Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G3704 Fragaria x ananassa HOM05D004539 ORTHO05D005482 7.7e-182 640.6 377 100.0
FvH4_7g07450 Fragaria vesca HOM05D004539 ORTHO05D005482 2.8e-155 552.4 388 86.9
FAN20G1687 Fragaria x ananassa HOM05D004539 ORTHO05D005482 2.3e-138 496.1 380 82.1
FAN27G2077 Fragaria x ananassa HOM05D004539 ORTHO05D005482 1.3e-136 490.3 380 81.8
FAN15G3183 Fragaria x ananassa HOM05D004539 ORTHO05D005482 4.9e-136 488.4 380 81.3
FvH4_2g39030 Fragaria vesca HOM05D004539 ORTHO05D005482 1.4e-135 486.9 380 79.5
RcHm_v2.0_Chr6g0302141 Rosa chinensis HOM05D004539 ORTHO05D005482 2.7e-126 456.1 384 74.0
FAN06G2453 Fragaria x ananassa HOM05D004539 ORTHO05D005482 4.2e-111 405.6 245 96.7
FAN01G2597 Fragaria x ananassa HOM05D004539 ORTHO05D005482 2.5e-87 326.6 200 93.0
FAN22G0834 Fragaria x ananassa HOM05D004539 ORTHO05D005482 3.2e-87 326.2 242 75.6
Prupe.1G370700 Prunus persica HOM05D004539 ORTHO05D005482 9.0e-82 308.1 398 49.7
MD15G1017400 Malus domestica HOM05D004539 ORTHO05D005482 1.0e-77 294.7 398 55.0
MD08G1018100 Malus domestica HOM05D004539 ORTHO05D005482 1.1e-74 284.6 402 54.0
Potri.005G234800 Populus trichocarpa HOM05D004539 ORTHO05D005482 1.7e-67 260.8 402 50.5
CANSAT54G2989 Cannabis sativa HOM05D004539 ORTHO05D005482 3.8e-64 249.6 408 45.8
CiPaw.08G062700 Carya illinoinensis HOM05D004539 ORTHO05D005482 5.0e-64 249.2 404 48.0
Manes.05G152500 Manihot esculenta HOM05D004539 ORTHO05D005482 6.5e-64 248.8 397 46.3
Sabra05G0181000 Salix brachista HOM05D004539 ORTHO05D005482 1.1e-63 248.1 402 48.3
Atru.chr13.359 Acer truncatum HOM05D004539 ORTHO05D005482 2.5e-63 246.9 406 47.0
Phvul.003G186400 Phaseolus vulgaris HOM05D004539 ORTHO05D005482 5.5e-63 245.7 408 47.5
Duzib192G0399 Durio zibethinus HOM05D004539 ORTHO05D005482 9.4e-63 245.0 393 43.8
Glyma.17G076700 Glycine max HOM05D004539 ORTHO05D005482 1.4e-61 241.1 415 48.0
Thecc.04G277100 Theobroma cacao HOM05D004539 ORTHO05D005482 1.8e-61 240.7 394 47.7
COL.COLO4_38586 Corchorus olitorius HOM05D004539 ORTHO05D005482 3.0e-61 240.0 392 41.8
COL.COLO4_16338 Corchorus olitorius HOM05D004539 ORTHO05D005482 4.0e-61 239.6 391 43.2
DCAR_013849 Daucus carota HOM05D004539 ORTHO05D005482 2.0e-60 237.3 399 45.1
Ciclev10004791m.g Citrus clementina HOM05D004539 ORTHO05D005482 2.6e-60 236.9 388 49.2
Psat7g263720 Pisum sativum HOM05D004539 ORTHO05D005482 3.3e-60 236.5 418 46.9
Lalb_Chr03g0033831 Lupinus albus HOM05D004539 ORTHO05D005482 5.7e-60 235.7 385 42.6
PGR031G2058 Punica granatum HOM05D004539 ORTHO05D005482 7.5e-60 235.3 394 44.2
Actinidia29798 Actinidia chinensis HOM05D004539 ORTHO05D005482 1.7e-59 234.2 408 43.6
Gorai.001G253500 Gossypium raimondii HOM05D004539 ORTHO05D005482 2.2e-59 233.8 390 42.1
TAR629G0090 Trochodendron aralioides HOM05D004539 ORTHO05D005482 2.8e-59 233.4 407 43.2
Ciclev10011488m.g Citrus clementina HOM05D004539 ORTHO05D005482 3.7e-59 233.0 391 49.9
Sabra02G0022100 Salix brachista HOM05D004539 ORTHO05D005482 3.7e-59 233.0 404 45.8
Gohir.D07G219000 Gossypium hirsutum HOM05D004539 ORTHO05D005482 4.8e-59 232.6 390 41.8
Rhsim06G0026400 Rhododendron simsii HOM05D004539 ORTHO05D005482 6.3e-59 232.3 414 46.4
Lj1g0010849 Lotus japonicus HOM05D004539 ORTHO05D005482 1.4e-58 231.1 413 43.1
arahy.Tifrunner.gnm1.ann1.D3BLAG Arachis hypogaea HOM05D004539 ORTHO05D005482 1.8e-58 230.7 415 45.8
Glyma.05G023000 Glycine max HOM05D004539 ORTHO05D005482 2.4e-58 230.3 414 44.0
Gohir.A07G212900 Gossypium hirsutum HOM05D004539 ORTHO05D005482 2.0e-57 227.3 390 41.5
Sed0008828 Sechium edule HOM05D004539 ORTHO05D005482 3.5e-57 226.5 401 45.9
TWI60G0405 Tripterygium wilfordii HOM05D004539 ORTHO05D005482 5.9e-57 225.7 405 44.0
Cfa013903 Carpinus fangiana HOM05D004539 ORTHO05D005482 7.7e-57 225.3 405 45.2
Haze_22584 Corylus avellana HOM05D004539 ORTHO05D005482 1.0e-56 224.9 391 47.8
Cpa.g.sc147.12 Carica papaya HOM05D004539 ORTHO05D005482 1.7e-56 224.2 406 40.6
VMungo1215G0403 Vigna mungo HOM05D004539 ORTHO05D005482 1.9e-55 220.7 410 45.4
TPR.G5561 Trifolium pratense HOM05D004539 ORTHO05D005482 5.5e-55 219.2 413 45.3
Medtr4g022890 Medicago truncatula HOM05D004539 ORTHO05D005482 7.2e-55 218.8 411 48.7
TAR628G0025 Trochodendron aralioides HOM05D004539 ORTHO05D005482 2.1e-54 217.2 394 41.6
GSVIVG01009825001 Vitis vinifera HOM05D004539 ORTHO05D005482 6.1e-54 215.7 400 42.5
vmacro21700 Vaccinium macrocarpon HOM05D004539 ORTHO05D005482 1.4e-53 214.5 406 45.1
Ca_11952_v3 Cicer arietinum L. HOM05D004539 ORTHO05D005482 4.0e-53 213.0 412 45.1
Dinv31810 Davidia involucrata HOM05D004539 ORTHO05D005482 4.0e-53 213.0 400 40.2
Hund26867 Selenicereus undatus HOM05D004539 ORTHO05D005482 4.0e-53 213.0 393 39.9
Dinv39486 Davidia involucrata HOM05D004539 ORTHO05D005482 5.2e-53 212.6 389 42.9
Sed0017053 Sechium edule HOM05D004539 ORTHO05D005482 5.2e-53 212.6 404 43.3
Nn6g32243 Nelumbo nucifera HOM05D004539 ORTHO05D005482 2.0e-52 210.7 418 38.5
Sc02g0002900 Simmondsia chinensis HOM05D004539 ORTHO05D005482 4.4e-52 209.5 396 44.9
Thhalv10010315m.g Eutrema salsugineum HOM05D004539 ORTHO05D005482 5.7e-52 209.1 385 44.2
Migut.C00791 Erythranthe guttata HOM05D004539 ORTHO05D005482 1.7e-51 207.6 382 41.9
Lj4A486G10 Lonicera japonica HOM05D004539 ORTHO05D005482 2.2e-51 207.2 457 39.4
Hund17219 Selenicereus undatus HOM05D004539 ORTHO05D005482 2.2e-51 207.2 407 40.3
CsaV3_3G001200 Cucumis sativus L. HOM05D004539 ORTHO05D005482 2.8e-51 206.8 401 45.1
Hma1.2p1_0773F.1_g216150 Hydrangea macrophylla HOM05D004539 ORTHO05D005482 3.7e-51 206.5 404 42.8
MELO3C013810.2 Cucumis melo HOM05D004539 ORTHO05D005482 4.8e-51 206.1 396 45.7
SGA_v2.0_scaffold92G28288 Striga asiatica HOM05D004539 ORTHO05D005482 1.8e-50 204.1 388 39.2
THA.LOC104813189 Tarenaya hassleriana HOM05D004539 ORTHO05D005482 1.8e-50 204.1 398 43.0
Ca_22519_v3 Cicer arietinum L. HOM05D004539 ORTHO05D005482 3.1e-50 203.4 409 44.7
Lj2g0012026 Lotus japonicus HOM05D004539 ORTHO05D005482 9.1e-50 201.8 417 42.9
SGA_v2.0_scaffold4G01895 Striga asiatica HOM05D004539 ORTHO05D005482 9.1e-50 201.8 387 38.2
arahy.Tifrunner.gnm1.ann1.ME0SR7 Arachis hypogaea HOM05D004539 ORTHO05D005482 2.7e-49 200.3 377 42.4
ATR0691G247 Amborella trichopoda HOM05D004539 ORTHO05D005482 1.3e-48 198.0 406 38.2
FAN05G0730 Fragaria x ananassa HOM05D000664 ORTHO05D000491 2.9e-48 196.8 199 64.3
Lj4C484T3 Lonicera japonica HOM05D004539 ORTHO05D005482 3.8e-48 196.4 362 41.7
EL10Ac1g00555 Beta vulgaris HOM05D004539 ORTHO05D005482 6.5e-48 195.7 379 46.2
ECA232G1826 Erigeron canadensis HOM05D004539 ORTHO05D005482 6.5e-48 195.7 389 42.2
SalBow6G1219 Salvia bowleyana HOM05D004539 ORTHO05D005482 5.5e-47 192.6 388 39.9
Aa31LG4G18400 Aethionema arabicum HOM05D004539 ORTHO05D005482 9.5e-47 191.8 384 45.1
AL5G30050 Arabidopsis lyrata HOM05D004539 ORTHO05D005482 9.5e-47 191.8 386 38.9
AT3G49990 Arabidopsis thaliana HOM05D004539 ORTHO05D005482 9.5e-47 191.8 390 41.8
AUR62034567 Chenopodium quinoa HOM05D004539 ORTHO05D005482 9.5e-47 191.8 374 45.2
Carub.0005s1635 Capsella rubella HOM05D004539 ORTHO05D005482 1.2e-46 191.4 377 44.0
Sp5g12110 Schrenkiella parvula HOM05D004539 ORTHO05D005482 1.2e-46 191.4 385 43.6
Cpa.g.sc140.19 Carica papaya HOM05D004539 ORTHO05D005482 3.6e-46 189.9 404 41.3
AUR62042221 Chenopodium quinoa HOM05D004539 ORTHO05D005482 3.6e-46 189.9 374 45.2
AUR62014430 Chenopodium quinoa HOM05D004539 ORTHO05D005482 3.0e-45 186.8 374 44.9
Lsat_1_v5_gn_4_116341 Lactuca sativa HOM05D004539 ORTHO05D005482 3.0e-45 186.8 397 37.3
HPP92_016110 Vanilla planifolia HOM05D004539 ORTHO05D005482 6.8e-45 185.7 388 38.1
Cc10_g02110 Coffea canephora HOM05D004539 ORTHO05D005482 8.8e-45 185.3 402 39.3
ClCG05G018590 Citrullus lanatus HOM05D004539 ORTHO05D005482 1.2e-44 184.9 472 37.9
MSTRG.25219 Avicennia marina HOM05D004539 ORTHO05D005482 1.5e-44 184.5 385 39.0
BolC7t45082H Brassica oleracea HOM05D004539 ORTHO05D005482 3.4e-44 183.3 379 42.0
Nitab4.5_0012730g0010 Nicotiana tabacum HOM05D004539 ORTHO05D005482 3.4e-44 183.3 395 43.3
PSO675G8916 Papaver somniferum HOM05D004539 ORTHO05D005482 3.4e-44 183.3 412 41.0
CAN.G851.13 Capsicum annuum HOM05D004539 ORTHO05D005482 1.7e-43 181.0 395 43.0
PSO541G3108 Papaver somniferum HOM05D004539 ORTHO05D005482 1.7e-43 181.0 415 41.0
A03p47640 Brassica napus HOM05D004539 ORTHO05D005482 6.3e-43 179.1 376 42.6
BraA03t13876Z Brassica rapa HOM05D004539 ORTHO05D005482 1.1e-42 178.3 379 42.7
Ah.02g124950 Amaranthus hybridus HOM05D004539 ORTHO05D005482 1.4e-42 177.9 348 45.1
Oeu036929.3 Olea europaea HOM05D004539 ORTHO05D005482 7.0e-42 175.6 428 35.7
Oeu030391.1 Olea europaea HOM05D004539 ORTHO05D005482 1.2e-41 174.9 398 39.4
BcaC06g33276 Brassica carinata HOM05D004539 ORTHO05D005482 7.8e-41 172.2 387 41.1
C07p45610 Brassica napus HOM05D004539 ORTHO05D005482 7.8e-41 172.2 387 41.1
CARHR159060 Cardamine hirsuta HOM05D004539 ORTHO05D005482 2.3e-40 170.6 394 41.9
CDE12G0120 Ceratophyllum demersum HOM05D004539 ORTHO05D005482 2.3e-40 170.6 424 36.8
BcaC06g33116 Brassica carinata HOM05D004539 ORTHO05D005482 3.8e-40 169.9 388 41.5
Solyc04g081030.3 Solanum lycopersicum HOM05D004539 ORTHO05D005482 3.8e-40 169.9 318 39.9
unitig_578.g16661 Utricularia gibba HOM05D004539 ORTHO05D005482 5.6e-39 166.0 375 36.5
Sopen04g034650 Solanum pennellii HOM05D004539 ORTHO05D005482 2.3e-37 160.6 320 38.4
Os03g0372700 Oryza sativa ssp. japonica HOM05D004539 ORTHO05D005482 5.7e-36 156.0 391 43.0
Aqoxy7G01402 Aquilegia oxysepala HOM05D004539 ORTHO05D005482 1.3e-35 154.8 356 38.2
CAN.G851.15 Capsicum annuum HOM05D004539 ORTHO05D005482 1.7e-35 154.5 309 38.8
Peaxi162Scf00287g00122 Petunia axillaris HOM05D004539 ORTHO05D005482 1.8e-34 151.0 324 37.7
QL02p010735 Quercus lobata HOM05D004539 ORTHO05D005482 2.4e-34 150.6 263 50.6
PGSC0003DMG400003712 Solanum tuberosum HOM05D004539 ORTHO05D005482 3.2e-34 150.2 364 34.3
Zm00001eb018110 Zea mays HOM05D004539 ORTHO05D005482 7.0e-34 149.1 397 38.8
Lj4C792T1 Lonicera japonica HOM05D004539 ORTHO05D005482 8.6e-32 142.1 381 36.7
HanXRQChr09g0269371 Helianthus annuus HOM05D004539 ORTHO05D005482 5.6e-31 139.4 268 41.0
Zm00001eb394100 Zea mays HOM05D004539 ORTHO05D005482 5.6e-31 139.4 394 37.3
Zm00001eb394110 Zea mays HOM05D004539 ORTHO05D005482 5.6e-31 139.4 394 37.3
SEGI_09517 Sequoiadendron giganteum HOM05D004539 ORTHO05D005482 2.0e-28 131.0 429 31.0
SEGI_17236 Sequoiadendron giganteum HOM05D004539 ORTHO05D005482 7.5e-28 129.0 436 29.8
MBI05_g04844_MAGBIO Magnolia biondii HOM05D004539 ORTHO05D005482 1.7e-24 117.9 570 29.5
Pp3c26_3100 Physcomitrium patens HOM05D004539 ORTHO05D005482 5.2e-21 106.3 399 33.3
CDE04G1317 Ceratophyllum demersum HOM05D004539 ORTHO05D009003 5.4e-18 96.3 371 34.0
Mapoly0079s0035 Marchantia polymorpha HOM05D004539 ORTHO05D005482 1.2e-17 95.1 425 30.6
Eucgr.E04075 Eucalyptus grandis HOM05D004539 ORTHO05D005482 3.6e-14 83.6 158 39.9
SMO367G1003 Selaginella moellendorffii HOM05D004539 ORTHO05D005482 4.7e-14 83.2 176 34.7
QL02p010726 Quercus lobata HOM05D004539 ORTHO05D005482 6.2e-14 82.8 151 43.0
Cpa.g.sc1191.1 Carica papaya HOM05D004539 ORTHO05D005482 5.2e-13 79.7 74 63.5
Nitab4.5_0006718g0010 Nicotiana tabacum HOM05D004539 ORTHO05D005482 2.0e-12 77.8 140 44.3
Rhsim06G0016800 Rhododendron simsii HOM05D004539 ORTHO05D005482 7.6e-12 75.9 194 36.1
Potri.002G028100 Populus trichocarpa HOM05D004539 ORTHO05D005482 2.2e-11 74.3 126 41.3
CBR_g23809 Chara braunii HOM05D004539 ORTHO05D005482 4.9e-11 73.2 389 27.5
Rhsim06G0017000 Rhododendron simsii HOM05D004539 ORTHO05D005482 5.4e-10 69.7 149 39.6
BcaB05g23177 Brassica carinata HOM05D004539 ORTHO05D005482 7.1e-10 69.3 121 38.8
AagrBONN_evm.TU.Sc2ySwM_344.1857 Anthoceros agrestis HOM05D004539 ORTHO05D005482 7.8e-09 65.9 347 30.3
TAR628G0156 Trochodendron aralioides HOM05D004539 ORTHO05D005482 6.6e-08 62.8 66 62.1
TAR369G0231 Trochodendron aralioides HOM05D004539 ORTHO05D005482 3.3e-07 60.5 76 47.4


User provided reference genes

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