Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G3876 Fragaria x ananassa HOM05D006040 ORTHO05D007134 4.4e-269 930.6 446 100.0
FAN10G2970 Fragaria x ananassa HOM05D006040 ORTHO05D007134 6.0e-266 920.2 446 98.9
FAN03G3503 Fragaria x ananassa HOM05D006040 ORTHO05D007134 9.5e-264 912.9 446 97.5
RcHm_v2.0_Chr1g0383341 Rosa chinensis HOM05D006040 ORTHO05D007134 9.2e-243 843.2 446 90.1
FvH4_7g32290 Fragaria vesca HOM05D006040 ORTHO05D007134 7.8e-234 813.5 449 88.0
FAN20G2114 Fragaria x ananassa HOM05D006040 ORTHO05D007134 1.3e-233 812.8 449 87.8
FAN06G3790 Fragaria x ananassa HOM05D006040 ORTHO05D007134 7.1e-227 790.4 442 86.7
Prupe.2G322500 Prunus persica HOM05D006040 ORTHO05D007134 7.7e-197 690.6 451 75.2
MD07G1303900 Malus domestica HOM05D006040 ORTHO05D007134 1.4e-185 653.3 446 73.3
FvH4_7g33360 Fragaria vesca HOM05D006040 ORTHO05D007134 1.6e-170 603.2 305 94.8
Cfa018660 Carpinus fangiana HOM05D006040 ORTHO05D007134 1.6e-154 550.1 459 59.9
QL01p000066 Quercus lobata HOM05D006040 ORTHO05D007134 2.8e-154 549.3 483 57.3
Dinv29187 Davidia involucrata HOM05D006040 ORTHO05D007134 3.1e-153 545.8 469 60.6
CANSAT21G0186 Cannabis sativa HOM05D006040 ORTHO05D007134 1.9e-150 536.6 443 59.6
Lalb_Chr10g0102951 Lupinus albus HOM05D006040 ORTHO05D007134 2.0e-149 533.1 472 58.1
FAN01G0445 Fragaria x ananassa HOM05D006040 ORTHO05D007134 3.5e-149 532.3 446 65.7
TWI13G0007 Tripterygium wilfordii HOM05D006040 ORTHO05D007134 3.3e-147 525.8 446 57.0
TWI74G0239 Tripterygium wilfordii HOM05D006040 ORTHO05D007134 3.3e-147 525.8 446 57.0
TAR375G0263 Trochodendron aralioides HOM05D006040 ORTHO05D007134 4.3e-147 525.4 473 56.4
CsaV3_2G035690 Cucumis sativus L. HOM05D006040 ORTHO05D007134 4.7e-146 521.9 464 55.6
arahy.Tifrunner.gnm1.ann1.53C9AK Arachis hypogaea HOM05D006040 ORTHO05D007134 2.6e-144 516.2 459 56.9
arahy.Tifrunner.gnm1.ann1.QSB9JP Arachis hypogaea HOM05D006040 ORTHO05D007134 2.6e-144 516.2 459 57.3
ClCG02G007980 Citrullus lanatus HOM05D006040 ORTHO05D007134 4.4e-144 515.4 466 55.4
Sed0006638 Sechium edule HOM05D006040 ORTHO05D007134 5.8e-144 515.0 457 55.1
Potri.012G004300 Populus trichocarpa HOM05D006040 ORTHO05D007134 7.5e-144 514.6 454 56.6
Manes.05G196800 Manihot esculenta HOM05D006040 ORTHO05D007134 1.6e-141 506.9 454 56.8
Medtr5g068730 Medicago truncatula HOM05D006040 ORTHO05D007134 6.6e-140 501.5 450 56.9
Glyma.02G220600 Glycine max HOM05D006040 ORTHO05D007134 5.6e-139 498.4 454 55.9
TPR.G27916 Trifolium pratense HOM05D006040 ORTHO05D007134 5.6e-139 498.4 451 57.0
PGR042G3864 Punica granatum HOM05D006040 ORTHO05D007134 4.7e-138 495.4 457 54.3
Psat2g061600 Pisum sativum HOM05D006040 ORTHO05D007134 6.2e-138 495.0 447 56.8
Eucgr.A00979 Eucalyptus grandis HOM05D006040 ORTHO05D007134 1.5e-136 490.3 461 54.9
Actinidia18692 Actinidia chinensis HOM05D006040 ORTHO05D007134 2.6e-136 489.6 460 55.7
Ca_05537_v3 Cicer arietinum L. HOM05D006040 ORTHO05D007134 7.5e-136 488.0 449 56.6
Atru.chr12.2497 Acer truncatum HOM05D006040 ORTHO05D007134 3.7e-135 485.7 445 56.6
Atru.chr12.2521 Acer truncatum HOM05D006040 ORTHO05D007134 3.7e-135 485.7 445 56.6
Hma1.2p1_1235F.1_g269220 Hydrangea macrophylla HOM05D006040 ORTHO05D007134 6.4e-135 485.0 473 54.3
Sabra12G0000200 Salix brachista HOM05D006040 ORTHO05D007134 2.4e-134 483.0 423 56.3
Rhsim09G0211300 Rhododendron simsii HOM05D006040 ORTHO05D007134 3.2e-134 482.6 457 56.0
MELO3C024776.2 Cucumis melo HOM05D006040 ORTHO05D007134 4.1e-134 482.3 426 56.3
Thecc.03G212500 Theobroma cacao HOM05D006040 ORTHO05D007134 1.0e-132 477.6 444 56.1
LjContig00155g0021870 Lotus japonicus HOM05D006040 ORTHO05D007134 3.0e-132 476.1 444 55.9
GSVIVG01038686001 Vitis vinifera HOM05D006040 ORTHO05D007134 5.1e-132 475.3 462 54.1
PSO063G2217 Papaver somniferum HOM05D006040 ORTHO05D007134 1.1e-131 474.2 474 52.7
Aqoxy3G00220 Aquilegia oxysepala HOM05D006040 ORTHO05D007134 3.6e-130 469.2 462 52.2
PSO017G1458 Papaver somniferum HOM05D006040 ORTHO05D007134 1.2e-128 464.2 474 51.9
Gorai.004G126800 Gossypium raimondii HOM05D006040 ORTHO05D007134 4.2e-126 455.7 449 53.0
VMungo0647G0797 Vigna mungo HOM05D006040 ORTHO05D007134 4.6e-125 452.2 430 54.2
Cc02_g00560 Coffea canephora HOM05D006040 ORTHO05D007134 2.3e-124 449.9 465 50.8
SalBow2G1501 Salvia bowleyana HOM05D006040 ORTHO05D007134 8.7e-124 448.0 459 51.9
Lj1g0004094 Lotus japonicus HOM05D006040 ORTHO05D007134 1.9e-123 446.8 455 50.8
TPR.G35913 Trifolium pratense HOM05D006040 ORTHO05D007134 6.2e-122 441.8 446 50.4
Nitab4.5_0000115g0200 Nicotiana tabacum HOM05D006040 ORTHO05D007134 8.1e-122 441.4 457 49.7
Zm00001eb209800 Zea mays HOM05D006040 ORTHO05D007134 1.8e-121 440.3 460 50.0
Lalb_Chr08g0239381 Lupinus albus HOM05D006040 ORTHO05D007134 2.4e-121 439.9 456 50.7
Lj3C891T14 Lonicera japonica HOM05D006040 ORTHO05D007134 3.1e-121 439.5 373 59.0
PGSC0003DMG400026928 Solanum tuberosum HOM05D006040 ORTHO05D007134 1.5e-120 437.2 459 50.8
Os02g0106700 Oryza sativa ssp. japonica HOM05D006040 ORTHO05D007134 6.4e-119 431.8 464 49.6
Sopen06g029320 Solanum pennellii HOM05D006040 ORTHO05D007134 8.4e-119 431.4 459 50.3
Solyc06g072970.3 Solanum lycopersicum HOM05D006040 ORTHO05D007134 1.4e-118 430.6 459 50.1
Medtr3g093420 Medicago truncatula HOM05D006040 ORTHO05D007134 3.2e-118 429.5 444 50.2
DCAR_010554 Daucus carota HOM05D006040 ORTHO05D007134 7.1e-118 428.3 453 51.2
EL10Ac3g05126 Beta vulgaris HOM05D006040 ORTHO05D007134 1.2e-117 427.6 462 47.2
Nitab4.5_0003012g0150 Nicotiana tabacum HOM05D006040 ORTHO05D007134 2.1e-117 426.8 498 46.0
Hund21080 Selenicereus undatus HOM05D006040 ORTHO05D007134 2.7e-117 426.4 455 47.3
Zm00001eb229510 Zea mays HOM05D006040 ORTHO05D007134 2.7e-117 426.4 460 49.6
AUR62005943 Chenopodium quinoa HOM05D006040 ORTHO05D007134 5.1e-116 422.2 458 46.3
AUR62028121 Chenopodium quinoa HOM05D006040 ORTHO05D007134 3.3e-115 419.5 458 46.3
SGA_v2.0_scaffold59G20786 Striga asiatica HOM05D006040 ORTHO05D007134 2.1e-114 416.8 450 48.7
MSTRG.18 Avicennia marina HOM05D006040 ORTHO05D007134 6.2e-114 415.2 451 50.3
Glyma.06G139400 Glycine max HOM05D006040 ORTHO05D007134 3.1e-113 412.9 453 49.7
ATR0579G018 Amborella trichopoda HOM05D006040 ORTHO05D007134 4.0e-113 412.5 449 48.8
Migut.F00965 Erythranthe guttata HOM05D006040 ORTHO05D007134 2.0e-112 410.2 441 49.0
Ca_16841_v3 Cicer arietinum L. HOM05D006040 ORTHO05D007134 5.8e-112 408.7 373 53.6
Cpa.g.sc3.191 Carica papaya HOM05D006040 ORTHO05D007134 2.9e-111 406.4 401 53.9
CSS0020482 Camellia sinensis var. sinensis HOM05D006040 ORTHO05D007134 1.1e-110 404.4 378 54.2
Peaxi162Scf00815g00228 Petunia axillaris HOM05D006040 ORTHO05D007134 1.1e-110 404.4 396 52.3
FvH4_7g33700 Fragaria vesca HOM05D006040 ORTHO05D007134 1.4e-110 404.1 425 55.1
Phvul.009G040600 Phaseolus vulgaris HOM05D006040 ORTHO05D007134 1.4e-110 404.1 458 47.4
HanXRQChr14g0463001 Helianthus annuus HOM05D006040 ORTHO05D007134 2.7e-109 399.8 436 50.0
CAN.G65.140 Capsicum annuum HOM05D006040 ORTHO05D007134 3.0e-108 396.4 377 53.3
THA.LOC104798996 Tarenaya hassleriana HOM05D006040 ORTHO05D007134 2.5e-107 393.3 452 47.1
Psat5g070440 Pisum sativum HOM05D006040 ORTHO05D007134 7.4e-107 391.7 373 51.7
Phvul.008G187700 Phaseolus vulgaris HOM05D006040 ORTHO05D007134 3.7e-106 389.4 390 51.5
ECA238G4129 Erigeron canadensis HOM05D006040 ORTHO05D007134 1.8e-105 387.1 439 46.9
Sc25g0001060 Simmondsia chinensis HOM05D006040 ORTHO05D007134 1.2e-104 384.4 370 51.4
HPP92_012812 Vanilla planifolia HOM05D006040 ORTHO05D007134 1.2e-104 384.4 457 47.0
Gohir.A08G107000 Gossypium hirsutum HOM05D006040 ORTHO05D007134 4.9e-103 379.0 449 47.9
Thhalv10004343m.g Eutrema salsugineum HOM05D006040 ORTHO05D007134 1.1e-102 377.9 452 45.4
Lsat_1_v5_gn_8_36881 Lactuca sativa HOM05D006040 ORTHO05D007134 1.4e-102 377.5 450 45.6
Carub.0006s2254 Capsella rubella HOM05D006040 ORTHO05D007134 3.2e-102 376.3 456 46.1
SEGI_40721 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 1.0e-100 371.3 480 44.0
Sp2g22720 Schrenkiella parvula HOM05D006040 ORTHO05D007134 8.7e-100 368.2 449 44.5
A06p35530 Brassica napus HOM05D006040 ORTHO05D007134 2.1e-98 363.6 450 45.8
BraA06t26478Z Brassica rapa HOM05D006040 ORTHO05D007134 2.8e-98 363.2 452 46.0
C07p43010 Brassica napus HOM05D006040 ORTHO05D007134 1.1e-97 361.3 450 46.2
AT5G24680 Arabidopsis thaliana HOM05D006040 ORTHO05D007134 1.8e-97 360.5 453 44.4
Haze_00002 Corylus avellana HOM05D006040 ORTHO05D007134 2.6e-96 356.7 310 56.8
BolC7t44830H Brassica oleracea HOM05D006040 ORTHO05D007134 4.5e-96 355.9 451 45.7
unitig_578.g16670 Utricularia gibba HOM05D006040 ORTHO05D007134 4.2e-94 349.4 373 48.3
AL6G36290 Arabidopsis lyrata HOM05D006040 ORTHO05D007134 6.1e-93 345.5 454 43.8
Glyma.14G187200 Glycine max HOM05D006040 ORTHO05D007134 1.6e-90 337.4 381 48.8
COL.COLO4_14403 Corchorus olitorius HOM05D002417 ORTHO05D002589 6.3e-90 335.5 341 51.6
Aa31LG11G3920 Aethionema arabicum HOM05D006040 ORTHO05D007134 6.1e-85 318.9 540 37.4
MBI12_g33183_MAGBIO Magnolia biondii HOM05D006040 ORTHO05D007134 5.7e-83 312.4 335 49.6
vmacro10175 Vaccinium macrocarpon HOM05D006040 ORTHO05D007134 4.1e-81 306.2 420 42.6
BcaNung01250 Brassica carinata HOM05D006040 ORTHO05D007134 1.5e-80 304.3 459 41.0
Duzib068G0842 Durio zibethinus HOM05D006040 ORTHO05D007134 1.8e-76 290.8 278 52.9
Pp3c12_6120 Physcomitrium patens HOM05D006040 ORTHO05D007134 8.8e-76 288.5 548 32.8
Pp3c13_14780 Physcomitrium patens HOM05D006040 ORTHO05D007134 5.3e-73 279.3 438 38.8
Glyma.04G225400 Glycine max HOM05D006040 ORTHO05D007134 5.5e-70 269.2 352 43.5
Pp3c20_10180 Physcomitrium patens HOM05D006040 ORTHO05D007134 1.6e-69 267.7 407 38.8
Pp3c25_2290 Physcomitrium patens HOM05D006040 ORTHO05D007134 3.3e-67 260.0 428 37.6
MD01G1231800 Malus domestica HOM05D006040 ORTHO05D007134 1.1e-65 255.0 162 72.2
Mapoly0044s0025 Marchantia polymorpha HOM05D006040 ORTHO05D007134 8.0e-61 238.8 530 30.8
CARHR188790 Cardamine hirsuta HOM05D006040 ORTHO05D007134 1.3e-58 231.5 243 49.4
VMungo1309G2872 Vigna mungo HOM05D006040 ORTHO05D007134 2.8e-58 230.3 355 39.4
Mapoly0088s0074 Marchantia polymorpha HOM05D006040 ORTHO05D007134 8.3e-58 228.8 554 30.0
Lalb_Chr14g0364691 Lupinus albus HOM05D006040 ORTHO05D007134 1.0e-55 221.9 216 54.6
Gohir.D08G118000 Gossypium hirsutum HOM05D006040 ORTHO05D007134 5.5e-54 216.1 381 37.3
CBR_g29958 Chara braunii HOM05D006040 ORTHO05D007134 1.5e-46 191.4 568 27.6
Pp3c23_1100 Physcomitrium patens HOM05D006040 ORTHO05D007134 4.9e-42 176.4 171 50.3
SEGI_39404 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 1.1e-41 175.3 157 53.5
SEGI_00936 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 2.7e-40 170.6 157 51.6
CBR_g3746 Chara braunii HOM05D000019 ORTHO05D000002 5.9e-40 169.5 134 54.5
FvH4_7g33361 Fragaria vesca HOM05D006040 ORTHO05D007134 1.5e-38 164.9 81 97.5
MD01G1231900 Malus domestica HOM05D006040 ORTHO05D007134 6.1e-37 159.5 103 74.8
Haze_17391 Corylus avellana HOM05D001765 ORTHO05D005876 3.3e-30 137.1 150 46.7
Oeu063747.1 Olea europaea HOM05D006040 ORTHO05D007134 8.3e-26 122.5 98 57.1
SMO347G0626 Selaginella moellendorffii HOM05D006040 ORTHO05D007134 1.4e-25 121.7 221 33.9
SEGI_38707 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 2.4e-25 120.9 157 40.8
CDE04G3558 Ceratophyllum demersum HOM05D006040 ORTHO05D007134 2.8e-13 80.9 58 63.8
Cre05.g240500 Chlamydomonas reinhardtii HOM05D006040 ORTHO05D007134 1.2e-11 75.5 83 49.4
SalBow2G3456 Salvia bowleyana HOM05D000168 ORTHO05D007134 4.9e-10 70.1 41 75.6
Oeu063748.2 Olea europaea HOM05D003307 ORTHO05D003798 3.5e-08 63.9 52 51.9


User provided reference genes

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