Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G3657 Fragaria x ananassa HOM05D005367 ORTHO05D006328 2.9e-134 481.9 240 100.0
FAN10G4254 Fragaria x ananassa HOM05D005367 ORTHO05D006328 5.0e-118 427.9 230 93.9
FvH4_7g29600 Fragaria vesca HOM05D005367 ORTHO05D006328 3.2e-101 372.1 213 89.2
FAN03G1577 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.7e-94 349.7 236 77.5
FAN06G3705 Fragaria x ananassa HOM05D005367 ORTHO05D006328 6.6e-86 321.2 213 79.8
FAN06G4288 Fragaria x ananassa HOM05D005367 ORTHO05D006328 6.6e-86 321.2 213 79.8
RcHm_v2.0_Chr1g0377581 Rosa chinensis HOM05D005367 ORTHO05D006328 9.8e-74 280.8 214 70.1
MD01G1202200 Malus domestica HOM05D005367 ORTHO05D006328 1.4e-40 170.6 239 49.0
Ciclev10021865m.g Citrus clementina HOM05D005367 ORTHO05D006328 2.1e-31 140.2 204 41.7
Dinv43805 Davidia involucrata HOM05D005367 ORTHO05D006328 4.8e-28 129.0 187 42.2
COL.COLO4_12698 Corchorus olitorius HOM05D005367 ORTHO05D006328 6.3e-28 128.6 160 44.4
QL09p013904 Quercus lobata HOM05D005367 ORTHO05D006328 1.1e-27 127.9 208 42.3
Atru.chr5.466 Acer truncatum HOM05D005367 ORTHO05D006328 1.4e-27 127.5 155 45.8
Duzib133G0249 Durio zibethinus HOM05D005367 ORTHO05D006328 2.4e-27 126.7 163 43.6
GSVIVG01026893001 Vitis vinifera HOM05D005367 ORTHO05D006328 5.3e-27 125.6 155 46.5
Cpa.g.sc18.245 Carica papaya HOM05D005367 ORTHO05D006328 9.0e-27 124.8 218 40.4
Thecc.01G360700 Theobroma cacao HOM05D005367 ORTHO05D006328 2.0e-26 123.6 157 44.6
TWI14G0016 Tripterygium wilfordii HOM05D005367 ORTHO05D006328 2.0e-26 123.6 200 39.0
Gohir.D08G152300 Gossypium hirsutum HOM05D005367 ORTHO05D006328 2.6e-26 123.2 170 41.8
Haze_15487 Corylus avellana HOM05D005367 ORTHO05D006328 3.4e-26 122.9 211 35.5
Gohir.A08G130800 Gossypium hirsutum HOM05D005367 ORTHO05D006328 3.4e-26 122.9 173 43.4
Nn1g01501 Nelumbo nucifera HOM05D005367 ORTHO05D006328 4.5e-26 122.5 194 40.7
Prupe.2G167900 Prunus persica HOM05D005367 ORTHO05D006328 5.9e-26 122.1 202 39.6
Atru.chr1.441 Acer truncatum HOM05D005367 ORTHO05D006328 1.7e-25 120.6 165 43.6
Cc02_g37850 Coffea canephora HOM05D005367 ORTHO05D006328 2.2e-25 120.2 200 36.5
Gorai.004G158200 Gossypium raimondii HOM05D005367 ORTHO05D006328 2.2e-25 120.2 188 39.4
TAR375G0799 Trochodendron aralioides HOM05D005367 ORTHO05D006328 2.2e-25 120.2 204 39.2
TAR636G2389 Trochodendron aralioides HOM05D003133 ORTHO05D003642 2.2e-25 120.2 226 37.2
MD07G1139200 Malus domestica HOM05D005367 ORTHO05D006328 2.9e-25 119.8 200 39.5
CSS0033809 Camellia sinensis var. sinensis HOM05D005367 ORTHO05D006328 3.8e-25 119.4 165 44.8
MD01G1057500 Malus domestica HOM05D005367 ORTHO05D006328 5.0e-25 119.0 201 38.3
Manes.06G148200 Manihot esculenta HOM05D005367 ORTHO05D006328 5.0e-25 119.0 166 44.6
QL08p049031 Quercus lobata HOM05D005367 ORTHO05D006328 5.0e-25 119.0 169 39.6
RcHm_v2.0_Chr1g0355051 Rosa chinensis HOM05D005367 ORTHO05D006328 5.0e-25 119.0 184 38.6
MSTRG.20826 Avicennia marina HOM05D005367 ORTHO05D006328 8.5e-25 118.2 170 40.6
Duzib205G1257 Durio zibethinus HOM05D005367 ORTHO05D006328 1.4e-24 117.5 185 37.8
Gohir.A11G088100 Gossypium hirsutum HOM05D005367 ORTHO05D006328 1.4e-24 117.5 171 42.7
CANSAT56G3377 Cannabis sativa HOM05D005367 ORTHO05D006328 1.9e-24 117.1 175 38.9
FAN10G0042 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.9e-24 117.1 193 40.4
Potri.014G082600 Populus trichocarpa HOM05D005367 ORTHO05D006328 2.5e-24 116.7 170 39.4
FvH4_7g14150 Fragaria vesca HOM05D005367 ORTHO05D006328 3.2e-24 116.3 201 39.8
FAN06G0563 Fragaria x ananassa HOM05D005367 ORTHO05D006328 4.2e-24 115.9 201 39.8
Gorai.007G098700 Gossypium raimondii HOM05D005367 ORTHO05D006328 4.2e-24 115.9 221 38.5
Migut.B01742 Erythranthe guttata HOM05D005367 ORTHO05D006328 5.5e-24 115.5 160 41.2
FAN01G2456 Fragaria x ananassa HOM05D005367 ORTHO05D006328 5.5e-24 115.5 194 39.7
Prupe.2G295600 Prunus persica HOM05D005367 ORTHO05D006328 5.5e-24 115.5 119 55.5
Gohir.D11G092400 Gossypium hirsutum HOM05D005367 ORTHO05D006328 7.2e-24 115.2 221 38.5
Nn6g33454 Nelumbo nucifera HOM05D005367 ORTHO05D006328 7.2e-24 115.2 214 36.0
Cfa003939 Carpinus fangiana HOM05D005367 ORTHO05D006328 9.3e-24 114.8 216 35.6
ClCG06G003800 Citrullus lanatus HOM05D005367 ORTHO05D006328 9.3e-24 114.8 199 35.7
HanXRQChr16g0522831 Helianthus annuus HOM05D005367 ORTHO05D006328 1.2e-23 114.4 161 42.2
CSS0040093 Camellia sinensis var. sinensis HOM05D005367 ORTHO05D006328 1.6e-23 114.0 196 39.8
CiPaw.02G029900 Carya illinoinensis HOM05D005367 ORTHO05D006328 2.1e-23 113.6 182 37.4
FAN03G1221 Fragaria x ananassa HOM05D005367 ORTHO05D006328 2.1e-23 113.6 193 39.9
Oeu056369.1 Olea europaea HOM05D005367 ORTHO05D006328 2.1e-23 113.6 160 42.5
SalBow3G2019 Salvia bowleyana HOM05D005367 ORTHO05D006328 2.1e-23 113.6 150 45.3
Potri.002G158500 Populus trichocarpa HOM05D005367 ORTHO05D006328 3.6e-23 112.8 167 39.5
Atru.chr1.440 Acer truncatum HOM05D005367 ORTHO05D006328 4.6e-23 112.5 204 37.3
Hma1.2p1_0001F.1_g001380 Hydrangea macrophylla HOM05D005367 ORTHO05D006328 4.6e-23 112.5 202 37.6
Glyma.18G231900 Glycine max HOM05D005367 ORTHO05D006328 6.1e-23 112.1 192 35.9
MELO3C021217.2 Cucumis melo HOM05D005367 ORTHO05D006328 7.9e-23 111.7 205 34.6
Lalb_Chr24g0401631 Lupinus albus HOM05D005367 ORTHO05D006328 7.9e-23 111.7 156 40.4
CsaV3_6G000470 Cucumis sativus L. HOM05D005367 ORTHO05D006328 1.0e-22 111.3 198 34.3
Sed0017642 Sechium edule HOM05D005367 ORTHO05D006328 1.0e-22 111.3 157 40.1
vmacro13291 Vaccinium macrocarpon HOM05D005367 ORTHO05D006328 1.3e-22 110.9 162 42.0
Nitab4.5_0001702g0150 Nicotiana tabacum HOM05D005367 ORTHO05D006328 1.8e-22 110.5 164 38.4
Actinidia20916 Actinidia chinensis HOM05D005367 ORTHO05D006328 2.3e-22 110.2 158 42.4
Lalb_Chr01g0011531 Lupinus albus HOM05D005367 ORTHO05D006328 2.3e-22 110.2 156 39.7
Ciclev10006075m.g Citrus clementina HOM05D005367 ORTHO05D006328 3.0e-22 109.8 154 42.2
PSO478G0766 Papaver somniferum HOM05D005367 ORTHO05D006328 3.0e-22 109.8 215 35.8
Ca_07909_v3 Cicer arietinum L. HOM05D005367 ORTHO05D006328 3.9e-22 109.4 173 38.2
Manes.01G258500 Manihot esculenta HOM05D005367 ORTHO05D006328 5.1e-22 109.0 146 42.5
SGA_v2.0_scaffold11G05663 Striga asiatica HOM05D000368 ORTHO05D006328 5.1e-22 109.0 160 40.6
Nitab4.5_0008050g0010 Nicotiana tabacum HOM05D005367 ORTHO05D006328 6.7e-22 108.6 182 35.2
Aqoxy7G00339 Aquilegia oxysepala HOM05D005367 ORTHO05D006328 8.7e-22 108.2 154 39.6
Lj1g0004821 Lotus japonicus HOM05D005367 ORTHO05D006328 8.7e-22 108.2 201 35.3
COL.COLO4_14330 Corchorus olitorius HOM05D005367 ORTHO05D006328 1.1e-21 107.8 190 35.3
vmacro06668 Vaccinium macrocarpon HOM05D005367 ORTHO05D006328 1.9e-21 107.1 197 38.1
Eucgr.D02282 Eucalyptus grandis HOM05D005367 ORTHO05D006328 2.5e-21 106.7 207 35.3
RcHm_v2.0_Chr1g0354801 Rosa chinensis HOM05D005367 ORTHO05D006328 3.3e-21 106.3 185 36.8
Sopen05g028210 Solanum pennellii HOM05D005367 ORTHO05D006328 3.3e-21 106.3 218 37.6
Sc01g0003360 Simmondsia chinensis HOM05D005367 ORTHO05D006328 4.3e-21 105.9 181 40.9
Solyc05g049880.3 Solanum lycopersicum HOM05D005367 ORTHO05D006328 5.7e-21 105.5 199 38.2
Manes.05G036200 Manihot esculenta HOM05D005367 ORTHO05D006328 7.4e-21 105.1 162 39.5
DCAR_010300 Daucus carota HOM05D005367 ORTHO05D006328 1.3e-20 104.4 168 37.5
Hund16930 Selenicereus undatus HOM05D005367 ORTHO05D006328 1.3e-20 104.4 222 32.9
Eucgr.E00158 Eucalyptus grandis HOM05D005367 ORTHO05D006328 1.7e-20 104.0 158 39.2
THA.LOC104801446 Tarenaya hassleriana HOM05D005367 ORTHO05D006328 1.7e-20 104.0 156 38.5
Lj9A582T87 Lonicera japonica HOM05D005367 ORTHO05D006328 2.2e-20 103.6 198 36.4
PGR031G3282 Punica granatum HOM05D005367 ORTHO05D006328 2.2e-20 103.6 162 38.3
ECA234G3275 Erigeron canadensis HOM05D005367 ORTHO05D006328 2.8e-20 103.2 172 38.4
PGSC0003DMG400021656 Solanum tuberosum HOM05D005367 ORTHO05D006328 2.8e-20 103.2 194 35.1
PSO782G1827 Papaver somniferum HOM05D005367 ORTHO05D006328 3.7e-20 102.8 210 35.2
PGR042G0868 Punica granatum HOM05D005367 ORTHO05D006328 3.7e-20 102.8 145 41.4
TPR.G37815 Trifolium pratense HOM05D005367 ORTHO05D006328 1.4e-19 100.9 174 35.1
TWI59G0064 Tripterygium wilfordii HOM05D005367 ORTHO05D006328 1.4e-19 100.9 161 39.1
unitig_61.g26388 Utricularia gibba HOM05D005367 ORTHO05D006328 1.4e-19 100.9 168 39.3
arahy.Tifrunner.gnm1.ann1.D8DQXR Arachis hypogaea HOM05D005367 ORTHO05D006328 1.8e-19 100.5 176 35.2
EL10Ac1g00429 Beta vulgaris HOM05D005367 ORTHO05D006328 1.8e-19 100.5 195 35.4
Lsat_1_v5_gn_4_36280 Lactuca sativa HOM05D005367 ORTHO05D006328 2.4e-19 100.1 171 39.2
Peaxi162Scf00191g01425 Petunia axillaris HOM05D005367 ORTHO05D006328 3.1e-19 99.8 159 37.7
arahy.Tifrunner.gnm1.ann1.G5US7K Arachis hypogaea HOM05D005367 ORTHO05D006328 4.1e-19 99.4 176 35.2
VMungo1383G2792 Vigna mungo HOM05D005367 ORTHO05D006328 5.3e-19 99.0 161 37.3
Sp1g00570 Schrenkiella parvula HOM05D005367 ORTHO05D006328 4.5e-18 95.9 157 35.7
Phvul.008G065800 Phaseolus vulgaris HOM05D005367 ORTHO05D006328 5.9e-18 95.5 149 36.9
Psat3g109400 Pisum sativum HOM05D005367 ORTHO05D006328 1.3e-17 94.4 181 33.1
HPP92_027620 Vanilla planifolia HOM05D005367 ORTHO05D006328 1.3e-17 94.4 162 32.1
AUR62004342 Chenopodium quinoa HOM05D005367 ORTHO05D006328 1.7e-17 94.0 142 38.0
HPP92_022052 Vanilla planifolia HOM05D005367 ORTHO05D006328 1.7e-17 94.0 162 32.1
VMungo1383G2823 Vigna mungo HOM05D005367 ORTHO05D006328 1.7e-17 94.0 174 33.3
Carub.0001s0048 Capsella rubella HOM05D005367 ORTHO05D006328 3.8e-17 92.8 155 36.8
Medtr7g077380 Medicago truncatula HOM05D005367 ORTHO05D006328 1.1e-16 91.3 172 34.9
Ah.05g180710 Amaranthus hybridus HOM05D005367 ORTHO05D006328 1.9e-16 90.5 195 35.4
C08p53830 Brassica napus HOM05D006991 ORTHO05D009188 5.5e-16 89.0 155 35.5
BolC8t52897H Brassica oleracea HOM05D000368 ORTHO05D000289 5.5e-16 89.0 155 35.5
BraA09t42260Z Brassica rapa HOM05D005367 ORTHO05D006328 9.4e-16 88.2 155 34.8
AL1G10610 Arabidopsis lyrata HOM05D005367 ORTHO05D006328 1.6e-15 87.4 214 29.4
Potri.015G145000 Populus trichocarpa HOM05D005367 ORTHO05D006328 4.7e-15 85.9 124 39.5
Rhsim03G0187100 Rhododendron simsii HOM05D005367 ORTHO05D006328 7.9e-15 85.1 223 34.1
Thhalv10008538m.g Eutrema salsugineum HOM05D005367 ORTHO05D006328 1.4e-14 84.3 179 33.0
Actinidia34119 Actinidia chinensis HOM05D005367 ORTHO05D006328 1.8e-14 84.0 168 37.5
Dinv35219 Davidia involucrata HOM05D005367 ORTHO05D006328 1.1e-13 81.3 145 42.1
FAN28G3009 Fragaria x ananassa HOM05D005367 ORTHO05D006328 9.7e-13 78.2 114 44.7
AT1G01730 Arabidopsis thaliana HOM05D005367 ORTHO05D006328 1.3e-12 77.8 193 31.6
FAN10G0871 Fragaria x ananassa HOM05D005367 ORTHO05D006328 8.2e-12 75.1 99 48.5
FAN10G2377 Fragaria x ananassa HOM05D005367 ORTHO05D006328 8.2e-12 75.1 99 48.5
FAN10G3879 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.4e-11 74.3 85 49.4
MBI17_g24635_MAGBIO Magnolia biondii HOM05D005367 ORTHO05D006328 3.4e-10 69.7 201 24.4
DCAR_000242 Daucus carota HOM05D005367 ORTHO05D006328 6.5e-09 65.5 107 33.6
Sabra14G0059900 Salix brachista HOM05D005367 ORTHO05D006328 6.5e-09 65.5 222 28.4
Os04g0556900 Oryza sativa ssp. japonica HOM05D005367 ORTHO05D006328 9.4e-08 61.6 177 28.2
FAN10G1555 Fragaria x ananassa HOM05D005367 ORTHO05D006328 2.7e-07 60.1 109 35.8
AUR62022543 Chenopodium quinoa HOM05D000713 ORTHO05D000547 3.6e-07 59.7 81 39.5
Aa31LG1G11100 Aethionema arabicum HOM05D005367 ORTHO05D006328 8.0e-07 58.5 50 52.0
AUR62022549 Chenopodium quinoa HOM05D005367 ORTHO05D006328 8.0e-07 58.5 72 44.4


User provided reference genes

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