Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G3665 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.9e-306 1055.0 558 100.0
FAN10G1478 Fragaria x ananassa HOM05D001925 ORTHO05D005701 2.6e-303 1044.6 558 99.1
FAN03G1293 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.6e-300 1035.4 558 98.2
FAN06G1763 Fragaria x ananassa HOM05D001925 ORTHO05D005701 8.7e-299 1029.6 558 97.7
FAN06G3551 Fragaria x ananassa HOM05D001925 ORTHO05D005701 4.3e-298 1027.3 558 97.7
FvH4_7g14490 Fragaria vesca HOM05D001925 ORTHO05D005701 1.0e-294 1016.1 583 93.3
FAN01G0375 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.9e-293 1011.9 559 96.6
RcHm_v2.0_Chr1g0355901 Rosa chinensis HOM05D001925 ORTHO05D005701 1.1e-277 959.5 583 88.9
RcHm_v2.0_Chr2g0161261 Rosa chinensis HOM05D001925 ORTHO05D005701 5.5e-269 930.6 583 87.1
MD01G1065000 Malus domestica HOM05D001925 ORTHO05D005701 9.5e-213 743.8 581 67.3
Prupe.2G172000 Prunus persica HOM05D001925 ORTHO05D005701 4.2e-208 728.4 504 73.8
CiPaw.01G062800 Carya illinoinensis HOM05D001925 ORTHO05D005701 4.8e-204 714.9 584 63.9
Cfa003907 Carpinus fangiana HOM05D001925 ORTHO05D005701 4.3e-197 691.8 584 62.8
Haze_15511 Corylus avellana HOM05D001925 ORTHO05D005701 6.9e-195 684.5 584 62.3
QL04p053597 Quercus lobata HOM05D001925 ORTHO05D005701 1.9e-192 676.4 583 61.7
CANSAT56G3724 Cannabis sativa HOM05D001925 ORTHO05D005701 5.6e-189 664.8 583 61.4
vmacro13268 Vaccinium macrocarpon HOM05D001925 ORTHO05D005701 5.6e-189 664.8 585 60.0
GSVIVG01008477001 Vitis vinifera HOM05D001925 ORTHO05D005701 9.0e-187 657.5 583 59.9
Actinidia10039 Actinidia chinensis HOM05D001925 ORTHO05D005701 3.4e-186 655.6 517 63.8
Rhsim07G0013900 Rhododendron simsii HOM05D001925 ORTHO05D005701 3.4e-186 655.6 585 59.1
Glyma.18G234000 Glycine max HOM05D001925 ORTHO05D005701 1.1e-184 650.6 520 64.2
Duzib138G1334 Durio zibethinus HOM05D001925 ORTHO05D005701 5.5e-184 648.3 520 64.2
CSS0009302 Camellia sinensis var. sinensis HOM05D001925 ORTHO05D005701 7.1e-184 647.9 586 58.9
CSS0022743 Camellia sinensis var. sinensis HOM05D001925 ORTHO05D005701 7.1e-184 647.9 586 58.9
Potri.014G085900 Populus trichocarpa HOM05D001925 ORTHO05D005701 1.6e-183 646.7 585 61.2
Lj1g0000866 Lotus japonicus HOM05D001925 ORTHO05D005701 2.1e-183 646.4 520 62.9
Sabra14G0062200 Salix brachista HOM05D001925 ORTHO05D005701 1.0e-182 644.0 520 65.4
Psat4g001160 Pisum sativum HOM05D001925 ORTHO05D005701 1.3e-182 643.7 522 61.5
Lj6A578T43 Lonicera japonica HOM05D001925 ORTHO05D005701 1.8e-182 643.3 526 64.6
Lj6A572T62 Lonicera japonica HOM05D001925 ORTHO05D005701 1.1e-181 640.6 526 64.4
Ca_07928_v3 Cicer arietinum L. HOM05D001925 ORTHO05D005701 1.5e-181 640.2 521 62.0
VMungo1383G1901 Vigna mungo HOM05D001925 ORTHO05D005701 1.5e-181 640.2 520 63.1
arahy.Tifrunner.gnm1.ann1.69YTHK Arachis hypogaea HOM05D001925 ORTHO05D005701 2.5e-181 639.4 519 62.4
Thecc.01G357800 Theobroma cacao HOM05D001925 ORTHO05D005701 2.5e-181 639.4 521 65.1
Medtr7g077840 Medicago truncatula HOM05D001925 ORTHO05D005701 4.3e-181 638.6 586 58.2
TAR636G2317 Trochodendron aralioides HOM05D001925 ORTHO05D005701 2.8e-180 636.0 526 62.9
Atru.chr5.509 Acer truncatum HOM05D001925 ORTHO05D005701 3.7e-180 635.6 521 63.1
Gohir.A11G089700 Gossypium hirsutum HOM05D001925 ORTHO05D005701 8.2e-180 634.4 520 63.1
Manes.05G033300 Manihot esculenta HOM05D001925 ORTHO05D005701 1.4e-179 633.6 584 59.2
Phvul.008G061800 Phaseolus vulgaris HOM05D001925 ORTHO05D005701 4.0e-179 632.1 520 62.9
Ciclev10019660m.g Citrus clementina HOM05D001925 ORTHO05D005701 2.6e-178 629.4 520 62.7
Gorai.007G100400 Gossypium raimondii HOM05D001925 ORTHO05D005701 5.8e-178 628.2 520 62.9
Gohir.D11G094000 Gossypium hirsutum HOM05D001925 ORTHO05D005701 2.9e-177 625.9 520 63.1
Cpa.g.sc11.17 Carica papaya HOM05D001925 ORTHO05D005701 5.0e-177 625.2 583 56.1
COL.COLO4_12725 Corchorus olitorius HOM05D001925 ORTHO05D005701 6.5e-177 624.8 520 63.3
MELO3C021204.2 Cucumis melo HOM05D001925 ORTHO05D005701 1.6e-175 620.2 503 63.2
ClCG06G003620 Citrullus lanatus HOM05D001925 ORTHO05D005701 5.1e-174 615.1 503 62.8
Sed0000605 Sechium edule HOM05D001925 ORTHO05D005701 9.7e-173 610.9 503 62.6
THA.LOC104825846 Tarenaya hassleriana HOM05D001925 ORTHO05D005701 1.6e-172 610.1 519 61.3
TWI73G0882 Tripterygium wilfordii HOM05D001925 ORTHO05D005701 1.6e-172 610.1 516 60.1
Nn6g33390 Nelumbo nucifera HOM05D001925 ORTHO05D005701 2.2e-172 609.8 520 59.6
Nitab4.5_0000583g0200 Nicotiana tabacum HOM05D001925 ORTHO05D005701 2.2e-172 609.8 512 60.2
Eucgr.L01587 Eucalyptus grandis HOM05D001925 ORTHO05D005701 1.4e-171 607.1 523 60.8
arahy.Tifrunner.gnm1.ann1.NC5V2N Arachis hypogaea HOM05D001925 ORTHO05D005701 1.2e-170 604.0 525 60.6
arahy.Tifrunner.gnm1.ann1.9GVB5D Arachis hypogaea HOM05D001925 ORTHO05D005701 1.5e-170 603.6 525 60.2
Cc02_g38160 Coffea canephora HOM05D001925 ORTHO05D005701 2.6e-170 602.8 520 61.0
Peaxi162Scf00020g00723 Petunia axillaris HOM05D001925 ORTHO05D005701 2.6e-170 602.8 513 60.2
Migut.B01766 Erythranthe guttata HOM05D001925 ORTHO05D005701 5.9e-170 601.7 514 59.9
CAN.G78.90 Capsicum annuum HOM05D001925 ORTHO05D005701 2.2e-169 599.7 516 59.7
Lalb_Chr13g0304081 Lupinus albus HOM05D001925 ORTHO05D005701 6.5e-169 598.2 520 59.0
MBI04_g28752_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D005701 1.6e-167 593.6 508 60.8
Oeu015817.1 Olea europaea HOM05D001925 ORTHO05D005701 7.9e-167 591.3 510 59.6
SGA_v2.0_scaffold4G02302 Striga asiatica HOM05D001925 ORTHO05D005701 7.9e-167 591.3 505 60.8
DCAR_007446 Daucus carota HOM05D001925 ORTHO05D005701 1.8e-166 590.1 519 62.2
Sopen01g038540 Solanum pennellii HOM05D001925 ORTHO05D005701 4.3e-165 585.5 502 59.8
PGSC0003DMG400000174 Solanum tuberosum HOM05D001925 ORTHO05D005701 9.7e-165 584.3 501 59.7
Lj7A511T78 Lonicera japonica HOM05D001925 ORTHO05D005701 1.3e-164 583.9 504 61.9
Solyc01g094760.3 Solanum lycopersicum HOM05D001925 ORTHO05D005701 1.7e-164 583.6 502 59.8
HanXRQChr04g0121151 Helianthus annuus HOM05D001925 ORTHO05D005701 2.4e-163 579.7 586 54.3
Glyma.09G258700 Glycine max HOM05D001925 ORTHO05D005701 4.1e-163 578.9 520 59.2
SalBow3G0216 Salvia bowleyana HOM05D001925 ORTHO05D005701 4.5e-162 575.5 498 59.6
Eucgr.D01236 Eucalyptus grandis HOM05D001925 ORTHO05D005701 1.3e-161 573.9 520 58.5
Thhalv10005869m.g Eutrema salsugineum HOM05D001925 ORTHO05D005701 5.0e-161 572.0 519 57.8
AL7G22330 Arabidopsis lyrata HOM05D001925 ORTHO05D005701 1.4e-160 570.5 587 53.3
PGR004G0833 Punica granatum HOM05D001925 ORTHO05D005701 4.2e-160 568.9 585 53.3
TPR.G37845 Trifolium pratense HOM05D001925 ORTHO05D005701 9.4e-160 567.8 585 54.2
ECA236G3836 Erigeron canadensis HOM05D001925 ORTHO05D005701 1.6e-159 567.0 504 58.3
AT4G29910 Arabidopsis thaliana HOM05D001925 ORTHO05D005701 2.7e-159 566.2 516 57.0
CARHR237820 Cardamine hirsuta HOM05D001925 ORTHO05D005701 3.6e-159 565.8 518 57.7
Nitab4.5_0006018g0050 Nicotiana tabacum HOM05D001925 ORTHO05D005701 7.9e-159 564.7 485 59.4
Sp5g05460 Schrenkiella parvula HOM05D001925 ORTHO05D005701 1.5e-157 560.5 522 56.3
BraA07t29988Z Brassica rapa HOM05D001925 ORTHO05D005701 2.0e-157 560.1 505 57.2
BcaB02g07622 Brassica carinata HOM05D001925 ORTHO05D005701 2.6e-157 559.7 516 56.8
A07p23240 Brassica napus HOM05D001925 ORTHO05D005701 3.3e-157 559.3 505 57.0
BcaC08g44822 Brassica carinata HOM05D001925 ORTHO05D005701 1.3e-156 557.4 506 57.1
Aqoxy2G04021 Aquilegia oxysepala HOM05D001925 ORTHO05D005701 4.8e-156 555.4 587 50.1
C06p24120 Brassica napus HOM05D001925 ORTHO05D005701 6.3e-156 555.1 506 56.9
ATR0068G004 Amborella trichopoda HOM05D001925 ORTHO05D005701 8.2e-156 554.7 489 57.3
BolC6t37570H Brassica oleracea HOM05D001925 ORTHO05D005701 1.8e-155 553.5 506 56.9
Lsat_1_v5_gn_7_4881 Lactuca sativa HOM05D001925 ORTHO05D005701 1.0e-153 547.7 515 56.3
Hund16654 Selenicereus undatus HOM05D001925 ORTHO05D005701 1.5e-149 533.9 574 51.9
BcaB02g07621 Brassica carinata HOM05D001925 ORTHO05D005701 2.6e-149 533.1 516 55.2
PSO384G0118 Papaver somniferum HOM05D001925 ORTHO05D005701 5.7e-149 531.9 587 54.0
Aa31LG2G20640 Aethionema arabicum HOM05D001925 ORTHO05D005701 8.2e-148 528.1 520 54.4
Ah.05g180520 Amaranthus hybridus HOM05D001925 ORTHO05D001453 8.2e-148 528.1 512 55.5
CDE08G0676 Ceratophyllum demersum HOM05D001925 ORTHO05D005701 8.2e-148 528.1 491 57.2
EL10Ac1g00402 Beta vulgaris HOM05D001925 ORTHO05D005701 2.4e-147 526.6 514 56.0
AUR62022580 Chenopodium quinoa HOM05D001925 ORTHO05D005701 5.4e-139 498.8 523 52.0
Dinv43827 Davidia involucrata HOM05D001925 ORTHO05D005701 1.2e-138 497.7 398 63.8
AUR62004371 Chenopodium quinoa HOM05D001925 ORTHO05D005701 8.3e-132 474.9 531 49.2
Carub.0007s1073 Capsella rubella HOM05D001925 ORTHO05D005701 2.9e-124 449.9 408 57.6
CsaV3_6G000620 Cucumis sativus L. HOM05D001925 ORTHO05D005701 9.2e-123 444.9 381 58.8
Zm00001eb214490 Zea mays HOM05D001925 ORTHO05D005701 9.8e-117 424.9 502 47.6
Os03g0759500 Oryza sativa ssp. japonica HOM05D001925 ORTHO05D005701 1.6e-114 417.5 497 47.7
Sc01g0003490 Simmondsia chinensis HOM05D001925 ORTHO05D005701 1.1e-112 411.4 468 50.4
SEGI_03119 Sequoiadendron giganteum HOM05D001925 ORTHO05D005701 1.4e-110 404.4 602 39.7
Carub.0002s1689 Capsella rubella HOM05D001925 ORTHO05D005701 2.6e-109 400.2 356 58.4
PSO339G3045 Papaver somniferum HOM05D001925 ORTHO05D005701 2.6e-109 400.2 494 47.4
arahy.Tifrunner.gnm1.ann1.IR4EKV Arachis hypogaea HOM05D001925 ORTHO05D005701 4.6e-106 389.4 319 63.9
BcaC07g40027 Brassica carinata HOM05D001925 ORTHO05D005701 5.4e-99 365.9 405 48.9
Oeu050467.2 Olea europaea HOM05D001925 ORTHO05D005701 2.3e-97 360.5 511 44.2
arahy.Tifrunner.gnm1.ann1.SID920 Arachis hypogaea HOM05D001925 ORTHO05D005701 2.0e-93 347.4 403 50.4
ECA236G4017 Erigeron canadensis HOM05D001925 ORTHO05D005701 7.6e-93 345.5 300 60.3
SMO147G0283 Selaginella moellendorffii HOM05D001925 ORTHO05D005701 6.4e-92 342.4 516 38.6
HPP92_019868 Vanilla planifolia HOM05D001925 ORTHO05D005701 3.2e-91 340.1 353 52.1
AagrBONN_evm.TU.Sc2ySwM_368.2511 Anthoceros agrestis HOM05D001925 ORTHO05D005701 1.1e-88 331.6 490 40.0
MD07G1135400 Malus domestica HOM05D001925 ORTHO05D005701 6.2e-87 325.9 345 55.4
Pp3c17_13600 Physcomitrium patens HOM05D001925 ORTHO05D005701 2.4e-83 313.9 513 37.8
arahy.Tifrunner.gnm1.ann1.D25PMP Arachis hypogaea HOM05D001925 ORTHO05D005701 4.2e-83 313.2 377 48.3
Mapoly0177s0008 Marchantia polymorpha HOM05D001925 ORTHO05D005701 1.5e-80 304.7 503 37.4
C08p32440 Brassica napus HOM05D001925 ORTHO05D005701 5.3e-78 296.2 478 40.0
Potri.001G135975 Populus trichocarpa HOM05D001925 ORTHO05D005701 6.9e-78 295.8 309 53.1
BolC8t50859H Brassica oleracea HOM05D001925 ORTHO05D005701 2.6e-77 293.9 478 39.7
TPR.G26686 Trifolium pratense HOM05D001925 ORTHO05D005701 1.9e-59 234.6 273 49.8
FvH4_2g10060 Fragaria vesca HOM05D001925 ORTHO05D005701 5.7e-56 223.0 180 70.0
arahy.Tifrunner.gnm1.ann1.IM3547 Arachis hypogaea HOM05D001925 ORTHO05D005701 1.9e-51 208.0 204 58.8
arahy.Tifrunner.gnm1.ann1.FEJ64N Arachis hypogaea HOM05D001925 ORTHO05D005701 1.2e-50 205.3 238 53.8
Actinidia20895 Actinidia chinensis HOM05D001925 ORTHO05D005701 6.7e-49 199.5 195 50.8
FAN22G1210 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.0e-44 185.7 126 95.2
FAN24G1219 Fragaria x ananassa HOM05D001925 ORTHO05D005701 5.0e-44 183.3 105 85.7
Dinv43826 Davidia involucrata HOM05D001925 ORTHO05D005701 2.5e-43 181.0 111 82.0
BraA09t40455Z Brassica rapa HOM05D001925 ORTHO05D005701 7.4e-40 169.5 171 55.0
TPR.G16202 Trifolium pratense HOM05D001925 ORTHO05D005701 3.7e-39 167.2 123 65.9
FvH4_2g10061 Fragaria vesca HOM05D001925 ORTHO05D005701 4.8e-39 166.8 97 84.5
FAN15G3430 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.4e-38 165.2 104 77.9
CBR_g58810 Chara braunii HOM05D001925 ORTHO05D005701 1.5e-35 155.2 486 28.4
C06p24140 Brassica napus HOM05D001925 ORTHO05D005701 2.0e-32 144.8 113 63.7
BcaC08g44824 Brassica carinata HOM05D001925 ORTHO05D005701 2.2e-28 131.3 114 57.0
A09p50030 Brassica napus HOM05D001925 ORTHO05D005701 1.1e-27 129.0 88 69.3
MCO11G226 Micromonas commoda HOM05D001925 ORTHO05D005701 1.5e-27 128.6 583 23.3
A09p50040 Brassica napus HOM05D001925 ORTHO05D005701 3.2e-27 127.5 90 70.0
FAN27G0066 Fragaria x ananassa HOM05D001925 ORTHO05D005701 2.7e-26 124.4 108 85.2
PRCOL_00005952 Prasinoderma coloniale HOM05D001925 ORTHO05D005701 7.5e-24 116.3 497 26.2
Zm00001eb057980 Zea mays HOM05D001925 ORTHO05D005701 1.7e-23 115.2 196 38.3
arahy.Tifrunner.gnm1.ann1.ZHBQ27 Arachis hypogaea HOM05D002506 ORTHO05D002879 1.6e-21 108.6 88 61.4
MBI04_g47116_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D005701 1.4e-17 95.5 109 45.0
FvH4_2g10051 Fragaria vesca HOM05D001925 ORTHO05D045705 2.2e-15 88.2 97 59.8
C09p49930 Brassica napus HOM05D001925 ORTHO05D039571 3.5e-13 80.9 122 39.3
Cre07.g355200 Chlamydomonas reinhardtii HOM05D001925 ORTHO05D005701 1.5e-11 75.5 573 21.6
Thhalv10027287m.g Eutrema salsugineum HOM05D001925 ORTHO05D005701 4.3e-11 73.9 96 44.8
BcaC07g40074 Brassica carinata HOM05D001925 ORTHO05D005701 1.6e-10 72.0 80 50.0
SGA_v2.0_scaffold2881G54235 Striga asiatica HOM05D001925 ORTHO05D005701 2.9e-07 61.2 72 44.4


User provided reference genes

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