Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G3685 Fragaria x ananassa HOM05D004671 ORTHO05D005638 5.4e-306 1053.5 539 100.0
FAN10G4176 Fragaria x ananassa HOM05D004671 ORTHO05D005638 2.8e-302 1041.2 539 99.3
FAN03G0738 Fragaria x ananassa HOM05D004671 ORTHO05D005638 4.3e-295 1017.3 541 97.4
FAN01G2609 Fragaria x ananassa HOM05D004671 ORTHO05D005638 4.0e-293 1010.7 539 96.8
FvH4_7g29570 Fragaria vesca HOM05D004671 ORTHO05D005638 1.4e-290 1002.3 539 96.3
FAN06G5094 Fragaria x ananassa HOM05D004671 ORTHO05D005638 1.8e-288 995.3 546 95.1
FAN06G3892 Fragaria x ananassa HOM05D004671 ORTHO05D005638 5.3e-285 983.8 560 92.3
RcHm_v2.0_Chr1g0377571 Rosa chinensis HOM05D004671 ORTHO05D005638 1.0e-251 873.2 548 85.2
RcHm_v2.0_Chr6g0258831 Rosa chinensis HOM05D004671 ORTHO05D005638 2.4e-221 772.3 540 78.1
Prupe.2G295500 Prunus persica HOM05D004671 ORTHO05D005638 1.2e-156 557.4 544 59.0
MD07G1271200 Malus domestica HOM05D004671 ORTHO05D005638 1.5e-154 550.4 540 57.0
MD01G1202100 Malus domestica HOM05D004671 ORTHO05D005638 3.5e-151 539.3 540 55.9
Thecc.03G178300 Theobroma cacao HOM05D004671 ORTHO05D005638 1.6e-148 530.4 545 56.0
CANSAT21G1295 Cannabis sativa HOM05D004671 ORTHO05D005638 1.0e-147 527.7 545 56.1
CANSAT21G1725 Cannabis sativa HOM05D004671 ORTHO05D005638 6.7e-147 525.0 543 55.6
GSVIVG01028933001 Vitis vinifera HOM05D004671 ORTHO05D005638 6.3e-145 518.5 546 53.7
Duzib205G1877 Durio zibethinus HOM05D004671 ORTHO05D005638 8.2e-145 518.1 569 53.6
Dinv24388 Davidia involucrata HOM05D004671 ORTHO05D005638 7.7e-143 511.5 547 52.8
Cpa.g.sc107.62 Carica papaya HOM05D004671 ORTHO05D005638 2.7e-140 503.1 561 50.8
CiPaw.03G107600 Carya illinoinensis HOM05D004671 ORTHO05D005638 3.6e-140 502.7 528 53.2
Gohir.A09G041700 Gossypium hirsutum HOM05D004671 ORTHO05D005638 4.7e-140 502.3 545 53.6
CsaV3_3G017180 Cucumis sativus L. HOM05D004671 ORTHO05D005638 1.4e-139 500.7 547 50.5
TAR629G1771 Trochodendron aralioides HOM05D004671 ORTHO05D005638 2.3e-139 500.0 547 52.5
Cfa002753 Carpinus fangiana HOM05D004671 ORTHO05D005638 6.7e-139 498.4 547 51.7
COL.COLO4_14329 Corchorus olitorius HOM05D004671 ORTHO05D005638 3.3e-138 496.1 544 51.8
Gorai.006G048800 Gossypium raimondii HOM05D004671 ORTHO05D005638 3.3e-138 496.1 545 53.2
Ciclev10004721m.g Citrus clementina HOM05D004671 ORTHO05D005638 7.5e-138 495.0 544 51.8
Eucgr.K00269 Eucalyptus grandis HOM05D004671 ORTHO05D005638 1.3e-137 494.2 540 51.3
Gohir.D09G042500 Gossypium hirsutum HOM05D004671 ORTHO05D005638 2.2e-137 493.4 545 52.8
Manes.14G025200 Manihot esculenta HOM05D004671 ORTHO05D005638 2.2e-137 493.4 547 50.8
ClCG05G008100 Citrullus lanatus HOM05D004671 ORTHO05D005638 3.7e-137 492.7 555 50.8
Atru.chr1.442 Acer truncatum HOM05D004671 ORTHO05D005638 2.7e-135 486.5 543 51.2
Cfa022980 Carpinus fangiana HOM05D004671 ORTHO05D005638 3.2e-133 479.6 544 49.8
vmacro09835 Vaccinium macrocarpon HOM05D004671 ORTHO05D005638 1.4e-128 464.2 573 47.6
Nn3g16880 Nelumbo nucifera HOM05D004671 ORTHO05D005638 2.0e-127 460.3 526 49.4
PGR142G1152 Punica granatum HOM05D004671 ORTHO05D005638 1.9e-125 453.8 547 48.8
DCAR_015049 Daucus carota HOM05D004671 ORTHO05D005638 2.5e-125 453.4 549 47.4
arahy.Tifrunner.gnm1.ann1.V0I5I8 Arachis hypogaea HOM05D004671 ORTHO05D005638 3.3e-125 453.0 557 47.4
DCAR_010301 Daucus carota HOM05D004671 ORTHO05D005638 3.3e-125 453.0 544 47.8
CAN.G208.79 Capsicum annuum HOM05D004671 ORTHO05D005638 3.6e-124 449.5 546 47.3
Phvul.007G071300 Phaseolus vulgaris HOM05D004671 ORTHO05D005638 1.0e-123 448.0 549 47.5
VMungo0720G2100 Vigna mungo HOM05D004671 ORTHO05D005638 2.3e-123 446.8 547 48.1
Lalb_Chr06g0161161 Lupinus albus HOM05D004671 ORTHO05D005638 6.8e-123 445.3 540 49.6
MSTRG.27109 Avicennia marina HOM05D004671 ORTHO05D005638 5.7e-122 442.2 547 47.3
Glyma.20G159500 Glycine max HOM05D004671 ORTHO05D005638 5.7e-122 442.2 550 47.6
Glyma.10G234800 Glycine max HOM05D004671 ORTHO05D005638 9.8e-122 441.4 550 47.1
Haze_25041 Corylus avellana HOM05D004671 ORTHO05D005638 1.3e-121 441.0 530 49.1
Nitab4.5_0001951g0070 Nicotiana tabacum HOM05D004671 ORTHO05D005638 1.2e-119 434.5 561 46.0
vmacro21316 Vaccinium macrocarpon HOM05D004671 ORTHO05D005638 1.6e-119 434.1 546 47.3
TWI14G0685 Tripterygium wilfordii HOM05D004671 ORTHO05D005638 1.7e-118 430.6 545 47.5
arahy.Tifrunner.gnm1.ann1.U8RPI8 Arachis hypogaea HOM05D004671 ORTHO05D005638 2.9e-118 429.9 617 43.1
Rhsim09G0198100 Rhododendron simsii HOM05D004671 ORTHO05D005638 5.6e-117 425.6 511 48.9
Actinidia03123 Actinidia chinensis HOM05D004671 ORTHO05D005638 7.3e-117 425.2 451 52.8
Aqoxy3G03421 Aquilegia oxysepala HOM05D004671 ORTHO05D005638 7.3e-117 425.2 547 47.0
Ca_10754_v3 Cicer arietinum L. HOM05D004671 ORTHO05D005638 9.5e-117 424.9 547 46.4
Aa31LG4G17500 Aethionema arabicum HOM05D004671 ORTHO05D005638 4.7e-116 422.5 543 44.8
SHI26612 Sapria himalayana HOM05D004671 ORTHO05D005638 3.1e-115 419.9 542 46.3
ECA233G0868 Erigeron canadensis HOM05D004671 ORTHO05D005638 5.2e-115 419.1 546 45.2
Potri.015G144900 Populus trichocarpa HOM05D004671 ORTHO05D005638 7.5e-114 415.2 546 46.9
Cc02_g02840 Coffea canephora HOM05D004671 ORTHO05D005638 1.3e-113 414.5 549 44.1
THA.LOC104818634 Tarenaya hassleriana HOM05D004671 ORTHO05D005638 2.2e-113 413.7 546 44.5
AL6G42740 Arabidopsis lyrata HOM05D004671 ORTHO05D005638 4.9e-113 412.5 545 44.8
AL5G28510 Arabidopsis lyrata HOM05D004671 ORTHO05D005638 7.0e-112 408.7 545 44.6
TPR.G27007 Trifolium pratense HOM05D004671 ORTHO05D005638 1.6e-111 407.5 548 45.6
Sp5g13050 Schrenkiella parvula HOM05D004671 ORTHO05D005638 4.6e-111 406.0 545 43.5
Psat6g198360 Pisum sativum HOM05D004671 ORTHO05D005638 1.0e-110 404.8 546 45.6
Lj5g0019412 Lotus japonicus HOM05D004671 ORTHO05D005638 2.3e-110 403.7 544 45.4
GSVIVG01017918001 Vitis vinifera HOM05D004671 ORTHO05D005638 6.6e-110 402.1 542 46.1
HanXRQChr15g0497081 Helianthus annuus HOM05D004671 ORTHO05D005638 8.6e-110 401.7 545 44.4
AT3G49000 Arabidopsis thaliana HOM05D004671 ORTHO05D005638 1.5e-109 401.0 546 43.4
Thhalv10010290m.g Eutrema salsugineum HOM05D004671 ORTHO05D005638 2.5e-109 400.2 545 43.7
BcaC01g02382 Brassica carinata HOM05D004671 ORTHO05D005638 5.6e-109 399.1 545 43.3
BolC3t18845H Brassica oleracea HOM05D004671 ORTHO05D005638 5.6e-109 399.1 545 43.3
HanXRQChr06g0163751 Helianthus annuus HOM05D004671 ORTHO05D005638 5.6e-109 399.1 543 44.2
Lsat_1_v5_gn_8_8441 Lactuca sativa HOM05D004671 ORTHO05D005638 5.6e-109 399.1 546 44.0
Sabra15G0154400 Salix brachista HOM05D004671 ORTHO05D005638 9.5e-109 398.3 571 44.8
C03p65870 Brassica napus HOM05D004671 ORTHO05D005638 1.2e-108 397.9 545 43.1
HanXRQChr10g0304161 Helianthus annuus HOM05D004671 ORTHO05D005638 1.6e-108 397.5 546 44.5
PSO017G5643 Papaver somniferum HOM05D004671 ORTHO05D005638 4.0e-107 392.9 546 44.3
MELO3C031814.2 Cucumis melo HOM05D004671 ORTHO05D005638 1.2e-106 391.3 496 46.0
PSO063G7539 Papaver somniferum HOM05D004671 ORTHO05D005638 1.5e-106 391.0 546 44.3
BcaB02g09572 Brassica carinata HOM05D004671 ORTHO05D005638 2.0e-106 390.6 544 42.6
Lsat_1_v5_gn_3_14041 Lactuca sativa HOM05D004671 ORTHO05D005638 2.0e-106 390.6 547 44.6
Medtr1g101100 Medicago truncatula HOM05D004671 ORTHO05D005638 5.8e-106 389.0 547 43.5
CARHR157820 Cardamine hirsuta HOM05D004671 ORTHO05D005638 7.5e-106 388.7 547 43.1
EL10Ac3g05622 Beta vulgaris HOM05D004671 ORTHO05D005638 9.8e-106 388.3 548 42.7
A06p28000 Brassica napus HOM05D004671 ORTHO05D005638 8.3e-105 385.2 547 42.2
AUR62015967 Chenopodium quinoa HOM05D004671 ORTHO05D005638 1.1e-104 384.8 567 42.3
SGA_v2.0_scaffold60G21057 Striga asiatica HOM05D004671 ORTHO05D005638 1.9e-104 384.0 544 41.9
Sc13g0008790 Simmondsia chinensis HOM05D004671 ORTHO05D005638 2.4e-104 383.6 548 42.9
BraA06t25741Z Brassica rapa HOM05D004671 ORTHO05D005638 3.2e-104 383.3 545 41.7
Hund04757 Selenicereus undatus HOM05D004671 ORTHO05D005638 2.1e-103 380.6 542 43.2
Sed0007536 Sechium edule HOM05D004671 ORTHO05D005638 1.0e-102 378.3 455 49.0
SalBow1G2445 Salvia bowleyana HOM05D004671 ORTHO05D005638 5.1e-102 375.9 542 41.9
Migut.K00770 Erythranthe guttata HOM05D004671 ORTHO05D005638 8.6e-102 375.2 541 42.5
Thhalv10003189m.g Eutrema salsugineum HOM05D004671 ORTHO05D005638 3.3e-101 373.2 543 42.9
HPP92_020192 Vanilla planifolia HOM05D004671 ORTHO05D005638 1.2e-100 371.3 547 42.4
SalBow1G5895 Salvia bowleyana HOM05D004671 ORTHO05D005638 1.6e-100 370.9 552 41.3
Carub.0005s1517 Capsella rubella HOM05D004671 ORTHO05D005638 1.8e-99 367.5 558 43.0
Sed0027520 Sechium edule HOM05D004671 ORTHO05D005638 1.9e-96 357.5 432 46.8
Ah.13g068640 Amaranthus hybridus HOM05D004671 ORTHO05D005638 9.2e-96 355.1 544 39.9
Haze_13677 Corylus avellana HOM05D004671 ORTHO05D005638 6.6e-94 349.0 686 37.0
Peaxi162Scf00848g00012 Petunia axillaris HOM05D004671 ORTHO05D005638 8.6e-94 348.6 394 49.7
ATR0737G144 Amborella trichopoda HOM05D004671 ORTHO05D005638 3.6e-92 343.2 543 41.4
Solyc06g036000.4 Solanum lycopersicum HOM05D004671 ORTHO05D005638 1.4e-91 341.3 394 50.5
AUR62021173 Chenopodium quinoa HOM05D004671 ORTHO05D005638 2.0e-90 337.4 542 40.0
Sc13g0008760 Simmondsia chinensis HOM05D004671 ORTHO05D005638 9.9e-90 335.1 525 40.8
Carub.0004s0531 Capsella rubella HOM05D004671 ORTHO05D005638 2.9e-89 333.6 545 39.1
Nitab4.5_0000080g0100 Nicotiana tabacum HOM05D004671 ORTHO05D005638 2.1e-84 317.4 568 39.1
unitig_37.g12531 Utricularia gibba HOM05D004671 ORTHO05D005638 1.8e-83 314.3 578 38.4
Pp3c16_7220 Physcomitrium patens HOM05D004671 ORTHO05D005638 7.6e-82 308.9 573 37.2
AagrBONN_evm.TU.Sc2ySwM_344.423 Anthoceros agrestis HOM05D004671 ORTHO05D005638 2.3e-78 297.4 567 35.1
Sopen06g011780 Solanum pennellii HOM05D004671 ORTHO05D005638 2.5e-77 293.9 342 48.8
Mapoly0133s0004 Marchantia polymorpha HOM05D004671 ORTHO05D005638 2.6e-74 283.9 562 35.4
Sc13g0008680 Simmondsia chinensis HOM05D004671 ORTHO05D005638 9.9e-74 282.0 486 39.1
Zm00001eb160040 Zea mays HOM05D004671 ORTHO05D005638 5.4e-72 276.2 549 36.6
MD07G1271300 Malus domestica HOM05D004671 ORTHO05D005638 3.0e-70 270.4 292 54.1
arahy.Tifrunner.gnm1.ann1.R5FQEP Arachis hypogaea HOM05D004671 ORTHO05D005638 4.3e-69 266.5 403 42.7
CDE04G3622 Ceratophyllum demersum HOM05D004671 ORTHO05D005638 2.1e-68 264.2 348 44.8
QL09p013914 Quercus lobata HOM05D004671 ORTHO05D005638 8.1e-68 262.3 285 54.0
Os01g0679000 Oryza sativa ssp. japonica HOM05D004671 ORTHO05D005638 1.1e-64 251.9 546 35.2
arahy.Tifrunner.gnm1.ann1.4LKL39 Arachis hypogaea HOM05D004671 ORTHO05D005638 2.8e-60 237.3 351 42.5
CSS0035516 Camellia sinensis var. sinensis HOM05D004671 ORTHO05D005638 1.2e-58 231.9 275 53.1
SMO143G0293 Selaginella moellendorffii HOM05D004671 ORTHO05D005638 1.2e-55 221.9 500 34.6
Ah.13g076510 Amaranthus hybridus HOM05D004671 ORTHO05D007692 6.9e-51 206.1 348 37.9
Oeu004097.1 Olea europaea HOM05D004671 ORTHO05D005638 6.5e-49 199.5 230 50.0
SMO276G0042 Selaginella moellendorffii HOM05D004671 ORTHO05D005638 1.9e-48 198.0 454 33.0
Migut.K01220 Erythranthe guttata HOM05D004671 ORTHO05D005638 4.2e-48 196.8 278 42.8
Oeu002719.1 Olea europaea HOM05D004671 ORTHO05D005638 7.2e-40 169.5 315 37.5
HanXRQChr06g0163701 Helianthus annuus HOM05D001754 ORTHO05D005638 5.5e-32 143.3 356 33.1
Glyma.20G157700 Glycine max HOM05D004671 ORTHO05D005638 6.1e-31 139.8 143 48.3
BolC8t50021H Brassica oleracea HOM05D004671 ORTHO05D005638 6.7e-30 136.3 157 44.6
CSS0016908 Camellia sinensis var. sinensis HOM05D004671 ORTHO05D005638 6.7e-30 136.3 133 50.4
C08p23970 Brassica napus HOM05D004671 ORTHO05D005638 1.1e-29 135.6 157 45.2
CDE04G1371 Ceratophyllum demersum HOM05D004671 ORTHO05D005638 2.2e-28 131.3 169 45.0
BcaB01g00761 Brassica carinata HOM05D004671 ORTHO05D005638 6.3e-28 129.8 228 36.4
BcaC07g39376 Brassica carinata HOM05D004671 ORTHO05D005638 1.4e-27 128.6 152 44.1
Cre16.g673900 Chlamydomonas reinhardtii HOM05D004671 ORTHO05D005638 4.1e-27 127.1 658 22.6
Zm00001eb440850 Zea mays HOM05D004671 ORTHO05D005638 2.2e-25 121.3 206 38.3
CBR_g5700 Chara braunii HOM05D004671 ORTHO05D005638 2.9e-25 120.9 182 40.7
Glyma.12G162990 Glycine max HOM05D004671 ORTHO05D005638 5.5e-24 116.7 137 46.0
MCO01G383 Micromonas commoda HOM05D004671 ORTHO05D005638 3.6e-23 114.0 493 25.2
CBR_g5701 Chara braunii HOM05D004671 ORTHO05D005638 1.1e-19 102.4 213 29.1
CAN.G527.1 Capsicum annuum HOM05D004671 ORTHO05D005638 1.7e-17 95.1 249 32.1
Peaxi162Scf00848g00015 Petunia axillaris HOM05D004671 ORTHO05D005638 8.0e-15 86.3 132 34.8
RcHm_v2.0_Chr1g0346601 Rosa chinensis HOM05D004671 ORTHO05D005638 2.3e-14 84.7 66 72.7
AL5G14400 Arabidopsis lyrata HOM05D004671 ORTHO05D005638 5.2e-14 83.6 247 28.7
RcHm_v2.0_Chr2g0108991 Rosa chinensis HOM05D004671 ORTHO05D005638 1.7e-12 78.6 66 69.7
Cre11.g476376 Chlamydomonas reinhardtii HOM05D030013 ORTHO05D028799 6.3e-12 76.6 177 31.6
HanXRQChr06g0163721 Helianthus annuus HOM05D004671 ORTHO05D005638 1.2e-07 62.4 95 45.3
arahy.Tifrunner.gnm1.ann1.674JY7 Arachis hypogaea HOM05D004671 ORTHO05D038832 8.0e-07 59.7 89 41.6
arahy.Tifrunner.gnm1.ann1.X2DDWJ Arachis hypogaea HOM05D001074 ORTHO05D038832 8.9e-06 56.2 84 41.7


User provided reference genes

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