Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G3700 Fragaria x ananassa HOM05D004727 ORTHO05D005788 2.6e-186 655.2 322 100.0
FAN10G1092 Fragaria x ananassa HOM05D004727 ORTHO05D005788 2.2e-185 652.1 322 99.7
FAN03G1377 Fragaria x ananassa HOM05D004727 ORTHO05D005788 8.0e-180 633.6 322 96.6
FvH4_7g30250 Fragaria vesca HOM05D004727 ORTHO05D005788 2.7e-175 618.6 325 94.8
FAN06G4134 Fragaria x ananassa HOM05D004727 ORTHO05D005788 2.1e-172 609.0 339 90.9
FAN06G0456 Fragaria x ananassa HOM05D004727 ORTHO05D005788 2.8e-172 608.6 339 90.6
RcHm_v2.0_Chr1g0378381 Rosa chinensis HOM05D004727 ORTHO05D005788 1.2e-154 550.1 319 85.0
MD01G1208600 Malus domestica HOM05D004727 ORTHO05D005788 6.0e-135 484.6 325 73.8
Prupe.2G301200 Prunus persica HOM05D004727 ORTHO05D005788 4.3e-133 478.4 321 74.5
Manes.06G152500 Manihot esculenta HOM05D004727 ORTHO05D005788 1.9e-117 426.4 286 70.3
CSS0032352 Camellia sinensis var. sinensis HOM05D004727 ORTHO05D005788 2.4e-115 419.5 313 65.2
Cfa016290 Carpinus fangiana HOM05D002238 ORTHO05D007272 5.3e-115 418.3 315 66.0
Potri.017G146200 Populus trichocarpa HOM05D004727 ORTHO05D005788 9.0e-115 417.5 315 65.4
vmacro09814 Vaccinium macrocarpon HOM05D004727 ORTHO05D005788 3.4e-114 415.6 324 62.3
GSVIVG01028857001 Vitis vinifera HOM05D004727 ORTHO05D005788 3.8e-113 412.1 320 64.1
Rhsim09G0200700 Rhododendron simsii HOM05D004727 ORTHO05D005788 2.5e-112 409.5 371 56.6
Atru.chr1.354 Acer truncatum HOM05D004727 ORTHO05D005788 9.4e-112 407.5 286 67.5
Duzib205G1763 Durio zibethinus HOM05D004727 ORTHO05D005788 1.6e-111 406.8 312 64.1
Actinidia03138 Actinidia chinensis HOM05D004727 ORTHO05D005788 2.1e-111 406.4 292 67.8
Potri.004G073700 Populus trichocarpa HOM05D004727 ORTHO05D005788 4.6e-111 405.2 315 63.5
Eucgr.A02736 Eucalyptus grandis HOM05D004727 ORTHO05D005788 5.1e-110 401.7 285 66.0
Ca_23692_v3 Cicer arietinum L. HOM05D004727 ORTHO05D005788 3.3e-109 399.1 314 61.8
Haze_00047 Corylus avellana HOM05D004727 ORTHO05D005788 4.3e-109 398.7 345 59.7
MSTRG.8711 Avicennia marina HOM05D004727 ORTHO05D005788 9.7e-109 397.5 315 60.6
Medtr0057s0080 Medicago truncatula HOM05D004727 ORTHO05D005788 2.8e-108 396.0 316 61.7
Gohir.D08G109400 Gossypium hirsutum HOM05D004727 ORTHO05D005788 3.1e-107 392.5 287 66.2
Thecc.03G184500 Theobroma cacao HOM05D004727 ORTHO05D005788 3.1e-107 392.5 313 61.3
TPR.G33517 Trifolium pratense HOM05D004727 ORTHO05D005788 6.9e-107 391.3 316 60.8
CANSAT21G0167 Cannabis sativa HOM05D004727 ORTHO05D005788 9.1e-107 391.0 313 64.5
CANSAT21G2173 Cannabis sativa HOM05D004727 ORTHO05D005788 9.1e-107 391.0 313 64.5
Psat0ss29864g0280 Pisum sativum HOM05D004727 ORTHO05D005788 9.1e-107 391.0 316 61.4
COL.COLO4_30213 Corchorus olitorius HOM05D004727 ORTHO05D005788 1.5e-106 390.2 284 65.8
VMungo0464G1912 Vigna mungo HOM05D004727 ORTHO05D005788 2.0e-106 389.8 319 60.8
Nn1g01641 Nelumbo nucifera HOM05D004727 ORTHO05D005788 3.4e-106 389.0 316 62.7
Phvul.004G107900 Phaseolus vulgaris HOM05D004727 ORTHO05D005788 3.4e-106 389.0 319 60.8
Oeu061663.1 Olea europaea HOM05D004727 ORTHO05D005788 4.5e-106 388.7 306 63.7
Gohir.D11G011600 Gossypium hirsutum HOM05D004727 ORTHO05D005788 7.7e-106 387.9 280 64.6
Gorai.007G013000 Gossypium raimondii HOM05D004727 ORTHO05D005788 7.7e-106 387.9 280 64.6
Gohir.A08G085600 Gossypium hirsutum HOM05D004727 ORTHO05D005788 1.0e-105 387.5 267 68.2
Lsat_1_v5_gn_9_56621 Lactuca sativa HOM05D004727 ORTHO05D005788 1.0e-105 387.5 303 63.4
Aqoxy7G00234 Aquilegia oxysepala HOM05D004727 ORTHO05D005788 1.7e-105 386.7 285 67.0
Sabra04G0048400 Salix brachista HOM05D004727 ORTHO05D005788 1.7e-105 386.7 320 62.2
Cc02_g02360 Coffea canephora HOM05D004727 ORTHO05D005788 2.9e-105 386.0 314 60.5
Gohir.A11G012400 Gossypium hirsutum HOM05D004727 ORTHO05D005788 5.0e-105 385.2 320 59.1
Sc25g0000700 Simmondsia chinensis HOM05D004727 ORTHO05D005788 5.0e-105 385.2 272 66.9
Gorai.004G117100 Gossypium raimondii HOM05D004727 ORTHO05D005788 3.2e-104 382.5 280 65.0
PGR042G1629 Punica granatum HOM05D004727 ORTHO05D005788 4.2e-104 382.1 320 59.7
HanXRQChr12g0381081 Helianthus annuus HOM05D004727 ORTHO05D005788 1.2e-103 380.6 295 62.7
CsaV3_3G017470 Cucumis sativus L. HOM05D004727 ORTHO05D005788 7.9e-103 377.9 315 60.3
Manes.06G152600 Manihot esculenta HOM05D004727 ORTHO05D005788 1.4e-102 377.1 302 64.2
Sed0015096 Sechium edule HOM05D004727 ORTHO05D005788 1.4e-102 377.1 315 60.6
Glyma.09G131600 Glycine max HOM05D004727 ORTHO05D005788 2.3e-102 376.3 321 60.4
Lalb_Chr03g0034881 Lupinus albus HOM05D004727 ORTHO05D005788 2.3e-102 376.3 320 59.1
Migut.F00289 Erythranthe guttata HOM05D004727 ORTHO05D005788 3.3e-101 372.5 269 65.8
Glyma.16G178900 Glycine max HOM05D004727 ORTHO05D005788 2.2e-100 369.8 321 59.5
ECA232G4896 Erigeron canadensis HOM05D004727 ORTHO05D005788 4.8e-100 368.6 281 62.3
SalBow4G1885 Salvia bowleyana HOM05D004727 ORTHO05D005788 6.3e-100 368.2 379 52.5
CiPaw.05G262100 Carya illinoinensis HOM05D004727 ORTHO05D005788 8.2e-100 367.9 233 74.7
FAN03G2629 Fragaria x ananassa HOM05D004727 ORTHO05D005788 7.0e-99 364.8 216 84.3
CARHR233170 Cardamine hirsuta HOM05D004727 ORTHO05D005788 1.6e-98 363.6 316 57.6
EL10Ac3g05418 Beta vulgaris HOM05D004727 ORTHO05D005788 2.0e-98 363.2 298 60.4
PSO782G5178 Papaver somniferum HOM05D004727 ORTHO05D005788 2.0e-98 363.2 253 66.4
PSO478G4818 Papaver somniferum HOM05D004727 ORTHO05D005788 2.6e-98 362.8 316 57.3
AL7G27320 Arabidopsis lyrata HOM05D004727 ORTHO05D005788 1.0e-97 360.9 288 62.2
Solyc03g007900.3 Solanum lycopersicum HOM05D004727 ORTHO05D005788 2.9e-97 359.4 326 55.2
BolC1t02052H Brassica oleracea HOM05D004727 ORTHO05D005788 5.0e-97 358.6 309 58.6
Lalb_Chr19g0130641 Lupinus albus HOM05D004727 ORTHO05D005788 5.0e-97 358.6 288 61.5
unitig_0.g2469 Utricularia gibba HOM05D004727 ORTHO05D005788 5.0e-97 358.6 292 59.2
Aa31sc163G30 Aethionema arabicum HOM05D004727 ORTHO05D005788 6.5e-97 358.2 287 60.6
Lj2g0018940 Lotus japonicus HOM05D004727 ORTHO05D005788 8.5e-97 357.8 315 56.5
C01p21250 Brassica napus HOM05D004727 ORTHO05D005788 3.2e-96 355.9 295 59.0
CDE11G0547 Ceratophyllum demersum HOM05D004727 ORTHO05D005788 5.5e-96 355.1 283 64.3
HPP92_025470 Vanilla planifolia HOM05D004727 ORTHO05D005788 5.5e-96 355.1 274 61.7
ATR0661G169 Amborella trichopoda HOM05D004727 ORTHO05D005788 1.2e-95 354.0 300 60.0
A01p16970 Brassica napus HOM05D004727 ORTHO05D005788 1.6e-95 353.6 307 58.3
BraA01t01653Z Brassica rapa HOM05D004727 ORTHO05D005788 2.1e-95 353.2 307 58.3
ClCG05G008410 Citrullus lanatus HOM05D004727 ORTHO05D005788 2.1e-95 353.2 352 54.5
Sopen03g003850 Solanum pennellii HOM05D004727 ORTHO05D005788 2.1e-95 353.2 320 55.9
CAN.G126.29 Capsicum annuum HOM05D004727 ORTHO05D005788 4.7e-95 352.1 323 56.0
Duzib068G1006 Durio zibethinus HOM05D004727 ORTHO05D005788 4.7e-95 352.1 283 62.2
Medtr0057s0130 Medicago truncatula HOM05D004727 ORTHO05D005788 1.0e-94 350.9 277 62.8
Thhalv10025771m.g Eutrema salsugineum HOM05D004727 ORTHO05D005788 1.4e-94 350.5 317 56.8
Hund11719 Selenicereus undatus HOM05D004727 ORTHO05D005788 1.8e-94 350.1 323 57.0
Nitab4.5_0000084g0460 Nicotiana tabacum HOM05D004727 ORTHO05D005788 3.0e-94 349.4 287 62.0
Os06g0103700 Oryza sativa ssp. japonica HOM05D004727 ORTHO05D005788 3.0e-94 349.4 253 64.0
Sp7g23750 Schrenkiella parvula HOM05D004727 ORTHO05D005788 3.0e-94 349.4 319 55.2
Carub.0007s1524 Capsella rubella HOM05D004727 ORTHO05D005788 6.7e-94 348.2 318 56.0
Nitab4.5_0008522g0010 Nicotiana tabacum HOM05D004727 ORTHO05D005788 6.7e-94 348.2 316 55.4
CAN.G126.24 Capsicum annuum HOM05D004727 ORTHO05D005788 1.5e-93 347.1 295 59.3
HanXRQChr05g0130171 Helianthus annuus HOM05D004727 ORTHO05D005788 1.5e-93 347.1 311 56.9
Peaxi162Scf00444g00244 Petunia axillaris HOM05D004727 ORTHO05D005788 5.7e-93 345.1 349 51.0
Hund04788 Selenicereus undatus HOM05D004727 ORTHO05D005788 9.7e-93 344.4 282 59.2
Solyc03g007920.4 Solanum lycopersicum HOM05D004727 ORTHO05D005788 1.3e-92 344.0 287 59.2
unitig_52.g17730 Utricularia gibba HOM05D004727 ORTHO05D005788 1.3e-92 344.0 281 59.4
Nitab4.5_0008522g0030 Nicotiana tabacum HOM05D004727 ORTHO05D005788 1.7e-92 343.6 287 61.0
PGSC0003DMG400009500 Solanum tuberosum HOM05D004727 ORTHO05D005788 2.2e-92 343.2 298 59.1
Glyma.09G131900 Glycine max HOM05D004727 ORTHO05D005788 4.8e-92 342.0 299 58.5
Cpa.g.sc107.111 Carica papaya HOM05D004727 ORTHO05D005788 8.2e-92 341.3 314 55.7
Sopen03g003870 Solanum pennellii HOM05D004727 ORTHO05D005788 1.1e-91 340.9 287 58.9
Phvul.004G108600 Phaseolus vulgaris HOM05D004727 ORTHO05D005788 1.4e-91 340.5 280 58.6
arahy.Tifrunner.gnm1.ann1.G1I5XM Arachis hypogaea HOM05D004727 ORTHO05D005788 2.4e-91 339.7 298 57.7
Glyma.09G131800 Glycine max HOM05D004727 ORTHO05D005788 7.0e-91 338.2 284 60.2
VMungo0464G2071 Vigna mungo HOM05D004727 ORTHO05D005788 9.1e-91 337.8 287 57.1
AUR62021119 Chenopodium quinoa HOM05D004727 ORTHO05D005788 2.7e-90 336.3 322 55.6
Dinv35254 Davidia involucrata HOM05D004727 ORTHO05D005788 5.9e-90 335.1 213 74.2
MELO3C006936.2 Cucumis melo HOM05D004727 ORTHO05D005788 7.7e-90 334.7 314 56.7
Ah.06g181400 Amaranthus hybridus HOM05D004727 ORTHO05D005788 1.0e-89 334.3 282 56.0
Nitab4.5_0000084g0450 Nicotiana tabacum HOM05D004727 ORTHO05D005788 2.2e-89 333.2 365 48.8
AUR62031423 Chenopodium quinoa HOM05D004727 ORTHO05D005788 5.5e-88 328.6 322 53.4
AT4G25720 Arabidopsis thaliana HOM05D004727 ORTHO05D005788 2.3e-86 323.2 289 57.4
SGA_v2.0_scaffold60G21112 Striga asiatica HOM05D004727 ORTHO05D005788 6.8e-86 321.6 323 52.3
Lalb_Chr19g0130651 Lupinus albus HOM05D004727 ORTHO05D005788 5.7e-85 318.5 258 59.7
HPP92_025401 Vanilla planifolia HOM05D004727 ORTHO05D005788 1.4e-83 313.9 226 65.5
SEGI_23205 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 4.2e-80 302.4 247 58.3
arahy.Tifrunner.gnm1.ann1.NE53A1 Arachis hypogaea HOM05D004727 ORTHO05D005788 7.2e-80 301.6 298 54.4
EL10Ac4g07582 Beta vulgaris HOM05D004727 ORTHO05D005788 2.3e-78 296.6 361 45.7
MSTRG.27085 Avicennia marina HOM05D004727 ORTHO05D005788 1.8e-75 287.0 234 59.4
Ciclev10005858m.g Citrus clementina HOM05D004727 ORTHO05D005788 7.7e-74 281.6 196 69.9
Pp3c10_5500 Physcomitrium patens HOM05D004727 ORTHO05D005788 1.9e-72 276.9 297 48.5
FAN01G2810 Fragaria x ananassa HOM05D000427 ORTHO05D000386 4.3e-72 275.8 285 57.9
Mapoly0062s0028 Marchantia polymorpha HOM05D004727 ORTHO05D005788 6.1e-71 271.9 246 52.0
AUR62036451 Chenopodium quinoa HOM05D004727 ORTHO05D005788 6.8e-70 268.5 236 57.2
SMO351G0007 Selaginella moellendorffii HOM05D004727 ORTHO05D005788 6.6e-65 251.9 236 52.5
AUR62017096 Chenopodium quinoa HOM05D004727 ORTHO05D005788 6.2e-63 245.4 211 57.8
CBR_g727 Chara braunii HOM05D004727 ORTHO05D005788 8.0e-63 245.0 252 48.4
CBR_g3311 Chara braunii HOM05D004727 ORTHO05D005788 4.0e-62 242.7 233 50.2
CBR_g3313 Chara braunii HOM05D004727 ORTHO05D005788 4.0e-62 242.7 233 50.2
Zm00001eb268480 Zea mays HOM05D004727 ORTHO05D005788 2.9e-60 236.5 200 60.0
QL09p012782 Quercus lobata HOM05D004727 ORTHO05D005788 6.4e-60 235.3 155 71.6
Actinidia31840 Actinidia chinensis HOM05D004727 ORTHO05D005788 1.7e-57 227.3 140 72.9
Cre11.g476150 Chlamydomonas reinhardtii HOM05D004727 ORTHO05D005788 3.9e-57 226.1 269 42.0
MBI12_g08716_MAGBIO Magnolia biondii HOM05D004727 ORTHO05D005788 6.6e-57 225.3 200 57.0
Peaxi162Scf00444g00021 Petunia axillaris HOM05D004727 ORTHO05D005788 5.6e-56 222.2 213 55.9
Ah.13g069160 Amaranthus hybridus HOM05D004727 ORTHO05D005788 1.5e-53 214.2 161 63.4
DCAR_024607 Daucus carota HOM05D004727 ORTHO05D005788 6.2e-47 192.2 163 60.7
AUR62036407 Chenopodium quinoa HOM05D004727 ORTHO05D005788 4.0e-46 189.5 212 48.6
SMO231G0015 Selaginella moellendorffii HOM05D004727 ORTHO05D005788 7.6e-45 185.3 193 49.7
MCO01G501 Micromonas commoda HOM05D004727 ORTHO05D005788 2.2e-44 183.7 236 39.8
Actinidia31841 Actinidia chinensis HOM05D004727 ORTHO05D005788 2.4e-43 180.3 163 55.8
DCAR_008880 Daucus carota HOM05D001628 ORTHO05D001568 6.0e-42 175.6 157 56.1
arahy.Tifrunner.gnm1.ann1.FZN7A9 Arachis hypogaea HOM05D004727 ORTHO05D005788 4.3e-40 169.5 191 48.2
PRCOL_00002776 Prasinoderma coloniale HOM05D004727 ORTHO05D005788 9.6e-40 168.3 288 38.9
AagrBONN_evm.TU.Sc2ySwM_344.2696 Anthoceros agrestis HOM05D004727 ORTHO05D005788 1.3e-36 157.9 163 50.9
EL10Ac4g07580 Beta vulgaris HOM05D004727 ORTHO05D005788 5.3e-30 136.0 150 48.7
SEGI_30519 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 2.2e-28 130.6 107 57.0
QL09p012777 Quercus lobata HOM05D004727 ORTHO05D005788 3.0e-25 120.2 169 46.2
Ciclev10006767m.g Citrus clementina HOM05D004727 ORTHO05D005788 1.6e-23 114.4 76 73.7
MD14G1086700 Malus domestica HOM05D004727 ORTHO05D005788 3.8e-20 103.2 82 65.9
SHI13754 Sapria himalayana HOM05D004727 ORTHO05D005788 8.4e-20 102.1 98 51.0
ECA233G3504 Erigeron canadensis HOM05D004727 ORTHO05D005788 1.1e-19 101.7 175 37.7
TWI39G0716 Tripterygium wilfordii HOM05D001943 ORTHO05D001969 3.2e-19 100.1 74 60.8
Mapoly1114s0001 Marchantia polymorpha HOM05D004727 ORTHO05D005788 3.5e-18 96.7 87 50.6
SEGI_06548 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 4.3e-16 89.7 71 59.2
Ah.13g069170 Amaranthus hybridus HOM05D004727 ORTHO05D005788 8.4e-12 75.5 119 39.5
Hund04787 Selenicereus undatus HOM05D021542 ORTHO05D383482 8.4e-12 75.5 185 31.9
Medtr4g012780 Medicago truncatula HOM05D004727 ORTHO05D005788 1.6e-10 71.2 36 86.1
DCAR_008881 Daucus carota HOM05D000120 ORTHO05D021885 6.9e-06 55.8 51 56.9


User provided reference genes

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