Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G3769 Fragaria x ananassa HOM05D001384 ORTHO05D001215 4.8e-23 110.9 86 100.0
FAN01G1051 Fragaria x ananassa HOM05D001384 ORTHO05D001215 9.1e-22 106.7 86 89.5
FAN10G1694 Fragaria x ananassa HOM05D001384 ORTHO05D001215 1.0e-20 103.2 86 94.2
FAN06G2635 Fragaria x ananassa HOM05D001384 ORTHO05D001215 1.7e-20 102.4 86 93.0
FAN06G3780 Fragaria x ananassa HOM05D001384 ORTHO05D001215 1.7e-20 102.4 86 91.9
RcHm_v2.0_Chr1g0358781 Rosa chinensis HOM05D001384 ORTHO05D001215 5.0e-20 100.9 86 88.4
FAN03G0436 Fragaria x ananassa HOM05D001384 ORTHO05D001215 8.5e-20 100.1 86 93.0
Prupe.2G183500 Prunus persica HOM05D001384 ORTHO05D001215 8.3e-15 83.6 92 58.7
MD07G1144900 Malus domestica HOM05D001384 ORTHO05D001215 5.4e-14 80.9 97 67.0
MD01G1076000 Malus domestica HOM05D001384 ORTHO05D001215 4.5e-13 77.8 97 74.2
TAR375G0324 Trochodendron aralioides HOM05D001384 ORTHO05D001215 1.3e-12 76.3 38 100.0
Hma1.2p1_0384F.1_g141070 Hydrangea macrophylla HOM05D001384 ORTHO05D001215 3.8e-12 74.7 38 94.7
TAR636G2986 Trochodendron aralioides HOM05D001384 ORTHO05D001215 3.8e-12 74.7 79 67.1
Duzib133G0751 Durio zibethinus HOM05D001384 ORTHO05D001215 5.0e-12 74.3 79 58.2
Duzib138G1328 Durio zibethinus HOM05D001384 ORTHO05D001215 5.0e-12 74.3 38 97.4
Thecc.01G347500 Theobroma cacao HOM05D001384 ORTHO05D001215 5.0e-12 74.3 38 97.4
Actinidia02805 Actinidia chinensis HOM05D001384 ORTHO05D001215 6.6e-12 73.9 37 97.3
ClCG05G001090 Citrullus lanatus HOM05D001384 ORTHO05D001215 6.6e-12 73.9 36 100.0
Gohir.A11G094700 Gossypium hirsutum HOM05D001384 ORTHO05D001215 6.6e-12 73.9 38 97.4
Gohir.D11G099700 Gossypium hirsutum HOM05D001384 ORTHO05D001215 6.6e-12 73.9 38 97.4
Gorai.007G105900 Gossypium raimondii HOM05D001384 ORTHO05D001215 6.6e-12 73.9 38 97.4
Manes.05G026100 Manihot esculenta HOM05D001384 ORTHO05D001215 6.6e-12 73.9 38 94.7
Sed0001168 Sechium edule HOM05D001384 ORTHO05D001215 6.6e-12 73.9 36 100.0
Gohir.A10G068700 Gossypium hirsutum HOM05D001384 ORTHO05D001215 8.6e-12 73.6 38 94.7
Actinidia28493 Actinidia chinensis HOM05D001384 ORTHO05D001215 1.1e-11 73.2 37 97.3
CsaV3_3G008420 Cucumis sativus L. HOM05D001384 ORTHO05D001215 1.1e-11 73.2 37 94.6
GSVIVG01027049001 Vitis vinifera HOM05D001384 ORTHO05D001215 1.1e-11 73.2 38 94.7
Gohir.A12G110700 Gossypium hirsutum HOM05D001384 ORTHO05D001215 1.5e-11 72.8 38 94.7
Gohir.D12G114000 Gossypium hirsutum HOM05D001384 ORTHO05D001215 1.5e-11 72.8 38 94.7
Gorai.008G123500 Gossypium raimondii HOM05D001384 ORTHO05D001215 1.5e-11 72.8 38 94.7
PGSC0003DMG400000207 Solanum tuberosum HOM05D001384 ORTHO05D001215 1.5e-11 72.8 38 92.1
COL.COLO4_06332 Corchorus olitorius HOM05D001384 ORTHO05D001215 1.9e-11 72.4 37 97.3
Gohir.A10G199650 Gossypium hirsutum HOM05D001384 ORTHO05D001215 1.9e-11 72.4 38 94.7
Sabra02G0144100 Salix brachista HOM05D001384 ORTHO05D001215 1.9e-11 72.4 38 92.1
Cpa.g.sc194.9 Carica papaya HOM05D001384 ORTHO05D001215 2.5e-11 72.0 37 97.3
Nitab4.5_0000305g0110 Nicotiana tabacum HOM05D001384 ORTHO05D001215 2.5e-11 72.0 38 92.1
Actinidia20196 Actinidia chinensis HOM05D001384 ORTHO05D001215 3.3e-11 71.6 37 94.6
Haze_15620 Corylus avellana HOM05D001384 ORTHO05D001215 3.3e-11 71.6 38 94.7
Gohir.A07G139600 Gossypium hirsutum HOM05D001384 ORTHO05D001215 3.3e-11 71.6 38 92.1
Gohir.D07G144700 Gossypium hirsutum HOM05D001384 ORTHO05D001215 3.3e-11 71.6 38 92.1
Gorai.001G156700 Gossypium raimondii HOM05D001384 ORTHO05D001215 3.3e-11 71.6 38 92.1
Potri.014G094800 Populus trichocarpa HOM05D001384 ORTHO05D001215 3.3e-11 71.6 86 61.6
vmacro22519 Vaccinium macrocarpon HOM05D001384 ORTHO05D001215 3.3e-11 71.6 37 94.6
FvH4_7g15910 Fragaria vesca HOM05D001384 ORTHO05D001215 4.2e-11 71.2 68 97.1
Dinv32554 Davidia involucrata HOM05D001384 ORTHO05D001215 5.5e-11 70.9 37 97.3
Solyc01g095515.1 Solanum lycopersicum HOM05D001384 ORTHO05D001215 7.2e-11 70.5 38 89.5
Sopen01g039270 Solanum pennellii HOM05D001384 ORTHO05D001215 7.2e-11 70.5 38 89.5
TWI59G0487 Tripterygium wilfordii HOM05D001384 ORTHO05D001215 7.2e-11 70.5 37 91.9
Nitab4.5_0009232g0020 Nicotiana tabacum HOM05D001384 ORTHO05D001215 9.5e-11 70.1 38 89.5
Dinv43894 Davidia involucrata HOM05D001384 ORTHO05D001215 1.2e-10 69.7 37 94.6
Solyc10g011730.3 Solanum lycopersicum HOM05D001384 ORTHO05D001215 1.2e-10 69.7 38 86.8
Sopen10g005520 Solanum pennellii HOM05D001384 ORTHO05D001215 1.2e-10 69.7 38 86.8
THA.LOC104817336 Tarenaya hassleriana HOM05D001384 ORTHO05D001215 1.2e-10 69.7 38 86.8
Aa31LG10G15620 Aethionema arabicum HOM05D001384 ORTHO05D001215 1.6e-10 69.3 39 92.3
Rhsim01G0169300 Rhododendron simsii HOM05D001384 ORTHO05D001215 1.6e-10 69.3 37 94.6
Gohir.A11G210500 Gossypium hirsutum HOM05D001384 ORTHO05D001215 2.1e-10 68.9 38 92.1
QL04p058637 Quercus lobata HOM05D001384 ORTHO05D001215 2.1e-10 68.9 36 91.7
CSS0003232 Camellia sinensis var. sinensis HOM05D001384 ORTHO05D001215 2.8e-10 68.6 39 92.3
CAN.G986.43 Capsicum annuum HOM05D001384 ORTHO05D001215 2.8e-10 68.6 38 89.5
Nitab4.5_0008261g0010 Nicotiana tabacum HOM05D001384 ORTHO05D001215 2.8e-10 68.6 37 86.5
QL04p059433 Quercus lobata HOM05D001384 ORTHO05D001215 2.8e-10 68.6 87 62.1
Nitab4.5_0000522g0080 Nicotiana tabacum HOM05D001384 ORTHO05D001215 3.6e-10 68.2 37 86.5
Rhsim07G0006800 Rhododendron simsii HOM05D001384 ORTHO05D001215 3.6e-10 68.2 37 91.9
Sed0020989 Sechium edule HOM05D001384 ORTHO05D001215 3.6e-10 68.2 37 91.9
CiPaw.01G072100 Carya illinoinensis HOM05D001384 ORTHO05D001215 4.7e-10 67.8 80 55.0
Peaxi162Scf01012g00121 Petunia axillaris HOM05D001384 ORTHO05D001215 4.7e-10 67.8 38 84.2
AL4G45630 Arabidopsis lyrata HOM05D001384 ORTHO05D001215 6.1e-10 67.4 39 89.7
AT2G46330 Arabidopsis thaliana HOM05D001384 ORTHO05D001215 6.1e-10 67.4 39 89.7
BcaB01g03229 Brassica carinata HOM05D001384 ORTHO05D001215 6.1e-10 67.4 39 89.7
BcaC01g05082 Brassica carinata HOM05D001384 ORTHO05D001215 6.1e-10 67.4 39 89.7
A03p25570 Brassica napus HOM05D001384 ORTHO05D001215 6.1e-10 67.4 39 89.7
BraA03t11773Z Brassica rapa HOM05D001384 ORTHO05D001215 6.1e-10 67.4 39 89.7
Carub.0004s2903 Capsella rubella HOM05D001384 ORTHO05D001215 6.1e-10 67.4 39 89.7
Thhalv10001752m.g Eutrema salsugineum HOM05D001384 ORTHO05D001215 6.1e-10 67.4 39 89.7
Lalb_Chr04g0261751 Lupinus albus HOM05D001384 ORTHO05D001215 8.0e-10 67.0 36 91.7
Sp4g28370 Schrenkiella parvula HOM05D001384 ORTHO05D001215 8.0e-10 67.0 39 89.7
PGSC0003DMG400019380 Solanum tuberosum HOM05D001384 ORTHO05D001215 8.0e-10 67.0 36 86.1
AT3G61640 Arabidopsis thaliana HOM05D001384 ORTHO05D001215 1.0e-09 66.6 40 87.5
Atru.chr5.621 Acer truncatum HOM05D001384 ORTHO05D001215 1.4e-09 66.2 80 55.0
C03p30500 Brassica napus HOM05D001384 ORTHO05D001215 1.4e-09 66.2 39 87.2
CDE02G0411 Ceratophyllum demersum HOM05D001384 ORTHO05D001215 1.4e-09 66.2 38 84.2
MELO3C006062.2 Cucumis melo HOM05D001384 ORTHO05D001215 1.4e-09 66.2 36 91.7
THA.LOC104802055 Tarenaya hassleriana HOM05D001384 ORTHO05D001215 1.4e-09 66.2 38 86.8
Aa31LG1G27700 Aethionema arabicum HOM05D001384 ORTHO05D001215 1.8e-09 65.9 39 87.2
BcaB01g03227 Brassica carinata HOM05D001384 ORTHO05D001215 1.8e-09 65.9 39 87.2
BcaC01g05077 Brassica carinata HOM05D001384 ORTHO05D001215 1.8e-09 65.9 39 87.2
Ciclev10023364m.g Citrus clementina HOM05D001384 ORTHO05D001215 1.8e-09 65.9 39 87.2
Zm00001eb359480 Zea mays HOM05D001384 ORTHO05D001215 1.8e-09 65.9 33 97.0
arahy.Tifrunner.gnm1.ann1.1BHK1H Arachis hypogaea HOM05D001384 ORTHO05D001215 2.3e-09 65.5 35 91.4
arahy.Tifrunner.gnm1.ann1.246EX0 Arachis hypogaea HOM05D001384 ORTHO05D001215 2.3e-09 65.5 35 88.6
arahy.Tifrunner.gnm1.ann1.57RBBI Arachis hypogaea HOM05D001384 ORTHO05D001215 2.3e-09 65.5 35 88.6
Manes.01G249100 Manihot esculenta HOM05D001384 ORTHO05D001215 2.3e-09 65.5 38 92.1
HPP92_026774 Vanilla planifolia HOM05D001384 ORTHO05D001215 2.3e-09 65.5 39 87.2
Peaxi162Scf00099g01816 Petunia axillaris HOM05D001384 ORTHO05D001215 3.0e-09 65.1 37 83.8
PGR031G3192 Punica granatum HOM05D001384 ORTHO05D001215 3.0e-09 65.1 37 89.2
Sp5g01770 Schrenkiella parvula HOM05D001384 ORTHO05D001215 3.0e-09 65.1 34 91.2
MBI07_g20448_MAGBIO Magnolia biondii HOM05D001384 ORTHO05D001215 4.0e-09 64.7 37 86.5
Os05g0217000 Oryza sativa ssp. japonica HOM05D001384 ORTHO05D001215 4.0e-09 64.7 39 84.6
BcaB01g03224 Brassica carinata HOM05D001384 ORTHO05D001215 5.2e-09 64.3 39 87.2
BcaC02g12698 Brassica carinata HOM05D001384 ORTHO05D001215 5.2e-09 64.3 39 87.2
BcaC02g12816 Brassica carinata HOM05D001384 ORTHO05D001215 5.2e-09 64.3 39 87.2
A04p00990 Brassica napus HOM05D001384 ORTHO05D001215 5.2e-09 64.3 34 88.2
A05p01460 Brassica napus HOM05D001384 ORTHO05D001215 5.2e-09 64.3 39 87.2
C04p01650 Brassica napus HOM05D001384 ORTHO05D001215 5.2e-09 64.3 39 87.2
C04p31180 Brassica napus HOM05D001384 ORTHO05D001215 5.2e-09 64.3 34 88.2
BolC4t21817H Brassica oleracea HOM05D001384 ORTHO05D001215 5.2e-09 64.3 39 87.2
BolC4t24669H Brassica oleracea HOM05D001384 ORTHO05D001215 5.2e-09 64.3 34 88.2
BraA04t15816Z Brassica rapa HOM05D001384 ORTHO05D001215 5.2e-09 64.3 34 88.2
BraA05t19143Z Brassica rapa HOM05D001384 ORTHO05D001215 5.2e-09 64.3 39 87.2
CARHR141610 Cardamine hirsuta HOM05D001384 ORTHO05D001215 5.2e-09 64.3 39 87.2
CDE09G1367 Ceratophyllum demersum HOM05D001384 ORTHO05D001215 5.2e-09 64.3 37 83.8
DCAR_006964 Daucus carota HOM05D001384 ORTHO05D001215 5.2e-09 64.3 38 84.2
vmacro13148 Vaccinium macrocarpon HOM05D001384 ORTHO05D001215 5.2e-09 64.3 37 86.5
arahy.Tifrunner.gnm1.ann1.JZQU6N Arachis hypogaea HOM05D001384 ORTHO05D001215 6.8e-09 63.9 35 88.6
arahy.Tifrunner.gnm1.ann1.XBFI6K Arachis hypogaea HOM05D001384 ORTHO05D001215 6.8e-09 63.9 35 88.6
Aqoxy5G04117 Aquilegia oxysepala HOM05D001384 ORTHO05D001215 8.9e-09 63.5 38 89.5
BcaB02g08150 Brassica carinata HOM05D001384 ORTHO05D001215 8.9e-09 63.5 36 86.1
Glyma.03G255700 Glycine max HOM05D001384 ORTHO05D001215 8.9e-09 63.5 34 88.2
HanXRQChr04g0121001 Helianthus annuus HOM05D001384 ORTHO05D001215 8.9e-09 63.5 38 78.9
Os01g0657000 Oryza sativa ssp. japonica HOM05D001384 ORTHO05D001215 8.9e-09 63.5 39 84.6
Carub.0005s2833 Capsella rubella HOM05D001384 ORTHO05D001215 1.5e-08 62.8 33 90.9
Zm00001eb350580 Zea mays HOM05D001384 ORTHO05D001215 1.5e-08 62.8 39 82.1
CSS0021424 Camellia sinensis var. sinensis HOM05D001384 ORTHO05D001215 2.0e-08 62.4 37 86.5
SMO143G0078 Selaginella moellendorffii HOM05D001384 ORTHO05D001215 2.0e-08 62.4 36 83.3
BcaC02g10241 Brassica carinata HOM05D001384 ORTHO05D001215 2.6e-08 62.0 34 85.3
Os02g0264800 Oryza sativa ssp. japonica HOM05D001384 ORTHO05D001215 2.6e-08 62.0 38 86.8
Zm00001eb237880 Zea mays HOM05D001384 ORTHO05D001215 2.6e-08 62.0 38 86.8
CANSAT56G0949 Cannabis sativa HOM05D001384 ORTHO05D001215 3.4e-08 61.6 35 88.6
AL5G44040 Arabidopsis lyrata HOM05D001384 ORTHO05D001215 5.7e-08 60.8 33 87.9
CDE08G0321 Ceratophyllum demersum HOM05D001384 ORTHO05D001215 5.7e-08 60.8 38 84.2
SEGI_03889 Sequoiadendron giganteum HOM05D001384 ORTHO05D001215 5.7e-08 60.8 37 78.4
SEGI_03997 Sequoiadendron giganteum HOM05D001384 ORTHO05D001215 5.7e-08 60.8 37 78.4
Os06g0505700 Oryza sativa ssp. japonica HOM05D001384 ORTHO05D001215 7.5e-08 60.5 38 84.2
PGR042G2194 Punica granatum HOM05D001384 ORTHO05D001215 7.5e-08 60.5 33 90.9
CDE02G4026 Ceratophyllum demersum HOM05D001384 ORTHO05D001215 1.3e-07 59.7 38 81.6
unitig_62.g23800 Utricularia gibba HOM05D001384 ORTHO05D001215 1.3e-07 59.7 38 73.7
MBI06_g32761_MAGBIO Magnolia biondii HOM05D001384 ORTHO05D001215 2.8e-07 58.5 38 81.6
Zm00001eb203920 Zea mays HOM05D001384 ORTHO05D001215 2.8e-07 58.5 37 83.8
ECA236G1259 Erigeron canadensis HOM05D001384 ORTHO05D001215 3.7e-07 58.2 38 73.7
GSVIVG01028741001 Vitis vinifera HOM05D001384 ORTHO05D001215 3.7e-07 58.2 31 93.5
Potri.001G094700 Populus trichocarpa HOM05D001384 ORTHO05D001215 4.9e-07 57.8 32 90.6
Lj1g0002747 Lotus japonicus HOM05D001384 ORTHO05D001215 6.3e-07 57.4 34 82.4
Actinidia27339 Actinidia chinensis HOM05D001384 ORTHO05D001215 1.1e-06 56.6 30 93.3
AagrBONN_evm.TU.Sc2ySwM_117.409 Anthoceros agrestis HOM05D001384 ORTHO05D001215 1.1e-06 56.6 36 72.2
QL02p057492 Quercus lobata HOM05D001384 ORTHO05D001215 1.1e-06 56.6 32 87.5
Duzib068G0580 Durio zibethinus HOM05D001384 ORTHO05D001215 1.4e-06 56.2 30 93.3
Duzib084G1120 Durio zibethinus HOM05D001384 ORTHO05D001215 1.4e-06 56.2 30 93.3
Duzib205G1079 Durio zibethinus HOM05D001384 ORTHO05D001215 1.4e-06 56.2 30 93.3
Gohir.A12G234600 Gossypium hirsutum HOM05D001384 ORTHO05D001215 1.4e-06 56.2 30 93.3
Gorai.008G252400 Gossypium raimondii HOM05D001384 ORTHO05D001215 1.4e-06 56.2 30 93.3
Manes.02G013300 Manihot esculenta HOM05D001384 ORTHO05D001215 1.4e-06 56.2 30 93.3
Thecc.03G292300 Theobroma cacao HOM05D001384 ORTHO05D001215 1.4e-06 56.2 30 93.3
QL02p031550 Quercus lobata HOM05D001384 ORTHO05D001215 1.8e-06 55.8 32 87.5
TWI15G0052 Tripterygium wilfordii HOM05D001384 ORTHO05D001215 1.8e-06 55.8 30 90.0
unitig_736.g22817 Utricularia gibba HOM05D001384 ORTHO05D001215 1.8e-06 55.8 38 71.1
CDE03G0448 Ceratophyllum demersum HOM05D001384 ORTHO05D001215 2.4e-06 55.5 33 81.8
ClCG07G014860 Citrullus lanatus HOM05D001384 ORTHO05D001215 2.4e-06 55.5 33 81.8
MELO3C032818.2 Cucumis melo HOM05D001384 ORTHO05D001215 2.4e-06 55.5 33 81.8
Phvul.006G110400 Phaseolus vulgaris HOM05D001384 ORTHO05D001215 2.4e-06 55.5 29 93.1
Potri.003G136600 Populus trichocarpa HOM05D001384 ORTHO05D001215 2.4e-06 55.5 32 84.4
Lsat_1_v5_gn_7_1901 Lactuca sativa HOM05D001384 ORTHO05D001215 3.1e-06 55.1 31 83.9
unitig_899.g14812 Utricularia gibba HOM05D001384 ORTHO05D001215 3.1e-06 55.1 38 73.7
CiPaw.11G124600 Carya illinoinensis HOM05D001384 ORTHO05D001215 4.1e-06 54.7 30 90.0
Gohir.D12G235700 Gossypium hirsutum HOM05D001384 ORTHO05D001215 4.1e-06 54.7 30 90.0
Lsat_1_v5_gn_6_11901 Lactuca sativa HOM05D001384 ORTHO05D001215 4.1e-06 54.7 31 83.9
Lj4g0006841 Lotus japonicus HOM05D001384 ORTHO05D001215 4.1e-06 54.7 33 75.8
Sed0009789 Sechium edule HOM05D001384 ORTHO05D001215 4.1e-06 54.7 33 78.8
Ca_17497_v3 Cicer arietinum L. HOM05D001384 ORTHO05D001215 5.4e-06 54.3 33 75.8
Ciclev10023159m.g Citrus clementina HOM05D001384 ORTHO05D001215 5.4e-06 54.3 30 90.0
Medtr8g099245 Medicago truncatula HOM05D001384 ORTHO05D001215 5.4e-06 54.3 33 75.8
ClCG01G002070 Citrullus lanatus HOM05D001384 ORTHO05D001215 7.0e-06 53.9 31 83.9
TWI81G0992 Tripterygium wilfordii HOM05D001384 ORTHO05D001215 7.0e-06 53.9 30 90.0
arahy.Tifrunner.gnm1.ann1.T3QZI5 Arachis hypogaea HOM05D001384 ORTHO05D001215 9.2e-06 53.5 33 75.8
arahy.Tifrunner.gnm1.ann1.Y9NP63 Arachis hypogaea HOM05D001384 ORTHO05D001215 9.2e-06 53.5 33 75.8
COL.COLO4_21727 Corchorus olitorius HOM05D001384 ORTHO05D001215 9.2e-06 53.5 29 89.7
CsaV3_4G006390 Cucumis sativus L. HOM05D001384 ORTHO05D001215 9.2e-06 53.5 30 86.7
Migut.E01230 Erythranthe guttata HOM05D001384 ORTHO05D001215 9.2e-06 53.5 33 78.8


User provided reference genes

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