D006065 5.3e-36 155.2 80 91.2
FAN03G2591 Fragaria x ananassa HOM05D005010 ORTHO05D006065 1.2e-35 154.1 80 91.2
FAN03G3310 Fragaria x ananassa HOM05D005010 ORTHO05D006065 1.2e-35 154.1 80 91.2
RcHm_v2.0_Chr1g0343231 Rosa chinensis HOM05D005010 ORTHO05D006065 1.2e-35 154.1 80 90.0
FAN26G0391 Fragaria x ananassa HOM05D005010 ORTHO05D006065 2.0e-35 153.3 80 90.0
FvH4_1g22161 Fragaria vesca HOM05D005010 ORTHO05D006065 1.3e-34 150.6 80 88.8
FAN19G0035 Fragaria x ananassa HOM05D005010 ORTHO05D006065 1.3e-34 150.6 80 88.8
RcHm_v2.0_Chr2g0122991 Rosa chinensis HOM05D005010 ORTHO05D006065 2.2e-34 149.8 80 87.5
MD07G1084500 Malus domestica HOM05D005010 ORTHO05D006065 4.2e-33 145.6 80 85.0
Prupe.2G112100 Prunus persica HOM05D005010 ORTHO05D006065 5.5e-33 145.2 80 83.8
TPR.G14634 Trifolium pratense HOM05D005010 ORTHO05D006065 5.5e-33 145.2 80 82.5
Lalb_Chr17g0339751 Lupinus albus HOM05D005010 ORTHO05D006065 7.1e-33 144.8 80 82.5
Duzib138G0257 Durio zibethinus HOM05D005010 ORTHO05D006065 1.2e-32 144.1 80 83.8
FAN28G0697 Fragaria x ananassa HOM05D005010 ORTHO05D006065 1.2e-32 144.1 80 85.0
Medtr4g119220 Medicago truncatula HOM05D005010 ORTHO05D006065 1.2e-32 144.1 80 80.0
Ca_21537_v3 Cicer arietinum L. HOM05D004591 ORTHO05D005749 2.1e-32 143.3 80 81.2
Actinidia10021 Actinidia chinensis HOM05D005010 ORTHO05D006065 2.7e-32 142.9 80 85.0
CSS0001208 Camellia sinensis var. sinensis HOM05D005010 ORTHO05D006065 2.7e-32 142.9 80 82.5
CSS0029232 Camellia sinensis var. sinensis HOM05D005010 ORTHO05D006065 2.7e-32 142.9 80 82.5
QL08p049016 Quercus lobata HOM05D005010 ORTHO05D006065 2.7e-32 142.9 80 82.5
Cfa003937 Carpinus fangiana HOM05D005010 ORTHO05D006065 3.5e-32 142.5 80 81.2
Haze_15489 Corylus avellana HOM05D005010 ORTHO05D006065 3.5e-32 142.5 80 81.2
Manes.05G035400 Manihot esculenta HOM05D005010 ORTHO05D006065 3.5e-32 142.5 80 81.2
Nitab4.5_0007225g0010 Nicotiana tabacum HOM05D005010 ORTHO05D006065 1.0e-31 141.0 80 81.2
Thecc.01G360400 Theobroma cacao HOM05D005010 ORTHO05D006065 1.3e-31 140.6 80 82.5
Duzib268G0644 Durio zibethinus HOM05D005010 ORTHO05D006065 1.8e-31 140.2 80 81.2
GSVIVG01026897001 Vitis vinifera HOM05D005010 ORTHO05D006065 1.8e-31 140.2 80 80.0
PGSC0003DMG400000164 Solanum tuberosum HOM05D005010 ORTHO05D006065 3.0e-31 139.4 106 64.2
CAN.G78.54 Capsicum annuum HOM05D005010 ORTHO05D006065 3.9e-31 139.0 79 81.0
Psat4g028280 Pisum sativum HOM05D005010 ORTHO05D006065 3.9e-31 139.0 80 80.0
PGR031G1307 Punica granatum HOM05D005010 ORTHO05D006065 3.9e-31 139.0 80 77.5
VMungo0331G1782 Vigna mungo HOM05D005010 ORTHO05D006065 3.9e-31 139.0 80 80.0
CiPaw.01G060000 Carya illinoinensis HOM05D005010 ORTHO05D006065 5.1e-31 138.7 80 81.2
Ciclev10013015m.g Citrus clementina HOM05D005010 ORTHO05D006065 5.1e-31 138.7 80 80.0
Sopen01g038310 Solanum pennellii HOM05D005010 ORTHO05D006065 5.1e-31 138.7 80 80.0
TAR629G1525 Trochodendron aralioides HOM05D005010 ORTHO05D006065 5.1e-31 138.7 135 54.8
Aqoxy7G00336 Aquilegia oxysepala HOM05D005010 ORTHO05D006065 6.7e-31 138.3 80 77.5
Peaxi162Scf00020g00235 Petunia axillaris HOM05D005010 ORTHO05D006065 8.7e-31 137.9 80 80.0
Nitab4.5_0007690g0020 Nicotiana tabacum HOM05D005010 ORTHO05D006065 1.1e-30 137.5 80 78.8
Potri.002G158800 Populus trichocarpa HOM05D005010 ORTHO05D006065 1.5e-30 137.1 80 75.0
Rhsim11G0072000 Rhododendron simsii HOM05D005010 ORTHO05D006065 1.5e-30 137.1 80 81.2
Solyc01g094500.3 Solanum lycopersicum HOM05D005010 ORTHO05D006065 1.5e-30 137.1 80 78.8
Cc02_g37880 Coffea canephora HOM05D005010 ORTHO05D006065 1.9e-30 136.7 80 78.8
Dinv32470 Davidia involucrata HOM05D005010 ORTHO05D006065 1.9e-30 136.7 80 77.5
Cpa.g.c27491.2 Carica papaya HOM05D005010 ORTHO05D006065 2.5e-30 136.3 83 75.9
Ciclev10020258m.g Citrus clementina HOM05D005010 ORTHO05D006065 2.5e-30 136.3 80 77.5
Nn2g11699 Nelumbo nucifera HOM05D005010 ORTHO05D006065 2.5e-30 136.3 80 77.5
vmacro13278 Vaccinium macrocarpon HOM05D005010 ORTHO05D006065 3.3e-30 136.0 80 78.8
CsaV3_6G000480 Cucumis sativus L. HOM05D005010 ORTHO05D006065 4.3e-30 135.6 83 74.7
Glyma.03G010700 Glycine max HOM05D005010 ORTHO05D006065 4.3e-30 135.6 80 78.8
Lj9C582G27 Lonicera japonica HOM05D005010 ORTHO05D006065 4.3e-30 135.6 80 77.5
MBI18_g42176_MAGBIO Magnolia biondii HOM05D005010 ORTHO05D006065 4.3e-30 135.6 126 54.8
TWI14G0418 Tripterygium wilfordii HOM05D005010 ORTHO05D006065 4.3e-30 135.6 80 78.8
arahy.Tifrunner.gnm1.ann1.99Z3M1 Arachis hypogaea HOM05D005010 ORTHO05D006065 5.7e-30 135.2 80 76.2
arahy.Tifrunner.gnm1.ann1.L7E1K8 Arachis hypogaea HOM05D005010 ORTHO05D006065 5.7e-30 135.2 80 76.2
arahy.Tifrunner.gnm1.ann1.MH5UBF Arachis hypogaea HOM05D005010 ORTHO05D006065 5.7e-30 135.2 80 76.2
Glyma.07G071800 Glycine max HOM05D005010 ORTHO05D006065 5.7e-30 135.2 80 77.5
Gohir.A08G032600 Gossypium hirsutum HOM05D005010 ORTHO05D006065 5.7e-30 135.2 80 80.0
PSO782G1000 Papaver somniferum HOM05D005010 ORTHO05D006065 5.7e-30 135.2 103 63.1
Phvul.010G097500 Phaseolus vulgaris HOM05D005010 ORTHO05D006065 5.7e-30 135.2 80 77.5
SalBow1G2229 Salvia bowleyana HOM05D005010 ORTHO05D006065 5.7e-30 135.2 103 64.1
MELO3C021216.2 Cucumis melo HOM05D005010 ORTHO05D006065 7.4e-30 134.8 80 76.2
Atru.chr5.463 Acer truncatum HOM05D005010 ORTHO05D006065 9.6e-30 134.4 80 77.5
AUR62022551 Chenopodium quinoa HOM05D005010 ORTHO05D006065 9.6e-30 134.4 103 60.2
Gorai.004G042100 Gossypium raimondii HOM05D005010 ORTHO05D006065 9.6e-30 134.4 80 78.8
SalBow6G7245 Salvia bowleyana HOM05D005010 ORTHO05D006065 9.6e-30 134.4 103 64.1
TAR629G2224 Trochodendron aralioides HOM05D005010 ORTHO05D006065 9.6e-30 134.4 80 76.2
arahy.Tifrunner.gnm1.ann1.23H0YW Arachis hypogaea HOM05D005010 ORTHO05D006065 1.3e-29 134.0 80 75.0
COL.COLO4_12702 Corchorus olitorius HOM05D005010 ORTHO05D006065 1.3e-29 134.0 80 77.5
Aa31LG6G3020 Aethionema arabicum HOM05D005010 ORTHO05D006065 1.6e-29 133.7 80 75.0
SGA_v2.0_scaffold4G02331 Striga asiatica HOM05D005010 ORTHO05D006065 1.6e-29 133.7 84 69.0
AL7G33190 Arabidopsis lyrata HOM05D005010 ORTHO05D006065 2.1e-29 133.3 80 73.8
CANSAT21G0157 Cannabis sativa HOM05D005010 ORTHO05D006065 2.1e-29 133.3 80 73.8
Eucgr.D02284 Eucalyptus grandis HOM05D005010 ORTHO05D006065 2.1e-29 133.3 80 76.2
Rhsim07G0016300 Rhododendron simsii HOM05D005010 ORTHO05D006065 2.1e-29 133.3 80 78.8
Hund16928 Selenicereus undatus HOM05D005010 ORTHO05D006065 2.1e-29 133.3 81 72.8
unitig_749.g13796 Utricularia gibba HOM05D005010 ORTHO05D006065 2.1e-29 133.3 80 77.5
ATR0680G350 Amborella trichopoda HOM05D005010 ORTHO05D006065 2.8e-29 132.9 80 76.2
ClCG06G003790 Citrullus lanatus HOM05D005010 ORTHO05D006065 2.8e-29 132.9 80 73.8
Sabra14G0060200 Salix brachista HOM05D005010 ORTHO05D006065 2.8e-29 132.9 80 73.8
HPP92_014015 Vanilla planifolia HOM05D005010 ORTHO05D006065 2.8e-29 132.9 79 74.7
DCAR_006924 Daucus carota HOM05D005010 ORTHO05D006065 3.7e-29 132.5 80 75.0
Sc23g0002970 Simmondsia chinensis HOM05D005010 ORTHO05D006065 3.7e-29 132.5 80 77.5
ECA234G3587 Erigeron canadensis HOM05D005010 ORTHO05D006065 4.8e-29 132.1 79 75.9
Ah.05g180680 Amaranthus hybridus HOM05D005010 ORTHO05D006065 6.3e-29 131.7 81 70.4
AUR62004345 Chenopodium quinoa HOM05D005010 ORTHO05D006065 6.3e-29 131.7 103 59.2
BcaC01g00726 Brassica carinata HOM05D005010 ORTHO05D006065 8.2e-29 131.3 80 72.5
Oeu034880.2 Olea europaea HOM05D005010 ORTHO05D006065 8.2e-29 131.3 80 75.0
Sp7g19030 Schrenkiella parvula HOM05D005010 ORTHO05D006065 8.2e-29 131.3 80 73.8
EL10Ac1g00427 Beta vulgaris HOM05D005010 ORTHO05D006065 1.1e-28 131.0 81 70.4
BcaC01g00732 Brassica carinata HOM05D005010 ORTHO05D006065 1.1e-28 131.0 80 73.8
A08p15390 Brassica napus HOM05D005010 ORTHO05D006065 1.1e-28 131.0 80 73.8
BolC3t20645H Brassica oleracea HOM05D005010 ORTHO05D006065 1.1e-28 131.0 80 73.8
BraA08t33517Z Brassica rapa HOM05D005010 ORTHO05D006065 1.1e-28 131.0 80 73.8
Lsat_1_v5_gn_4_36200 Lactuca sativa HOM05D005010 ORTHO05D006065 1.1e-28 131.0 79 75.9
Sed0013033 Sechium edule HOM05D005010 ORTHO05D006065 1.1e-28 131.0 80 73.8
Migut.B01743 Erythranthe guttata HOM05D005010 ORTHO05D006065 1.8e-28 130.2 81 72.8
Lj4g0008215 Lotus japonicus HOM05D005010 ORTHO05D006065 1.8e-28 130.2 80 73.8
Zm00001eb001180 Zea mays HOM05D005010 ORTHO05D006065 1.8e-28 130.2 80 73.8
Carub.0007s2048 Capsella rubella HOM05D005010 ORTHO05D006065 2.4e-28 129.8 80 71.2
CARHR227510 Cardamine hirsuta HOM05D005010 ORTHO05D006065 2.4e-28 129.8 80 71.2
Thhalv10025283m.g Eutrema salsugineum HOM05D005010 ORTHO05D006065 3.1e-28 129.4 80 73.8
Potri.014G083000 Populus trichocarpa HOM05D005010 ORTHO05D006065 3.1e-28 129.4 80 68.8
Aqoxy3G02565 Aquilegia oxysepala HOM05D005010 ORTHO05D006065 6.9e-28 128.3 80 71.2
AT4G20960 Arabidopsis thaliana HOM05D005010 ORTHO05D006065 6.9e-28 128.3 80 70.0
HanXRQChr16g0522801 Helianthus annuus HOM05D005010 ORTHO05D006065 9.0e-28 127.9 79 72.2
Oeu058611.3 Olea europaea HOM05D005010 ORTHO05D006065 9.0e-28 127.9 80 72.5
MSTRG.17259 Avicennia marina HOM05D005010 ORTHO05D006065 1.2e-27 127.5 80 73.8
SEGI_16261 Sequoiadendron giganteum HOM05D005010 ORTHO05D006065 1.2e-27 127.5 79 72.2
C03p83660 Brassica napus HOM05D005010 ORTHO05D006065 2.0e-27 126.7 80 71.2
THA.LOC104812937 Tarenaya hassleriana HOM05D005010 ORTHO05D006065 2.0e-27 126.7 80 70.0
HanXRQChr16g0522791 Helianthus annuus HOM05D005010 ORTHO05D006065 4.5e-27 125.6 79 70.9
Os03g0117200 Oryza sativa ssp. japonica HOM05D005010 ORTHO05D006065 1.3e-26 124.0 81 74.1
Os04g0177400 Oryza sativa ssp. japonica HOM05D005010 ORTHO05D006065 6.5e-26 121.7 81 71.6
CBR_g12386 Chara braunii HOM05D005010 ORTHO05D006065 3.2e-25 119.4 79 64.6
Pp3c7_11900 Physcomitrium patens HOM05D005010 ORTHO05D006065 1.6e-24 117.1 79 63.3
AagrBONN_evm.TU.Sc2ySwM_228.296 Anthoceros agrestis HOM05D005010 ORTHO05D006065 4.6e-24 115.5 83 60.2
SMO119G0342 Selaginella moellendorffii HOM05D005010 ORTHO05D006065 5.1e-23 112.1 83 59.0
Mapoly0008s0021 Marchantia polymorpha HOM05D005010 ORTHO05D006065 4.8e-21 105.5 80 57.5
Eucgr.D00187 Eucalyptus grandis HOM05D005010 ORTHO05D006065 1.1e-20 104.4 80 67.5
BcaNung05416 Brassica carinata HOM05D005010 ORTHO05D006065 2.4e-20 103.2 76 64.5
arahy.Tifrunner.gnm1.ann1.J3VGT8 Arachis hypogaea HOM05D005010 ORTHO05D006065 5.3e-20 102.1 80 62.5
BcaNung05412 Brassica carinata HOM05D005010 ORTHO05D006065 5.3e-20 102.1 59 78.0
C07p51010 Brassica napus HOM05D005010 ORTHO05D006065 1.2e-19 100.9 62 72.6
BolC7t45602H Brassica oleracea HOM05D005010 ORTHO05D006065 3.4e-19 99.4 62 71.0
BraA03t14331Z Brassica rapa HOM05D005010 ORTHO05D006065 1.0e-18 97.8 62 71.0
Cre12.g555951 Chlamydomonas reinhardtii HOM05D005010 ORTHO05D006065 4.6e-16 89.0 81 49.4
BcaB03g11707 Brassica carinata HOM05D005010 ORTHO05D006065 3.0e-15 86.3 80 52.5
Pp3s30_1010 Physcomitrium patens HOM05D000723 ORTHO05D004839 3.0e-15 86.3 79 44.3
MCO15G184 Micromonas commoda HOM05D005010 ORTHO05D006065 3.3e-14 82.8 73 50.7
PRCOL_00002917 Prasinoderma coloniale HOM05D005010 ORTHO05D006065 8.2e-13 78.2 82 47.6
Gohir.D08G043500 Gossypium hirsutum HOM05D005010 ORTHO05D006065 1.1e-09 67.8 44 72.7
vmacro14577 Vaccinium macrocarpon HOM05D005010 ORTHO05D006065 1.4e-07 60.8 42 71.4
Actinidia20915 Actinidia chinensis HOM05D005010 ORTHO05D006065 3.3e-06 56.2 33 78.8


User provided reference genes

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