Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G3655 Fragaria x ananassa HOM05D005840 ORTHO05D007144 1.6e-152 542.7 274 100.0
FAN10G0422 Fragaria x ananassa HOM05D005840 ORTHO05D007144 2.4e-148 528.9 277 97.1
FAN03G2485 Fragaria x ananassa HOM05D005840 ORTHO05D007144 2.6e-139 498.8 266 95.1
FvH4_7g32940 Fragaria vesca HOM05D005840 ORTHO05D007144 1.6e-136 489.6 275 92.4
FAN01G0139 Fragaria x ananassa HOM05D005840 ORTHO05D007144 1.8e-135 486.1 277 91.3
RcHm_v2.0_Chr1g0382901 Rosa chinensis HOM05D005840 ORTHO05D007144 5.1e-127 458.0 294 83.7
Prupe.2G319100 Prunus persica HOM05D005840 ORTHO05D007144 1.1e-105 387.1 282 72.3
MD07G1299300 Malus domestica HOM05D005840 ORTHO05D007144 9.8e-102 374.0 278 71.9
MD01G1228500 Malus domestica HOM05D005840 ORTHO05D007144 8.6e-98 360.9 258 73.3
CANSAT21G1965 Cannabis sativa HOM05D005840 ORTHO05D007144 4.0e-95 352.1 278 66.5
Manes.01G043400 Manihot esculenta HOM05D005840 ORTHO05D007144 7.0e-92 341.3 285 63.5
QL09p007163 Quercus lobata HOM05D005840 ORTHO05D007144 1.6e-88 330.1 288 63.5
Thecc.03G209000 Theobroma cacao HOM05D005840 ORTHO05D007144 4.0e-87 325.5 263 65.8
Dinv35383 Davidia involucrata HOM05D005840 ORTHO05D007144 5.2e-87 325.1 269 64.7
TAR375G0732 Trochodendron aralioides HOM05D005840 ORTHO05D007144 6.8e-87 324.7 291 63.9
CSS0020402 Camellia sinensis var. sinensis HOM05D005840 ORTHO05D007144 7.5e-86 321.2 278 62.9
Medtr3g092810 Medicago truncatula HOM05D005840 ORTHO05D007144 2.9e-85 319.3 296 59.8
Solyc03g081220.1 Solanum lycopersicum HOM05D005840 ORTHO05D007144 1.1e-84 317.4 289 60.9
PGSC0003DMG400000562 Solanum tuberosum HOM05D005840 ORTHO05D007144 2.4e-84 316.2 286 60.8
Duzib084G0063 Durio zibethinus HOM05D005840 ORTHO05D007144 3.2e-84 315.8 246 68.3
Sopen03g021950 Solanum pennellii HOM05D005840 ORTHO05D007144 7.0e-84 314.7 288 60.4
Nitab4.5_0000319g0020 Nicotiana tabacum HOM05D005840 ORTHO05D007144 4.6e-83 312.0 283 61.1
Lalb_Chr08g0239571 Lupinus albus HOM05D005840 ORTHO05D007144 1.0e-82 310.8 297 59.3
Potri.015G002500 Populus trichocarpa HOM05D005840 ORTHO05D007144 1.3e-82 310.5 270 61.9
Psat5g071840 Pisum sativum HOM05D005840 ORTHO05D007144 1.7e-82 310.1 297 59.3
Atru.chr12.2435 Acer truncatum HOM05D005840 ORTHO05D007144 3.9e-82 308.9 262 65.6
Nitab4.5_0010809g0010 Nicotiana tabacum HOM05D005840 ORTHO05D007144 3.9e-82 308.9 283 60.8
Nn3g18788 Nelumbo nucifera HOM05D005840 ORTHO05D007144 8.6e-82 307.8 272 61.4
Lalb_Chr23g0271941 Lupinus albus HOM05D005840 ORTHO05D007144 1.1e-81 307.4 276 61.2
Oeu023690.1 Olea europaea HOM05D005840 ORTHO05D007144 3.3e-81 305.8 278 60.8
Ca_16781_v3 Cicer arietinum L. HOM05D005840 ORTHO05D007144 4.3e-81 305.4 283 59.7
Sabra15G0001600 Salix brachista HOM05D005840 ORTHO05D007144 4.3e-81 305.4 259 62.5
Cpa.g.sc3.150 Carica papaya HOM05D005840 ORTHO05D007144 2.1e-80 303.1 300 58.0
Cc02_g00800 Coffea canephora HOM05D005840 ORTHO05D007144 2.1e-80 303.1 292 59.6
PGR042G3207 Punica granatum HOM05D005840 ORTHO05D007144 2.8e-80 302.8 284 61.3
TPR.G33360 Trifolium pratense HOM05D005840 ORTHO05D007144 6.2e-80 301.6 298 56.7
Lj1g0001826 Lotus japonicus HOM05D005840 ORTHO05D007144 1.1e-79 300.8 295 56.3
Ciclev10021557m.g Citrus clementina HOM05D005840 ORTHO05D007144 1.4e-79 300.4 274 62.0
Glyma.06G136800 Glycine max HOM05D005840 ORTHO05D007144 1.4e-79 300.4 296 59.1
Gorai.004G125300 Gossypium raimondii HOM05D005840 ORTHO05D007144 2.3e-79 299.7 254 65.0
VMungo1309G2416 Vigna mungo HOM05D005840 ORTHO05D007144 3.1e-79 299.3 298 58.7
CAN.G303.23 Capsicum annuum HOM05D005840 ORTHO05D007144 4.0e-79 298.9 288 58.7
Phvul.009G044800 Phaseolus vulgaris HOM05D005840 ORTHO05D007144 6.8e-79 298.1 299 58.5
TWI14G0550 Tripterygium wilfordii HOM05D005840 ORTHO05D007144 1.5e-78 297.0 258 61.2
MELO3C005919.2 Cucumis melo HOM05D005840 ORTHO05D007144 2.6e-78 296.2 276 57.2
Glyma.04G228100 Glycine max HOM05D005840 ORTHO05D007144 7.5e-78 294.7 302 57.3
Gohir.A08G104700 Gossypium hirsutum HOM05D005840 ORTHO05D007144 7.5e-78 294.7 254 63.8
Gohir.D11G016500 Gossypium hirsutum HOM05D005840 ORTHO05D007144 7.5e-78 294.7 280 59.6
Lsat_1_v5_gn_9_49980 Lactuca sativa HOM05D005840 ORTHO05D007144 7.5e-78 294.7 281 57.7
Aa31LG11G3710 Aethionema arabicum HOM05D005840 ORTHO05D007144 1.7e-77 293.5 275 57.5
Thhalv10005309m.g Eutrema salsugineum HOM05D005840 ORTHO05D007144 2.9e-77 292.7 290 57.6
ClCG01G000060 Citrullus lanatus HOM05D005840 ORTHO05D007144 3.7e-77 292.4 224 65.2
Gorai.007G017300 Gossypium raimondii HOM05D005840 ORTHO05D007144 3.7e-77 292.4 280 60.0
Sed0003210 Sechium edule HOM05D005840 ORTHO05D007144 4.9e-77 292.0 277 58.8
PSO063G5360 Papaver somniferum HOM05D005840 ORTHO05D007144 6.4e-77 291.6 287 59.6
Carub.0006s2229 Capsella rubella HOM05D005840 ORTHO05D007144 1.1e-76 290.8 289 57.8
AL6G36040 Arabidopsis lyrata HOM05D005840 ORTHO05D007144 1.9e-76 290.0 294 56.8
DCAR_008987 Daucus carota HOM05D005840 ORTHO05D007144 2.4e-76 289.7 285 55.1
Gohir.A11G016700 Gossypium hirsutum HOM05D005840 ORTHO05D007144 3.2e-76 289.3 272 60.7
Sc19g0000580 Simmondsia chinensis HOM05D005840 ORTHO05D007144 3.2e-76 289.3 267 58.1
Sp2g22870 Schrenkiella parvula HOM05D005840 ORTHO05D007144 7.0e-76 288.1 290 56.9
CARHR188950 Cardamine hirsuta HOM05D005840 ORTHO05D007144 9.2e-76 287.7 294 56.5
BolC9t53635H Brassica oleracea HOM05D005840 ORTHO05D007144 1.2e-75 287.3 289 56.7
THA.LOC104798983 Tarenaya hassleriana HOM05D005840 ORTHO05D007144 1.2e-75 287.3 292 57.5
CiPaw.06G041000 Carya illinoinensis HOM05D005840 ORTHO05D007144 2.7e-75 286.2 212 69.3
AT5G24460 Arabidopsis thaliana HOM05D005840 ORTHO05D007144 3.5e-75 285.8 298 55.0
MBI12_g45814_MAGBIO Magnolia biondii HOM05D005840 ORTHO05D007144 3.5e-75 285.8 268 59.0
vmacro22785 Vaccinium macrocarpon HOM05D005840 ORTHO05D007144 3.5e-75 285.8 344 51.2
BraA09t36291Z Brassica rapa HOM05D005840 ORTHO05D007144 6.0e-75 285.0 279 57.0
Haze_00300 Corylus avellana HOM05D005840 ORTHO05D007144 1.7e-74 283.5 207 71.0
Migut.F00150 Erythranthe guttata HOM05D005840 ORTHO05D007144 2.3e-74 283.1 285 56.1
MSTRG.26975 Avicennia marina HOM05D005840 ORTHO05D007144 3.0e-74 282.7 274 56.2
BcaNung01236 Brassica carinata HOM05D005840 ORTHO05D007144 3.0e-74 282.7 297 54.9
A09p06480 Brassica napus HOM05D005840 ORTHO05D007144 3.0e-74 282.7 279 56.6
Hma1.2p1_0094F.1_g047400 Hydrangea macrophylla HOM05D005840 ORTHO05D007144 3.9e-74 282.3 210 70.0
Lsat_1_v5_gn_2_135020 Lactuca sativa HOM05D005840 ORTHO05D007144 3.9e-74 282.3 272 57.4
CsaV3_5G000100 Cucumis sativus L. HOM05D005840 ORTHO05D007144 5.0e-74 282.0 265 56.6
BcaC04g23543 Brassica carinata HOM05D005840 ORTHO05D007144 6.6e-74 281.6 292 55.1
C09p07230 Brassica napus HOM05D005840 ORTHO05D007144 6.6e-74 281.6 292 55.1
COL.COLO4_14373 Corchorus olitorius HOM05D005840 ORTHO05D007144 8.6e-74 281.2 203 70.4
SGA_v2.0_scaffold18G08468 Striga asiatica HOM05D005840 ORTHO05D007144 1.1e-73 280.8 282 56.7
Peaxi162Scf00912g10012 Petunia axillaris HOM05D005840 ORTHO05D007144 3.3e-73 279.3 201 70.1
Ah.13g070770 Amaranthus hybridus HOM05D005840 ORTHO05D007144 7.3e-73 278.1 306 52.9
unitig_37.g11995 Utricularia gibba HOM05D005840 ORTHO05D007144 1.6e-72 276.9 294 54.4
Rhsim03G0215700 Rhododendron simsii HOM05D005840 ORTHO05D007144 2.1e-72 276.6 214 65.9
Oeu055391.1 Olea europaea HOM05D005840 ORTHO05D007144 3.6e-72 275.8 225 64.0
A06p35290 Brassica napus HOM05D005840 ORTHO05D007144 4.7e-72 275.4 286 55.6
MSTRG.8611 Avicennia marina HOM05D005840 ORTHO05D007144 1.1e-71 274.2 297 53.5
BraA06t26455Z Brassica rapa HOM05D005840 ORTHO05D007144 1.4e-71 273.9 300 53.7
AUR62005991 Chenopodium quinoa HOM05D005840 ORTHO05D007144 6.8e-71 271.6 298 52.7
AUR62028079 Chenopodium quinoa HOM05D005840 ORTHO05D007144 1.2e-70 270.8 298 52.0
Actinidia34271 Actinidia chinensis HOM05D005840 ORTHO05D007144 3.4e-70 269.2 196 68.9
SalBow6G2506 Salvia bowleyana HOM05D005840 ORTHO05D007144 4.4e-70 268.9 276 56.5
Aqoxy6G02459 Aquilegia oxysepala HOM05D005840 ORTHO05D007144 9.9e-70 267.7 261 57.5
Aqoxy6G02489 Aquilegia oxysepala HOM05D005840 ORTHO05D007144 9.9e-70 267.7 261 57.5
PSO782G2283 Papaver somniferum HOM05D005840 ORTHO05D007144 2.2e-69 266.5 203 67.0
HanXRQChr10g0305331 Helianthus annuus HOM05D005840 ORTHO05D007144 2.9e-69 266.2 281 55.9
BcaB04g19821 Brassica carinata HOM05D005840 ORTHO05D007144 4.9e-69 265.4 208 66.3
C07p43220 Brassica napus HOM05D005840 ORTHO05D007144 4.9e-69 265.4 208 66.3
Lj3P895T18 Lonicera japonica HOM05D005840 ORTHO05D007144 8.3e-69 264.6 203 65.5
ECA232G4892 Erigeron canadensis HOM05D005840 ORTHO05D007144 4.6e-67 258.8 217 61.3
EL10Ac3g05171 Beta vulgaris HOM05D005840 ORTHO05D007144 2.3e-66 256.5 214 60.7
vmacro06444 Vaccinium macrocarpon HOM05D005840 ORTHO05D007144 6.6e-66 255.0 270 53.3
CDE04G1956 Ceratophyllum demersum HOM05D005840 ORTHO05D007144 7.3e-65 251.5 227 58.6
CDE12G0905 Ceratophyllum demersum HOM05D005840 ORTHO05D007144 2.4e-63 246.5 251 54.6
Actinidia08699 Actinidia chinensis HOM05D005840 ORTHO05D007144 1.1e-60 237.7 202 60.9
Sed0025728 Sechium edule HOM05D005840 ORTHO05D007144 1.9e-60 236.9 206 59.2
Cc11_g13290 Coffea canephora HOM05D005840 ORTHO05D007144 7.8e-59 231.5 230 59.6
unitig_92.g28240 Utricularia gibba HOM05D005840 ORTHO05D007144 2.5e-57 226.5 200 58.5
HPP92_022381 Vanilla planifolia HOM05D005840 ORTHO05D007144 2.0e-54 216.9 209 57.4
unitig_0.g2444 Utricularia gibba HOM05D005840 ORTHO05D007144 4.4e-54 215.7 200 55.0
SEGI_38224 Sequoiadendron giganteum HOM05D005840 ORTHO05D007144 3.0e-50 203.0 258 43.0
SHI02291 Sapria himalayana HOM05D005840 ORTHO05D007144 4.3e-49 199.1 205 53.2
ATR0661G235 Amborella trichopoda HOM05D005840 ORTHO05D007144 5.3e-47 192.2 198 53.5
BcaB04g19819 Brassica carinata HOM05D005840 ORTHO05D007144 9.9e-46 188.0 167 62.3
Zm00001eb272540 Zea mays HOM05D005840 ORTHO05D007144 3.7e-40 169.5 229 47.6
Os06g0712200 Oryza sativa ssp. japonica HOM05D005840 ORTHO05D007144 2.4e-39 166.8 222 48.6
Mapoly0031s0111 Marchantia polymorpha HOM05D005840 ORTHO05D007144 1.5e-38 164.1 211 41.7
Pp3c3_29470 Physcomitrium patens HOM05D005840 ORTHO05D007144 6.4e-37 158.7 231 38.1
COL.COLO4_12096 Corchorus olitorius HOM05D005840 ORTHO05D007144 1.4e-36 157.5 172 52.9
SMO140G0013 Selaginella moellendorffii HOM05D005840 ORTHO05D007144 3.2e-36 156.4 210 44.3
COL.COLO4_35601 Corchorus olitorius HOM05D005840 ORTHO05D007144 2.7e-35 153.3 206 43.2
BcaNung02020 Brassica carinata HOM05D005840 ORTHO05D007144 3.9e-34 149.4 126 63.5
CBR_g20004 Chara braunii HOM05D005840 ORTHO05D007144 1.1e-31 141.4 206 44.2
BcaB04g19822 Brassica carinata HOM05D005840 ORTHO05D007144 1.6e-27 127.5 120 58.3
Gohir.D08G116401 Gossypium hirsutum HOM05D005840 ORTHO05D007144 3.9e-26 122.9 110 61.8
SalBow4G0698 Salvia bowleyana HOM05D001856 ORTHO05D007144 7.9e-19 98.6 56 76.8
Duzib114G0266 Durio zibethinus HOM05D005840 ORTHO05D007144 5.7e-17 92.4 145 40.0
SalBow6G2140 Salvia bowleyana HOM05D005840 ORTHO05D007144 4.8e-16 89.4 50 76.0
Cre01.g012300 Chlamydomonas reinhardtii HOM05D005840 ORTHO05D007144 3.1e-15 86.7 142 40.8
MCO06G087 Micromonas commoda HOM05D005840 ORTHO05D007144 1.0e-13 81.6 209 32.1
COL.COLO4_35602 Corchorus olitorius HOM05D005840 ORTHO05D007144 1.3e-13 81.3 123 37.4
CAN.G2.4 Capsicum annuum HOM05D005840 ORTHO05D007144 5.0e-13 79.3 78 57.7
Potri.010G149800 Populus trichocarpa HOM05D005840 ORTHO05D007144 8.5e-13 78.6 79 53.2


User provided reference genes

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