Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G3788 Fragaria x ananassa HOM05D012506 ORTHO05D003557 4.7e-261 904.4 619 100.0
FAN10G0189 Fragaria x ananassa HOM05D012506 ORTHO05D003557 3.3e-254 881.7 619 98.4
FvH4_7g33621 Fragaria vesca HOM05D012506 ORTHO05D003557 1.7e-218 763.1 663 76.3
FAN03G0789 Fragaria x ananassa HOM05D012506 ORTHO05D003557 1.7e-215 753.1 652 83.6
RcHm_v2.0_Chr1g0383881 Rosa chinensis HOM05D012506 ORTHO05D003557 4.2e-193 678.7 654 70.0
FAN01G2289 Fragaria x ananassa HOM05D012506 ORTHO05D003557 4.1e-180 635.6 502 91.6
FAN24G2560 Fragaria x ananassa HOM05D012506 ORTHO05D046285 6.2e-88 329.3 364 66.2
MD01G1233900 Malus domestica HOM05D004299 ORTHO05D003557 6.9e-63 246.1 652 37.1
MD07G1306000 Malus domestica HOM05D004299 ORTHO05D003557 1.1e-60 238.8 646 36.8
Prupe.2G324100 Prunus persica HOM05D004299 ORTHO05D003557 8.2e-56 222.6 676 36.5
FAN20G1396 Fragaria x ananassa HOM05D012506 ORTHO05D003557 1.7e-48 198.4 241 64.3
FAN20G3051 Fragaria x ananassa HOM05D012506 ORTHO05D003557 2.8e-48 197.6 290 60.0
FAN15G2281 Fragaria x ananassa HOM05D012506 ORTHO05D003557 1.1e-47 195.7 240 64.2
FvH4_2g06690 Fragaria vesca HOM05D012506 ORTHO05D046285 1.6e-46 191.8 237 62.9
FvH4_5g14120 Fragaria vesca HOM05D012506 ORTHO05D003557 8.0e-43 179.5 124 83.9
GSVIVG01024444001 Vitis vinifera HOM05D004299 ORTHO05D003557 2.4e-31 141.4 273 41.4
Atru.chr12.1996 Acer truncatum HOM05D004299 ORTHO05D003557 1.0e-26 125.9 234 44.0
Sabra13G0071500 Salix brachista HOM05D004299 ORTHO05D003557 5.2e-26 123.6 300 35.7
Haze_00596 Corylus avellana HOM05D004299 ORTHO05D003557 5.7e-25 120.2 407 33.2
FvH4_2g06700 Fragaria vesca HOM05D012506 ORTHO05D003557 7.5e-25 119.8 102 73.5
QL09p025753 Quercus lobata HOM05D004299 ORTHO05D003557 9.8e-25 119.4 378 33.9
Cfa015894 Carpinus fangiana HOM05D004299 ORTHO05D003557 4.9e-24 117.1 312 36.2
Sabra19G0058100 Salix brachista HOM05D004299 ORTHO05D003557 8.3e-24 116.3 300 36.0
CiPaw.05G237300 Carya illinoinensis HOM05D004299 ORTHO05D003557 7.0e-23 113.2 295 35.9
TPR.G8414 Trifolium pratense HOM05D004299 ORTHO05D003557 3.5e-22 110.9 267 37.8
Actinidia34301 Actinidia chinensis HOM05D004299 ORTHO05D003557 2.5e-20 104.8 244 35.2
Lj3g0021850 Lotus japonicus HOM05D004299 ORTHO05D003557 4.3e-20 104.0 245 40.8
Medtr4g077590 Medicago truncatula HOM05D004299 ORTHO05D003557 4.3e-20 104.0 229 38.9
Ca_04929_v3 Cicer arietinum L. HOM05D004299 ORTHO05D003557 1.6e-19 102.1 319 35.1
A02p03950 Brassica napus HOM05D004299 ORTHO05D003557 2.1e-19 101.7 272 34.9
CARHR196070 Cardamine hirsuta HOM05D004299 ORTHO05D003557 3.6e-19 100.9 277 33.9
Manes.09G124200 Manihot esculenta HOM05D004299 ORTHO05D003557 4.7e-19 100.5 276 34.1
Actinidia08739 Actinidia chinensis HOM05D004299 ORTHO05D003557 6.1e-19 100.1 198 38.4
COL.COLO4_06387 Corchorus olitorius HOM05D004299 ORTHO05D003557 1.4e-18 99.0 235 39.6
AL6G28200 Arabidopsis lyrata HOM05D004299 ORTHO05D003557 1.8e-18 98.6 271 35.1
BcaB01g04949 Brassica carinata HOM05D004299 ORTHO05D003557 1.8e-18 98.6 236 37.3
Eucgr.G02658 Eucalyptus grandis HOM05D004299 ORTHO05D003557 1.8e-18 98.6 333 33.0
Manes.08G164200 Manihot esculenta HOM05D004299 ORTHO05D003557 2.3e-18 98.2 359 32.3
BraA02t05360Z Brassica rapa HOM05D004299 ORTHO05D003557 3.0e-18 97.8 326 32.2
Lj3A889G76 Lonicera japonica HOM05D004299 ORTHO05D003557 4.0e-18 97.4 361 31.9
CsaV3_5G015680 Cucumis sativus L. HOM05D004299 ORTHO05D003557 5.2e-18 97.1 266 32.7
Nitab4.5_0005081g0100 Nicotiana tabacum HOM05D004299 ORTHO05D003557 6.8e-18 96.7 292 34.9
Potri.019G046801 Populus trichocarpa HOM05D004299 ORTHO05D003557 6.8e-18 96.7 319 32.3
Aa31LG5G13610 Aethionema arabicum HOM05D004299 ORTHO05D003557 1.2e-17 95.9 275 34.5
BcaC04g18829 Brassica carinata HOM05D004299 ORTHO05D003557 1.2e-17 95.9 179 41.9
BolC2t06791H Brassica oleracea HOM05D004299 ORTHO05D003557 1.2e-17 95.9 283 33.6
Glyma.12G018900 Glycine max HOM05D004299 ORTHO05D003557 1.2e-17 95.9 293 37.2
TWI34G1775 Tripterygium wilfordii HOM05D004299 ORTHO05D003557 1.5e-17 95.5 278 34.9
Cpa.g.sc39.57 Carica papaya HOM05D004299 ORTHO05D003557 2.0e-17 95.1 273 32.2
Duzib106G1502 Durio zibethinus HOM05D004299 ORTHO05D003557 2.0e-17 95.1 211 39.3
CARHR077150 Cardamine hirsuta HOM05D004299 ORTHO05D003557 2.6e-17 94.7 233 33.9
C03p09520 Brassica napus HOM05D004299 ORTHO05D003557 3.4e-17 94.4 212 37.7
BcaB08g36802 Brassica carinata HOM05D004299 ORTHO05D003557 4.4e-17 94.0 327 31.5
Dinv29171 Davidia involucrata HOM05D004299 ORTHO05D003557 4.4e-17 94.0 136 44.9
Glyma.11G092600 Glycine max HOM05D004299 ORTHO05D003557 4.4e-17 94.0 299 36.8
PGSC0003DMG400026934 Solanum tuberosum HOM05D004299 ORTHO05D003557 4.4e-17 94.0 298 30.5
C02p08770 Brassica napus HOM05D004299 ORTHO05D003557 7.5e-17 93.2 284 33.8
BcaC03g18533 Brassica carinata HOM05D004299 ORTHO05D003557 9.8e-17 92.8 309 32.4
Thhalv10013127m.g Eutrema salsugineum HOM05D004299 ORTHO05D003557 9.8e-17 92.8 334 29.6
PGR042G3162 Punica granatum HOM05D004299 ORTHO05D003557 9.8e-17 92.8 360 31.1
arahy.Tifrunner.gnm1.ann1.R3QID6 Arachis hypogaea HOM05D004299 ORTHO05D003557 1.7e-16 92.0 384 27.6
Gohir.D08G243500 Gossypium hirsutum HOM05D004299 ORTHO05D003557 2.2e-16 91.7 213 39.0
DCAR_014573 Daucus carota HOM05D004299 ORTHO05D003557 2.9e-16 91.3 250 33.2
THA.LOC104802916 Tarenaya hassleriana HOM05D004299 ORTHO05D003557 3.7e-16 90.9 361 29.6
BraA01t04590Z Brassica rapa HOM05D004299 ORTHO05D003557 6.4e-16 90.1 225 35.6
Nitab4.5_0000021g0310 Nicotiana tabacum HOM05D004299 ORTHO05D003557 6.4e-16 90.1 290 33.1
Gorai.004G259400 Gossypium raimondii HOM05D004299 ORTHO05D003557 8.3e-16 89.7 213 38.5
BcaB01g05216 Brassica carinata HOM05D004299 ORTHO05D003557 1.1e-15 89.4 359 30.4
BraA03t10142Z Brassica rapa HOM05D004299 ORTHO05D003557 1.1e-15 89.4 368 30.7
CsaV3_5G005290 Cucumis sativus L. HOM05D013728 ORTHO05D003557 1.4e-15 89.0 701 26.1
Gohir.A08G223300 Gossypium hirsutum HOM05D004299 ORTHO05D003557 1.4e-15 89.0 199 38.7
Hma1.2p1_0758F.1_g213620 Hydrangea macrophylla HOM05D004299 ORTHO05D003557 1.4e-15 89.0 186 38.7
AT5G17160 Arabidopsis thaliana HOM05D004299 ORTHO05D003557 1.9e-15 88.6 274 31.8
C03p60040 Brassica napus HOM05D004299 ORTHO05D003557 1.9e-15 88.6 172 40.1
BolC3t18269H Brassica oleracea HOM05D004299 ORTHO05D003557 1.9e-15 88.6 172 40.1
Psat7g171480 Pisum sativum HOM05D004299 ORTHO05D003557 1.9e-15 88.6 282 31.6
Solyc06g072810.4 Solanum lycopersicum HOM05D004299 ORTHO05D003557 2.4e-15 88.2 305 31.1
ClCG01G005040 Citrullus lanatus HOM05D013728 ORTHO05D003557 3.2e-15 87.8 715 25.6
Peaxi162Scf00815g00349 Petunia axillaris HOM05D004299 ORTHO05D003557 3.2e-15 87.8 301 30.2
AT3G03130 Arabidopsis thaliana HOM05D004299 ORTHO05D003557 4.1e-15 87.4 242 35.5
Carub.0006s1534 Capsella rubella HOM05D004299 ORTHO05D003557 5.4e-15 87.0 264 34.8
arahy.Tifrunner.gnm1.ann1.KHZX7Q Arachis hypogaea HOM05D004299 ORTHO05D003557 7.0e-15 86.7 386 28.2
A03p08220 Brassica napus HOM05D004299 ORTHO05D003557 7.0e-15 86.7 318 31.8
Nitab4.5_0000115g0360 Nicotiana tabacum HOM05D004299 ORTHO05D003557 7.0e-15 86.7 272 29.8
Ciclev10023566m.g Citrus clementina HOM05D004299 ORTHO05D003557 9.2e-15 86.3 197 37.6
Duzib128G1020 Durio zibethinus HOM05D004299 ORTHO05D003557 9.2e-15 86.3 146 45.9
ECA247G1921 Erigeron canadensis HOM05D004299 ORTHO05D003557 9.2e-15 86.3 241 33.6
CSS0016343 Camellia sinensis var. sinensis HOM05D004299 ORTHO05D003557 1.2e-14 85.9 362 30.9
ECA246G3276 Erigeron canadensis HOM05D004299 ORTHO05D003557 1.2e-14 85.9 260 35.4
Rhsim03G0220700 Rhododendron simsii HOM05D004299 ORTHO05D003557 2.0e-14 85.1 316 31.3
Carub.0003s0228 Capsella rubella HOM05D004299 ORTHO05D003557 2.7e-14 84.7 238 35.7
Lalb_Chr01g0001001 Lupinus albus HOM05D004299 ORTHO05D003557 2.7e-14 84.7 274 32.8
Nitab4.5_0002193g0040 Nicotiana tabacum HOM05D004299 ORTHO05D003557 2.7e-14 84.7 270 28.9
CSS0010494 Camellia sinensis var. sinensis HOM05D004299 ORTHO05D003557 3.5e-14 84.3 362 30.7
vmacro06502 Vaccinium macrocarpon HOM05D004299 ORTHO05D003557 4.6e-14 84.0 329 30.4
Sed0018309 Sechium edule HOM05D004299 ORTHO05D003557 1.3e-13 82.4 358 29.3
Sp6g27070 Schrenkiella parvula HOM05D004299 ORTHO05D003557 1.7e-13 82.0 330 30.9
A06p26270 Brassica napus HOM05D004299 ORTHO05D003557 2.3e-13 81.6 346 30.1
BNapus_Darmor_BZH_scaffold_78p00020 Brassica napus HOM05D004299 ORTHO05D003557 2.3e-13 81.6 346 30.1
Peaxi162Scf00745g00852 Petunia axillaris HOM05D004299 ORTHO05D003557 2.3e-13 81.6 276 30.4
BNapus_Darmor_BZH_scaffold_162p00030 Brassica napus HOM05D004299 ORTHO05D003557 6.6e-13 80.1 322 32.0
BolC1t05844H Brassica oleracea HOM05D004299 ORTHO05D003557 6.6e-13 80.1 322 32.0
MELO3C005430.2 Cucumis melo HOM05D013728 ORTHO05D003557 6.6e-13 80.1 718 25.9
Lalb_Chr09g0320301 Lupinus albus HOM05D004299 ORTHO05D003557 6.6e-13 80.1 260 33.1
Cc02_g00400 Coffea canephora HOM05D004299 ORTHO05D003557 8.6e-13 79.7 139 42.4
Sopen06g029190 Solanum pennellii HOM05D004299 ORTHO05D003557 8.6e-13 79.7 404 28.5
BolC3t13447H Brassica oleracea HOM05D004299 ORTHO05D003557 1.1e-12 79.3 366 30.6
Sp3g02170 Schrenkiella parvula HOM05D004299 ORTHO05D003557 1.1e-12 79.3 192 32.8
Sed0000182 Sechium edule HOM05D004299 ORTHO05D003557 1.1e-12 79.3 260 31.2
Phvul.011G021300 Phaseolus vulgaris HOM05D004299 ORTHO05D003557 1.5e-12 79.0 374 30.7
VMungo1127G2117 Vigna mungo HOM05D004299 ORTHO05D003557 1.5e-12 79.0 340 31.5
Potri.013G081600 Populus trichocarpa HOM05D004299 ORTHO05D003557 2.5e-12 78.2 727 26.3
AL3G12740 Arabidopsis lyrata HOM05D004299 ORTHO05D003557 9.5e-12 76.3 223 31.4
CANSAT35G1347 Cannabis sativa HOM05D004299 ORTHO05D003557 9.5e-12 76.3 147 42.9
Oeu061066.1 Olea europaea HOM05D004299 ORTHO05D003557 1.2e-11 75.9 342 28.9
TAR374G0649 Trochodendron aralioides HOM05D004299 ORTHO05D003557 1.2e-11 75.9 259 29.7
TAR374G1619 Trochodendron aralioides HOM05D004299 ORTHO05D003557 1.2e-11 75.9 259 29.7
Nn3g19291 Nelumbo nucifera HOM05D004299 ORTHO05D003557 1.6e-11 75.5 338 30.2
PSO017G1908 Papaver somniferum HOM05D004299 ORTHO05D003557 1.6e-11 75.5 216 34.7
MBI04_g44838_MAGBIO Magnolia biondii HOM05D027374 ORTHO05D030041 2.8e-11 74.7 125 37.6
SalBow2G2429 Salvia bowleyana HOM05D004299 ORTHO05D003557 4.7e-11 73.9 276 32.2
Lsat_1_v5_gn_3_37901 Lactuca sativa HOM05D004299 ORTHO05D003557 1.1e-10 72.8 387 27.6
PSO478G4400 Papaver somniferum HOM05D018639 ORTHO05D003557 1.4e-10 72.4 221 34.4
Nn1g01977 Nelumbo nucifera HOM05D004299 ORTHO05D003557 1.8e-10 72.0 123 40.7
Sc19g0000210 Simmondsia chinensis HOM05D004299 ORTHO05D003557 6.8e-10 70.1 268 31.3
PSO782G5567 Papaver somniferum HOM05D018639 ORTHO05D003557 2.6e-09 68.2 142 39.4
HanXRQChr17g0554401 Helianthus annuus HOM05D004299 ORTHO05D003557 3.4e-09 67.8 279 29.0
RcHm_v2.0_Chr4g0397811 Rosa chinensis HOM05D012506 ORTHO05D003557 4.4e-09 67.4 53 73.6
EL10Ac3g05093 Beta vulgaris HOM05D022644 ORTHO05D003557 7.5e-09 66.6 343 28.0
Lsat_1_v5_gn_8_135240 Lactuca sativa HOM05D004299 ORTHO05D003557 9.8e-09 66.2 300 28.7
Hund21092 Selenicereus undatus HOM05D004299 ORTHO05D003557 9.8e-09 66.2 243 30.9
Lsat_1_v5_gn_3_37921 Lactuca sativa HOM05D004299 ORTHO05D003557 1.3e-08 65.9 283 27.2
PSO478G3049 Papaver somniferum HOM05D004299 ORTHO05D003557 4.9e-08 63.9 59 55.9
SalBow4G2051 Salvia bowleyana HOM05D004299 ORTHO05D003557 8.3e-08 63.2 284 29.6
Aqoxy3G02070 Aquilegia oxysepala HOM05D004299 ORTHO05D003557 1.1e-07 62.8 249 31.7
MSTRG.13 Avicennia marina HOM05D004299 ORTHO05D003557 1.1e-07 62.8 291 29.6
PSO063G4917 Papaver somniferum HOM05D018639 ORTHO05D003557 2.4e-07 61.6 220 31.8
AUR62028156 Chenopodium quinoa HOM05D022644 ORTHO05D003557 5.4e-07 60.5 278 30.6
Os04g0597900 Oryza sativa ssp. japonica HOM05D021310 ORTHO05D003557 5.4e-07 60.5 168 32.7
unitig_52.g17695 Utricularia gibba HOM05D004299 ORTHO05D003557 7.0e-07 60.1 277 27.8
HanXRQChr17g0541651 Helianthus annuus HOM05D004299 ORTHO05D003557 9.2e-07 59.7 39 71.8
AUR62005909 Chenopodium quinoa HOM05D022644 ORTHO05D003557 1.2e-06 59.3 303 26.7
MELO3C026562.2 Cucumis melo HOM05D004299 ORTHO05D003557 1.2e-06 59.3 92 42.4
Thecc.05G208300 Theobroma cacao HOM05D004299 ORTHO05D003557 1.2e-06 59.3 692 24.9
Zm00001eb430160 Zea mays HOM05D033178 ORTHO05D037852 1.2e-06 59.3 135 36.3
Lalb_Chr16g0376621 Lupinus albus HOM05D004299 ORTHO05D003557 1.6e-06 58.9 315 26.3
PSO675G1109 Papaver somniferum HOM05D018639 ORTHO05D037265 1.6e-06 58.9 322 26.4
Migut.F00952 Erythranthe guttata HOM05D004299 ORTHO05D003557 2.1e-06 58.5 337 26.1
COL.COLO4_29877 Corchorus olitorius HOM05D013130 ORTHO05D022454 3.5e-06 57.8 57 52.6
SGA_v2.0_scaffold50G18437 Striga asiatica HOM05D024109 ORTHO05D003557 3.5e-06 57.8 33 78.8
Ah.04g157210 Amaranthus hybridus HOM05D022644 ORTHO05D003557 4.6e-06 57.4 234 29.9
AUR62034598 Chenopodium quinoa HOM05D022644 ORTHO05D003557 4.6e-06 57.4 46 58.7
CDE11G0117 Ceratophyllum demersum HOM05D004299 ORTHO05D003557 6.0e-06 57.0 299 26.4


User provided reference genes

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